RedOxiBase: View Perox 8208

Entry information : PtrAPx-R

Entry ID	8208
Creation	2011-03-17 (Christophe Dunand)
Last sequence changes	2011-05-10 (Christophe Dunand)
Sequence status	complete
Reviewer	Not yet reviewed
Last annotation changes	2011-05-10 (Christophe Dunand)

Peroxidase information: PtrAPx-R

Name

PtrAPx-R

Class

Ascorbate peroxidase related [Orthogroup: APx-R001]

Taxonomy

Eukaryota Bacillariophyta Bacillariophyceae Phaeodactylaceae Phaeodactylum

Organism

Phaeodactylum tricornutum [TaxId: 2850 ]

Cellular localisation

N/D

Tissue type

N/D

Inducer

N/D

Repressor

N/D

Best BLASTp hits

Perox	score	E-value	PtrAPx-R start..stop	S start..stop
TpsAPx-R	313	5e-107	39..327	5..297
LeAPx-R	162	1e-47	8..322	64..321
CclAPx-R	160	6e-47	40..321	96..330
CsAPx-R	160	6e-47	40..321	96..330

Gene structure Fichier

Exons►

Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size
N° 1	909336..910319	984
complement(join((909336..910319))

Literature and cross-references PtrAPx-R

DNA ref.	GenBank: CM000613.1 (910319..909336)
mRNA ref.	GenBank: XM_002181064.1
Cluster/Prediction ref.	UniGene: Ptc.1241

Protein sequence: PtrAPx-R

Sequence Properties
first value : protein
second value (mature protein)

Length (aa):	327 (311)
PWM (Da):	36028.89 (34331.9)
PI (pH):	8.66 (8.23)	Peptide Signal:	cut: 33 range:17-327

Sequence 0
Send to BLAST
Send to Peroxiscan

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

MQLLPITRAA FLGTLALAPQ LLPFQRLPNF QALDEVPSEK AAQTINGSKI LRERVREQLA RDTSLAGPLL RLAFHDATTF ESSNGFQSGG SNGSIRFELE KMENRGLIRP LHVVEAIHGE INKTYGISLA DAIALAGAVA VEQAGGPFIP IRLGRSDVSR SDPTYLRKTQ RRETERSVVA ETMPNPGLDA DGLRLYFERL GLSESEFVAL SGAHSLGRHV SLLGMSPSCL KNLTQKCLEE
APTLLPFVSS SVDRFDNSYF PALMKWNSRS VFIGEVAFIP TDVALVVDKG LYRHVVRFAD DQSLYFRTFR RAYQKLVENT ATSVLRY

Retrieve as FASTA

Remarks

Complete sequence from genomic (chromo 10, no intron) and 22 or 4 ESTs.

DNA ►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

ATGCAACTTT TGCCGATCAC GCGGGCAGCC TTCCTCGGCA CACTAGCACT CGCGCCACAG TTGCTGCCGT TTCAGCGACT CCCTAATTTC CAAGCACTCG ACGAAGTTCC CTCAGAAAAA GCCGCACAAA CTATAAATGG GTCCAAGATC CTTCGTGAAC GAGTCCGTGA GCAGCTTGCC CGAGATACCT CATTGGCAGG TCCCTTGTTG CGTTTGGCCT TTCACGACGC CACCACATTC GAAAGTTCCA ACGGCTTTCA GTCAGGAGGC TCCAACGGAT CCATCCGCTT TGAATTGGAA AAGATGGAGA ACCGGGGATT GATTCGACCT TTGCACGTCG TCGAGGCAAT TCATGGCGAA ATCAACAAAA CCTACGGTAT TTCCCTAGCC GACGCCATCG CCCTGGCAGG CGCAGTCGCT GTAGAGCAAG CTGGAGGGCC GTTTATTCCC ATACGACTCG GACGGTCGGA TGTGTCTAGA TCCGATCCAA CCTATTTGCG AAAAACGCAA CGTAGAGAGA CTGAGCGATC TGTGGTTGCT GAGACCATGC CAAATCCAGG TCTCGATGCG GACGGGCTTC GTTTGTATTT TGAGCGTCTT GGCTTGTCAG AGTCCGAGTT TGTGGCTCTA TCAGGGGCGC ATAGCTTAGG GCGTCACGTG TCTCTGCTGG GCATGTCTCC AAGTTGCTTG AAAAACTTGA CCCAGAAGTG CCTAGAAGAG GCACCCACAC TCCTGCCCTT TGTTTCTTCG TCAGTGGATC GGTTTGACAA CTCTTATTTT CCAGCACTGA TGAAATGGAA CAGTCGCAGT GTTTTTATTG GTGAGGTGGC GTTCATTCCT ACGGATGTAG CGTTGGTCGT AGACAAAGGC TTGTATCGCC ATGTAGTACG ATTTGCGGAC GACCAGTCCT TATATTTTCG GACCTTCCGA CGCGCCTACC AGAAGCTGGT GGAAAACACC
GCAACATCAG TATTGCGCTA CTGA

Retrieve as FASTA

CDS►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

Retrieve as FASTA