Entry information : CvarAPx-R
Entry ID 8356
Creation 2011-05-02 (Christophe Dunand)
Last sequence changes 2011-07-27 (Catherine Mathe)
Sequence status complete
Reviewer Christophe Dunand
Last annotation changes 2015-05-27 (Christophe Dunand)
Peroxidase information: CvarAPx-R
Name CvarAPx-R
Class Ascorbate peroxidase related    [Orthogroup: APx-R001]
Taxonomy Eukaryota Viridiplantae Chlorophyta Trebouxiophyceae Chlorellaceae Chlorella
Organism Chlorella variabilis (C.sp. NC64A)    [TaxId: 554065 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value CvarAPx-R
start..stop
S start..stop
CsorAPx-R 371 2.84e-129 111..350 81..319
CreAPx-R 298 3.88e-100 127..350 111..337
VcaAPx-R 258 1.28e-84 115..350 89..324
EUgAPx-R01 253 4.48e-84 119..346 4..235
Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '8356' 'complement(join(77829..77971,78156..78264,78445..78591,78787..78913,79051..79181,79315..79710))' Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 79315..79710 394 N° 2 79051..79181 129 N° 3 78787..78913 125 N° 4 78445..78591 145
N° 5 78156..78264 107 N° 6 77829..77971 141  
complement(join(77829..77971,78156..78264,78445..78591,78787..78913,79051..79181 ,79315..79710))


exon

Literature and cross-references CvarAPx-R
Literature Blanc,G., Duncan,G., Agarkova,I., Borodovsky,M., Gurnon,J., Kuo,A. Lindquist,E., Lucas,S., Pangilinan,J., Polle,J., Salamov,A., Terry,A., Yamada,T., Dunigan,D.D., Grigoriev,I.V., Claverie,J.M. and Van Etten,J.L. The Chlorella variabilis NC64A Genome Reveals Adaptation to Photosymbiosis, Coevolution with Viruses, and Cryptic Sex Plant Cell 22 (9), 2943-2955 (2010).
DNA ref. GenBank:   GL433872.1 (79710..77829) JGI genome:   scaffold_38 (68402..70897)
Cluster/Prediction ref. JGI gene:   56419
Protein sequence: CvarAPx-R
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   350
PWM (Da):   %s   36576.43  
PI (pH):   %s   7.86
Sequence
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MISSAPCQKGAVAQLHCSTVCHTPKRHAAVRCSCTASGETRLDGASRESRKLLTVPPADAVLTGGSSTRSSGAHPRRRDLLQAAMAAPLPQLLPWPGLAAAATAGEPGPRYLTAEQQAAV
DAAFAATLPKSK
APVMVRLVFHDAGSYSAAAGDGGVNASIRFELDRPDNFGLKRGWNVIEATDKKLKGTAAEGAVSKADLIALAGAYAVRITGGPAIVAVGRQDAAAADPDGRMPELDFS
AEQQLANFAAKGLSAQEFVVLSGSHT
LGSKGYGDPVTFDNTYYKTLLQQPWVDKSNEMAQHTGIPTDHVLPDDPTCRPLIQRYAADQAAFFADFAAAYDKMASLGARWA

