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Entry information : BoAPx-R-1Ca_other
Entry ID 8353
Creation 2011-04-29 (Christophe Dunand)
Last sequence changes 2011-04-29 (Christophe Dunand)
Sequence status complete
Reviewer Not yet reviewed
Last annotation changes 2012-05-10 (Christophe Dunand)
Peroxidase information: BoAPx-R-1Ca_other
Name BoAPx-R-1Ca_other
Class Ascorbate peroxidase related    [Orthogroup: APx-R001]
Taxonomy Eukaryota Viridiplantae Streptophyta Brassicaceae Brassica
Organism Brassica oleracea (Cauliflower)    [TaxId: 3712 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value BoAPx-R-1Ca_other
start..stop		 S start..stop
BnAPx-R-1_other 672 0 1..325 1..325
BrAPx-R-1Aa_other 644 0 2..325 3..327
AlyAPx-R 567 0 1..325 1..329
AtAPx-R 561 0 1..325 1..329
Literature and cross-references BoAPx-R-1Ca_other
EST ref. GenBank:   DK480316.1 [5' end]  DK539912.1 [3' end]
Protein sequence: BoAPx-R-1Ca_other
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   325
PWM (Da):   %s   35839.16  
PI (pH):   %s   8.36
Sequence
Send to BLAST
Send to Peroxiscan
*.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
MTTTTASLFS RCHSSSLNFK CELESPAKTR LFSPATGKHV VRSLKAWRVR CSSDDPGSRH VYVSSRRNMV VMLSTVQLLS HLLPPDGKAA DMYPLMKDEI RRVVTKGKAA GVLRLVFHDA  GTFEFDDNTG GINGSIVYEL ERPENGGLKR SLKVLEKAKI KVDEIQPVSW ADMIAVGGSE AVSMCGGPTI PVVLGRLDSM QPDPEDKLPP ESLNASGLKE CFQRKGFSTQ ELVALSGAHT 
IGSKGFGDPF TFDNAYYKIL LEKPWRSTTS KMTSMVGLPS DHALVEDDEC LRWVKEYAED QDKFFRDFTN AYIKLVNSGA KWKTL 

Retrieve as FASTA  
Remarks Complete sequence from 5 ESTs (DK474454.1, DK506055.1, DK534070.1). No GSS.
cDNA►
Send to BLAST
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
GGCTGATACA TTAAAAAAAT TCAAGCTGCC GCTCTCGGTG ATTCTCGTCC CACCGTTAAA GATGACGACG ACGACTGCGT CTCTGTTTTC TCGGTGCCAC TCTTCTTCTT TAAACTTCAA  ATGCGAACTC GAATCTCCCG CGAAAACACG ACTCTTCTCT CCTGCGACAG GGAAACACGT TGTCAGATCG TTAAAAGCAT GGCGTGTCCG TTGCTCCTCC GATGATCCTG GTTCGCGTCA  TGTATACGTC TCCAGTAGAA GAAACATGGT TGTAATGTTG TCCACTGTAC AGCTTCTGTC TCATTTGCTT CCGCCAGATG GAAAAGCAGC TGACATGTAT CCACTGATGA AAGATGAGAT  AAGGAGAGTG GTGACGAAGG GTAAAGCTGC TGGTGTGCTT CGTTTAGTGT TTCATGATGC TGGAACCTTT GAATTTGATG ATAACACAGG TGGCATCAAT GGGTCTATTG TTTATGAACT  TGAGAGACCT GAAAACGGAG GTTTGAAGAG ATCCCTTAAG GTTCTAGAGA AAGCAAAGAT TAAGGTTGAT GAGATACAAC CAGTGTCTTG GGCGGATATG ATCGCTGTCG GTGGCTCTGA  AGCAGTCTCA ATGTGCGGCG GCCCAACGAT TCCAGTAGTT TTAGGAAGAC TTGATTCGAT GCAACCTGAT CCAGAAGACA AGTTACCTCC AGAATCCCTC AATGCCTCGG GTTTAAAAGA  ATGTTTCCAA AGAAAAGGAT TCTCGACGCA AGAACTTGTT GCCTTGTCTG GTGCACATAC GATTGGGAGT AAAGGCTTTG GAGATCCATT TACTTTTGAC AATGCATACT ACAAAATCCT  ACTTGAAAAA CCTTGGAGAT CTACTACATC CAAAATGACG AGTATGGTTG GGCTTCCTTC GGATCATGCC CTCGTGGAGG ATGATGAGTG CTTAAGGTGG GTGAAAGAGT ATGCGGAAGA  CCAAGACAAG TTCTTCAGAG ACTTCACCAA TGCTTATATC AAACTAGTTA ACTCTGGTGC CAAATGGAAA ACATTATGAT GTCTAATTTA TCTTATGTTA GTTCATAAAC ATGCCCTGAT 
AATTTTGGGT TGTAATGCTT ATTTAATTAT TTTTCCTTTT TATATAAATG ATAAATATTT CAACG 

Retrieve as FASTA