Entry information : SbPrx99 (Sobic.006G277600.1 [2.1] / Sb06g033850 [1.4])
Entry ID 836
Creation 2005-12-19 (Christophe Dunand)
Last sequence changes 2005-12-19 (Christophe Dunand)
Sequence status complete
Reviewer Messaoudi
Last annotation changes 2014-08-04 (Messaoudi)
Peroxidase information: SbPrx99 (Sobic.006G277600.1 [2.1] / Sb06g033850 [1.4])
Name (synonym) SbPrx99 (Sobic.006G277600.1 [2.1] / Sb06g033850 [1.4])
Class Class III peroxidase    [Orthogroup: Prx205]
Taxonomy Eukaryota Viridiplantae Streptophyta Monocotyledons Poaceae Sorghum
Organism Sorghum bicolor    [TaxId: 4558 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value SbPrx99
start..stop
S start..stop
ZmPrx85 612 0 2..337 1..331
SiPrx89 520 0 40..336 35..331
SpPrx25 488 1e-175 2..336 1..300
OsPrx59 353 1e-121 8..338 8..334
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 61787768..61788811 1044  
complement(join(61787768..61788811))


exon

Literature and cross-references SbPrx99 (Sobic.006G277600.1 [2.1] / Sb06g033850 [1.4])
Literature Cordonnier-Pratt,M.-M. et al., unpublished
DNA ref. Phytozome 12:   chromosome_6 (61788811..61787768)
Cluster/Prediction ref. PlantGDB:   SbGSStuc11-12-04.31687.1
Protein sequence: SbPrx99 (Sobic.006G277600.1 [2.1] / Sb06g033850 [1.4])
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   347 (321)
PWM (Da):   %s   36165.26 (33706.9) Transmb domain:   %s   i7-24o
PI (pH):   %s   4.82 (4.72) Peptide Signal:   %s   cut: 27 range:27-347
Sequence
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Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MMSGSRVLFV VAAAVGVLLA AAAVSSRPVV VPLATGRPGA GGNDELSVYF HVESCPQLET IVRSAVDAAL QQNVRLTAGL LRVFFHDCFP QGCDASILLD NGERGLPPNV GLQQEAVQLV  EDIRAKVHAA CGPTVSCADI TVLATRDAVS LSGGPSFTVP LGRLDSVAPA SSNDVFTLPP PTSTVDALLS AFASKNLSDP ADLVALSGAH TVGKARCSSF GDVAGPATDD ITRCVTATCS 
AAGAGDTLRD LDFLTPAVFD NLYFIELTLK KNKGVMLPSD QGLATDPRTS WLVQGFADNH WWFFDQFGTS MVKMSQLKGP QGNVGEIRRN CLRPNTNSDV DIAAATA 