Retrieve as FASTA  
Remarks Complete sequence from genomic (5 introns). N-term uncertain...
DNA
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGATCTCCAGTGCGCCCTGCCAGAAGGGGGCGGTAGCCCAGCTGCATTGCAGCACAGTCTGCCACACCCCCAAGCGACACGCGGCTGTGCGATGCAGCTGTACGGCCTCAGGTGAGACG
CGATTGGATGGCGCCAGCCGAGAGAGCCGCAAGCTGCTGACAGTGCCGCCTGCCGATGCTGTGCTCACAGGAGGAAGCAGCACGCGCTCCAGTGGCGCCCACCCTCGCAGACGAGACCTG
CTGCAAGCGGCAATGGCTGCGCCGCTGCCGCAGCTGCTCCCCTGGCCGGGGTTAGCGGCGGCGGCCACGGCCGGCGAGCCTGGTCCACGGTATCTCACCGCCGAGCAGCAGGCGGCCGTG
GATGCAGCATTCGCCGCCACGCTGCCCAAATCCAAG
GTGTGAAGGCTTTCCTTGTTGCATGGCCTTTGAGTCCCCTTCTGGCTGAAGGAATGAGAATGGCCACAACCCGCAGAGCACCGC
CTCACTCTGGTGGTGGTTCTGCTTCCATGCCCTTGCCTACCGCCTACAGGCGCCCCCGTCATGGTGCGCCTGGTGTTCCACGACGCCGGCTCCTACAGCGCCGCTGCCGGCGATGGCGGC
GTCAACGCCTCGATCCGGTTCGAGCTCGACCGCCCCGACAACTTTGGCCTGAAGCGCGGCTG
GTGCGCCATGTTCTGTTCATGCAAGTCGCCCACACCAACGGCCCATGCCACAAGCTGC
TGGCTGAGCCACCGCCTGCGCGTCATGCTCGCCCGCCAATCGATCGCTGTGGTGGTTTCACATGGCTCCGCGAGTGCAGGAGAACGTGATCGAGGCGACCGACAAGAAGCTCAAGGGCAC
GGCGGCAGAGGGGGCAGTGTCCAAGGCAGACCTCATCGCGCTGGCAGGGGCGTACGCCGTGCGCATCACCGGCGGCCCTGCAATACAG
GTGTGGCGGTGGCGGGCTTGTGGGTCAGCAAG
GCCACCGCGGTGCTTCACGCATGTGGGCTGTCTGCACACGCCCGTCAACCCGAGGCCAGGCACGGGGCACCAAGCATGCGGGAAGCAGGCATGGACAGGCAGCGGCATGTCATGCCTGCT
CGCGGCACCCCTCGCTCCCTACGTGCTCCTGCTGCGGCCGCAGGTGTGGCTGTGGGGCGGCAGGATGCTGCGGCCGCAGACCCCGACGGGCGCATGCCTGAGCTGGACTTCAGCGCCGAG
CAGCAGCTGGCCAACTTTGCGGCCAAGGGGCTCAGCGCCCAGGAATTTGTGGTGCTGTCGGGGTCGCACACG
GTGAGCAGAGGGGGGTGGCTGGGCTGGAGCGCGCCACAGACTGTTTGG
ATGAGCTTGGATGGGCTGGCTCACATGCCGTCAGTCTGGTCTCCCTTTCTGCTCCGGTTTCCGTACCACTCGCTCCATGTGTGGTGCTAGTCCCCCTGCCTGCCTGACTCCCTGTCCTCT
GCTTGTGTGCAGCTCTGGGCAGCAAGGGGTATGGCGACCCGGTGACCTTTGACAACACCTACTACAAGACGCTGCTGCAACAGCCGTGGGTGGACAAGAGCAACGAGATGGCGCAGCACA
CGG
GTGCGCTGCCGGCCGCGTCGCAGCTGCCGGCCGGCGATGGCCACTGCGCTTTTGGGAAGCAGTGCAGCTGGCTTGCATTCTCTCGTCGCTCGGCTTCTCGGATTGCCAACCCGCACC
ACCACACCGCACGGCCCTGCACACACATTGTGTCCACTGAGTGAGCCTGACCCGCCCACTGCCGCAGGGGGATCCCAACCGACCACGTCCTGCCCGACGACCCCACCTGTCGCCCCCTCA
TCCAGCGCTACGCCGCCGACCAGGCCGCCTTCTTTGCCGACTTTGCGGCGGCATACGACAAGATGGCCAGCCTGGGGGCGCGCTGGGCCTGA

Retrieve as FASTA  
CDS
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGATCTCCAGTGCGCCCTGCCAGAAGGGGGCGGTAGCCCAGCTGCATTGCAGCACAGTCTGCCACACCCCCAAGCGACACGCGGCTGTGCGATGCAGCTGTACGGCCTCAGGTGAGACG
CGATTGGATGGCGCCAGCCGAGAGAGCCGCAAGCTGCTGACAGTGCCGCCTGCCGATGCTGTGCTCACAGGAGGAAGCAGCACGCGCTCCAGTGGCGCCCACCCTCGCAGACGAGACCTG
CTGCAAGCGGCAATGGCTGCGCCGCTGCCGCAGCTGCTCCCCTGGCCGGGGTTAGCGGCGGCGGCCACGGCCGGCGAGCCTGGTCCACGGTATCTCACCGCCGAGCAGCAGGCGGCCGTG
GATGCAGCATTCGCCGCCACGCTGCCCAAATCCAAG
GCCCCCGTCATGGTGCGCCTGGTGTTCCACGACGCCGGCTCCTACAGCGCCGCTGCCGGCGATGGCGGCGTCAACGCCTCGATC
CGGTTCGAGCTCGACCGCCCCGACAACTTTGGCCTGAAGCGCGGCTG
GAACGTGATCGAGGCGACCGACAAGAAGCTCAAGGGCACGGCGGCAGAGGGGGCAGTGTCCAAGGCAGACCTC
ATCGCGCTGGCAGGGGCGTACGCCGTGCGCATCACCGGCGGCCCTGCAATACAG
GTGGCTGTGGGGCGGCAGGATGCTGCGGCCGCAGACCCCGACGGGCGCATGCCTGAGCTGGACTTC
AGCGCCGAGCAGCAGCTGGCCAACTTTGCGGCCAAGGGGCTCAGCGCCCAGGAATTTGTGGTGCTGTCGGGGTCGCACACG
CTGGGCAGCAAGGGGTATGGCGACCCGGTGACCTTTGAC
AACACCTACTACAAGACGCTGCTGCAACAGCCGTGGGTGGACAAGAGCAACGAGATGGCGCAGCACACGG
GGATCCCAACCGACCACGTCCTGCCCGACGACCCCACCTGTCGCCCCCTC
ATCCAGCGCTACGCCGCCGACCAGGCCGCCTTCTTTGCCGACTTTGCGGCGGCATACGACAAGATGGCCAGCCTGGGGGCGCGCTGGGCCTGA

Retrieve as FASTA