Entry information : RcAPx-R
Entry ID 8365
Creation 2011-05-09 (Christophe Dunand)
Last sequence changes 2011-05-09 (Christophe Dunand)
Sequence status complete
Reviewer Qiang Li
Last annotation changes 2012-01-04 (Qiang LI)
Peroxidase information: RcAPx-R
Name RcAPx-R
Class Ascorbate peroxidase related    [Orthogroup: APx-R001]
Taxonomy Eukaryota Viridiplantae Streptophyta Euphorbiaceae Ricinus
Organism Ricinus communis    [TaxId: 3988 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value RcAPx-R
start..stop
S start..stop
MeAPx-R 499 9.47e-180 18..328 24..335
PtAPx-R 494 1.34e-177 19..328 27..337
VvAPx-R 454 3.58e-162 3..328 10..330
CclAPx-R 446 6.89e-159 11..328 19..335
Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '8365' 'join(1023147..1023303,1023494..1023608,1023928..1024055,1024624..1024694,1024894..1024936,1025029..1025125,1025250..1025333,1025501..1025622,1025931..1025997,1026291..1026393)' Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 1023147..1023303 155 N° 2 1023494..1023608 113 N° 3 1023928..1024055 126 N° 4 1024624..1024694 69
N° 5 1024894..1024936 41 N° 6 1025029..1025125 95 N° 7 1025250..1025333 82 N° 8 1025501..1025622 120
N° 9 1025931..1025997 65 N° 10 1026291..1026393 101  
join(1023147..1023303,1023494..1023608,1023928..1024055,1024624..1024694,1024894 ..1024936,1025029..1025125,1025250..1025333,1025501..1025622,1025931..1025997,10 26291..1026393)


exon

Literature and cross-references RcAPx-R
DNA ref. Phytozome 12:   29848 (1023147..1026393)
EST ref. Galderia Genome:   EG662028.1 [5' end]
Protein sequence: RcAPx-R
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   328 (294)
PWM (Da):   %s   35873.27 (31934.0)  
PI (pH):   %s   8.76 (8.74) Peptide Signal:   %s   cut: 25 range:25-318
Sequence
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MHLLCFSAGPAPRWIMTLEFKFPSKSQHPYFSTIKSRAKPLQACS
LSRNEDS
GKDLDWVYTKRRIFISISTLPFLFHLHECFEGFGAKAAESDTTIYNLMKGEVRKVVSKGKAAGVLRLVFHDAGTFEMNGTGGMNGSIVFELDRPENAGLKKSLVVEKAKKEVDAIQPVSW
ADMIAVAGAEAVSVCGGPTIPVLLGRLDS
GEPDAEGKLPEESLGASSLKQCFQRKGLSTQELVALSGAHTLGSKGFGNPTVFDNSYYKILLEKPWMSAGMSSMIGLPSDRALVEDDECLR
WIKKYADDQNTFFKDFKSAYIKLVNSGARWKSM