Retrieve as FASTA  
Remarks Complete sequence from 49 ESTs and genonic (chromo 6, no intron). Strongly expressed.
DNA
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.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGATGAGCG GCAGCCGTGT ATTATTCGTC GTGGCCGCCG CCGTGGGCGT GCTGCTCGCC GCCGCTGCCG TCTCCTCGAG GCCCGTCGTC GTGCCTCTGG CTACTGGCCG CCCTGGTGCC  GGCGGTAACG ACGAGCTGTC GGTGTACTTC CACGTGGAGT CGTGCCCGCA GCTGGAGACG ATCGTGCGGT CCGCCGTGGA CGCGGCGCTC CAGCAGAACG TGCGGCTGAC GGCGGGGCTC  CTCCGTGTGT TCTTCCACGA CTGCTTCCCG CAGGGTTGCG ACGCGTCGAT CCTGCTGGAC AACGGCGAGC GCGGCCTCCC GCCCAACGTC GGTCTGCAGC AGGAGGCCGT GCAGCTGGTG  GAGGACATCC GCGCCAAGGT GCACGCGGCG TGCGGGCCCA CGGTGTCGTG CGCCGACATC ACCGTGCTGG CCACCCGCGA CGCCGTGAGC CTGTCCGGCG GGCCCTCCTT CACGGTGCCG  CTGGGGCGGC TCGACAGCGT GGCGCCGGCG TCCAGCAACG ACGTGTTCAC GCTGCCGCCG CCGACGTCGA CCGTGGACGC GCTGCTGTCG GCGTTCGCCA GCAAGAACCT GTCGGACCCG  GCGGACCTGG TGGCGCTGTC GGGCGCGCAC ACGGTGGGGA AGGCGCGGTG CAGCTCGTTC GGCGACGTGG CGGGGCCGGC CACCGACGAC ATCACCCGGT GCGTGACGGC CACGTGCTCC  GCGGCCGGCG CCGGCGACAC GCTGCGGGAT CTGGACTTCC TGACGCCGGC GGTGTTCGAC AACCTCTACT TCATCGAGCT GACGCTGAAG AAGAACAAGG GGGTGATGCT GCCGTCGGAC  CAGGGCCTGG CCACGGACCC GCGCACCAGC TGGCTCGTCC AGGGCTTCGC CGACAACCAC TGGTGGTTCT TCGACCAGTT CGGGACCTCC ATGGTCAAGA TGAGCCAGCT CAAGGGACCG 
CAGGGGAACG TCGGCGAGAT CCGCCGGAAC TGCTTACGCC CAAACACCAA CAGCGATGTC GATATCGCCG CCGCCACTGC TTGA 

Retrieve as FASTA  
CDS
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGATGAGCG GCAGCCGTGT ATTATTCGTC GTGGCCGCCG CCGTGGGCGT GCTGCTCGCC GCCGCTGCCG TCTCCTCGAG GCCCGTCGTC GTGCCTCTGG CTACTGGCCG CCCTGGTGCC  GGCGGTAACG ACGAGCTGTC GGTGTACTTC CACGTGGAGT CGTGCCCGCA GCTGGAGACG ATCGTGCGGT CCGCCGTGGA CGCGGCGCTC CAGCAGAACG TGCGGCTGAC GGCGGGGCTC  CTCCGTGTGT TCTTCCACGA CTGCTTCCCG CAGGGTTGCG ACGCGTCGAT CCTGCTGGAC AACGGCGAGC GCGGCCTCCC GCCCAACGTC GGTCTGCAGC AGGAGGCCGT GCAGCTGGTG  GAGGACATCC GCGCCAAGGT GCACGCGGCG TGCGGGCCCA CGGTGTCGTG CGCCGACATC ACCGTGCTGG CCACCCGCGA CGCCGTGAGC CTGTCCGGCG GGCCCTCCTT CACGGTGCCG  CTGGGGCGGC TCGACAGCGT GGCGCCGGCG TCCAGCAACG ACGTGTTCAC GCTGCCGCCG CCGACGTCGA CCGTGGACGC GCTGCTGTCG GCGTTCGCCA GCAAGAACCT GTCGGACCCG  GCGGACCTGG TGGCGCTGTC GGGCGCGCAC ACGGTGGGGA AGGCGCGGTG CAGCTCGTTC GGCGACGTGG CGGGGCCGGC CACCGACGAC ATCACCCGGT GCGTGACGGC CACGTGCTCC  GCGGCCGGCG CCGGCGACAC GCTGCGGGAT CTGGACTTCC TGACGCCGGC GGTGTTCGAC AACCTCTACT TCATCGAGCT GACGCTGAAG AAGAACAAGG GGGTGATGCT GCCGTCGGAC  CAGGGCCTGG CCACGGACCC GCGCACCAGC TGGCTCGTCC AGGGCTTCGC CGACAACCAC TGGTGGTTCT TCGACCAGTT CGGGACCTCC ATGGTCAAGA TGAGCCAGCT CAAGGGACCG 
CAGGGGAACG TCGGCGAGAT CCGCCGGAAC TGCTTACGCC CAAACACCAA CAGCGATGTC GATATCGCCG CCGCCACTGC TTGA 

Retrieve as FASTA