Retrieve as FASTA  
Remarks Complete sequence frpm genomic (9 introns) and 1 EST. No prediction from phytozome.
DNA
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGCATCTCTTGTGTTTTAGTGCCGGTCCGGCCCCGAGATGGATCATGACACTTGAATTCAAGTTTCCCTCTAAATCACAGCATCCCTATTTCTCGACGATCAAATCTCGAGCAAAACCT
CTCCAAGCTTGCAGCCTTTCAAGAAATGAGGACTCTG
TGGTAATCATCTTAGTGTTTAATTACTTAGTAAGCCAAGCAAATGAGAAAGAAAGATTCTCTTTTTGGCTAATTTGGTCTTTT
TGGTCCGTTTTTATTACTGTATGTTTAATTACTCAAAGAACTAAGCAGATGATAAGACAAGAATCTCTTTGGGACTTGATTTTTTCCTCTCTTTTTTTGGGGTCTGCAGGAAAAGATCTT
GACTGGGTTTATACTAAAAGGAGAATCTTTATCAGTATATCTACACTACCGTTTCTATTTCATTTGCATGAATGCTTTGAAGGTTTTGGTGCCAAGGCAGCTGA
GAGTAAGTTAGCAAAA
TAGTTACTATGACTTTGAGTTGCTTTTTCTTTTATGTGTAAATTTTTATTTCAAGTTATAGTACTTGGCTTTAGTAGAGTTCAATATCTAGAAGTAGATTCCTCTTTAAATAATTCTATT
GCTTTCAAGGTTTATGTCTAGTGGAACTTCATCTTCAAAGACGTTCCTCAAGTTTTGACATGTAGCTTATATGCTTGTGGGCCTGATGTAGTGTATTTTTGTGCGTCCTTGTTCTTGTGG
TGCCTCTTAGTTGCTATACTTGTTAATTTACTCCCATAATTTTCTTTCCTTTCCTGATCTTAAAGGTCAGATACTACTATATATAATCTCATGAAGGGAGAAGTAAGGAAGGTAGTGTCC
AAAGGCAAGGCTGCTGGTGTACTTCGTCTTGTTTTTCATGATGCAGGAACCTTTGAAATGAATGGGACTTCAG
AGGTATTAATTTTGGAAATATGAAATTTTAGTGATCATAGTGTACAT
AATCTTTATCAGTTGTATTAAGGATTCACATCTTATGGTTCCATTAAATGTTTGCATTAACCTGTGTGATAAAGTGAAAGAAGTCAGCTTTAGGTTATGACCAAATTCTTATATAAGCTT
TTATTGTCTCGGGTATCCATAAGGATGTAGTTGAGAGAGATTCATGATAGTACTCATATTCATAAAGCATCTTCAGTCATGGCTATGGCTCTTTTACATAAACCACCTAACTACATAATG
TGGGAGAAGCAAGTCGAGCTTGAGATGGTTGAATTAATTGGCATTTGGTGCCATAAAAATGAGATCTCAACTTTAGTATAGGATTAGTGAATCTCTGTGCCAGATAATTTAAATATTTAG
TTAATTTTGCTCAGTTCAAGTTCATAGTGTATATCAACGTTGTGCACTGGAATCTGGTCTTTTTTTATTTCTTCTCATTTCCTCATTTCTTTACGTCCCCTCTTGGAAGTAATTTTGTTC
TCTTAGGCTTTTAACTTACTCTGCACTGTTGTTATTGTTGTAGGGGGGATGAATGGTTCTATAGTTTTTGAACTTGATAGGCCTGAAAATGCAGGTTTAAAGAAATCTTTGAAGAGGTAT
ACCTCTGACTCTCTCTCAGGCTTCTATTCTTATAAACATAAACATGTAACCTGCTCTGATGTATATGCATGTGTTGCGACCATGTGCTCTCCTTCTTATTGTTCTACTTATGTGATTTTG
TTCTCTAATTCAGACTGGTCAAATCTTATACAATCTCCCACCTGCTAACTCCAAAGTCGGTGCATTGTTGTTTAGGTTGTTGAGAAAGCAAAGAAGGAAGTGGATGCAATACAACCAGAG
GTGGTTAAAATATGGTGCAATGTTAAAGGTTTCAGCATTTGTTAGAGAGTGTGGGGCCTTCTTGATATCCTATTGGAGTTTTCCTTTTTTAGTATCCTGGGCGGACATGATTGCTGTGGC
TGGAGCTGAAGCTGTTTCGGTTTGTGGAGGTCCAACAATCCCAGTTTTACTGGGGAGGCTGGATTCAGG
GGGTATGTAAGAGATATTTAACTGTTGCCCTTACTATTTTAACATGGAATA
AAACTTAAAATCAGACAATTTAGAATACCTGCATAAATTTCTTGGCACCAATTACTAACAAGTAACTATTTACAGGGAGCCTGATGCGGAAGGAAAACTTCCTGAGGAGTCTCTGGGTGC
TTCTAGTTTGAAGCAATGCTTTCAAAGAAAAGGCTTATC
TCGTGAGTCTTCATCCATTCTTATTGAAATTTTATTCTAGAAGCTGATGACATATTTTCTGTATCCGTTGTTTACATAATT
TTTTTTTTCATTAGTAAGTTTTTGAATTGTAACCATAATTAAATATCAGATGATATTTTTTCTGAAGAAAACTAATTTACCTTTGCAGAACACAAGAACTGGTTGCATTATCTGGAGCTC
ATACTCTGGGGAGTAAAGGCTTTGGAAACCCAACTGTTTTCGACAATTCTTACTATAAAATTCTTCTGGAAAAGCCATGGATGTCTTCAG
AGGTAAAGCTAACTTATTATCATCTTTTTG
CCACTAGTTCTGTCTGCATTAGATAGTTGCCTTAAGATCTCAGATAGTTCAGTAGTATGTCAGCTGAGGGCACTGGTGTCCTTTAGTTACAGGCCTGAATCTATTCCAATATGAATTTTT
TATATACATCAGGATTAATGATGCATATAGATAATCTAGAATGCGGGTAAAGCAAGCATCTTTAGTCAGAATGGAATGTGCTACATTTTGGTTCCTCTTTCTGAAAAATCTTAACATATA
TAGATGATTCCGTTTAACTGGATTCATTTTTCAATAGCAGCTGGAATGTCAAGCATGATTGGACTTCCTTCAGATCGTGCACTTGTCGAGGATGATGAATGCTTAAGAGGTTATTCATAT
ACCAGAACCCCCCAATCAATCATTTTGCTAAGCACTCAGATATATTTTACACAGGTGTTATACAAAAAAAGTTCCATACTTCAACAACAATACAATAACCTGTATGCCCACGAAAACAAA
TCATAACTTGTAAACCAATTTCTTGCATCTTCCTCTCAATTCAGCATATGTAAGTTAGAACCTTCATGCATGTTTCCTGTAACTGAAAAGAAACTCATGAGTTCATGGAAAAAGCTTATT
TTCCAGTTTCTCAGCTGAAAGAGAACTCGTATTTTGATGCAGATGGATCAAAAAGTATGCTGATGATCAGAATACATTCTTTAAAGATTTCAAGAGTGCATACATCAAACTTGTGAATTC
AGGTGCAAGATGGAAAAGCATGTGA

Retrieve as FASTA  
CDS
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGCATCTCTTGTGTTTTAGTGCCGGTCCGGCCCCGAGATGGATCATGACACTTGAATTCAAGTTTCCCTCTAAATCACAGCATCCCTATTTCTCGACGATCAAATCTCGAGCAAAACCT
CTCCAAGCTTGCAGCCTTTCAAGAAATGAGGACTCTG
GAAAAGATCTTGACTGGGTTTATACTAAAAGGAGAATCTTTATCAGTATATCTACACTACCGTTTCTATTTCATTTGCATGAA
TGCTTTGAAGGTTTTGGTGCCAAGGCAGCTGA
GTCAGATACTACTATATATAATCTCATGAAGGGAGAAGTAAGGAAGGTAGTGTCCAAAGGCAAGGCTGCTGGTGTACTTCGTCTTGTT
TTTCATGATGCAGGAACCTTTGAAATGAATGGGACTTCAG
GGGGGATGAATGGTTCTATAGTTTTTGAACTTGATAGGCCTGAAAATGCAGGTTTAAAGAAATCTTTGAAGGTTGTTGAG
AAAGCAAAGAAGGAAGTGGATGCAATACAACCAG
TATCCTGGGCGGACATGATTGCTGTGGCTGGAGCTGAAGCTGTTTCGGTTTGTGGAGGTCCAACAATCCCAGTTTTACTGGGGAGG
CTGGATTCAGG
GGAGCCTGATGCGGAAGGAAAACTTCCTGAGGAGTCTCTGGGTGCTTCTAGTTTGAAGCAATGCTTTCAAAGAAAAGGCTTATCAACACAAGAACTGGTTGCATTATCT
GGAGCTCATACTCTGGGGAGTAAAGGCTTTGGAAACCCAACTGTTTTCGACAATTCTTACTATAAAATTCTTCTGGAAAAGCCATGGATGTCTTCAG
CTGGAATGTCAAGCATGATTGGA
CTTCCTTCAGATCGTGCACTTGTCGAGGATGATGAATGCTTAAG
ATGGATCAAAAAGTATGCTGATGATCAGAATACATTCTTTAAAGATTTCAAGAGTGCATACATCAAACTTGTGAAT
TCAGGTGCAAGATGGAAAAGCATGTGA

Retrieve as FASTA