RedOxiBase: View Perox 8365

Entry information : RcAPx-R

Entry ID	8365
Creation	2011-05-09 (Christophe Dunand)
Last sequence changes	2011-05-09 (Christophe Dunand)
Sequence status	complete
Reviewer	Qiang Li
Last annotation changes	2012-01-04 (Qiang LI)

Peroxidase information: RcAPx-R

Name

RcAPx-R

Class

Ascorbate peroxidase related [Orthogroup: APx-R001]

Taxonomy

Eukaryota Viridiplantae Streptophyta Euphorbiaceae Ricinus

Organism

Ricinus communis [TaxId: 3988 ]

Cellular localisation

N/D

Tissue type

N/D

Inducer

N/D

Repressor

N/D

Best BLASTp hits

Perox	score	E-value	RcAPx-R start..stop	S start..stop
MeAPx-R	499	9e-180	18..328	24..335
PtAPx-R	494	1e-177	19..328	27..337
VvAPx-R	454	4e-162	3..328	10..330
CclAPx-R	446	7e-159	11..328	19..335

Gene structure Fichier

Exons►

Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size
N° 1	1023147..1023303	157	N° 2	1023494..1023608	115	N° 3	1023928..1024055	128	N° 4	1024624..1024694	71
N° 5	1024894..1024936	43	N° 6	1025029..1025125	97	N° 7	1025250..1025333	84	N° 8	1025501..1025622	122
N° 9	1025931..1025997	67	N° 10	1026291..1026393	103
join(1023147..1023303,1023494..1023608,1023928..1024055,1024624..1024694,1024894 ..1024936,1025029..1025125,1025250..1025333,1025501..1025622,1025931..1025997,10 26291..1026393)

Literature and cross-references RcAPx-R

DNA ref.	Phytozome 12: 29848 (1023147..1026393)
EST ref.	Galderia Genome: EG662028.1 [5' end]

Protein sequence: RcAPx-R

Sequence Properties
first value : protein
second value (mature protein)

Length (aa):	328
PWM (Da):	35873.27
PI (pH):	8.76

Sequence 565
Send to BLAST
Send to Peroxiscan

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

MHLLCFSAGPAPRWIMTLEFKFPSKSQHPYFSTIKSRAKPLQACSLSRNEDSGKDLDWVYTKRRIFISISTLPFLFHLHECFEGFGAKAAESDTTIYNLMKGEVRKVVSKGKAAGVLRLVFHDAGTFEMNGTGGMNGSIVFELDRPENAGLKKSLVVEKAKKEVDAIQPVSWADMIAVAGAEAVSVCGGPTIPVLLGRLDSGEPDAEGKLPEESLGASSLKQCFQRKGLSTQELVALSGAHTLGSKGFGNPTVFDNSYYKILLEKPWMSAGMSSMIGLPSDRALVEDDECLRWIKKYADDQNTFFKDFKSAYIKLVNSGARWKSM

Retrieve as FASTA

Remarks

Complete sequence frpm genomic (9 introns) and 1 EST. No prediction from phytozome.

DNA ►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

ATGCATCTCTTGTGTTTTAGTGCCGGTCCGGCCCCGAGATGGATCATGACACTTGAATTCAAGTTTCCCTCTAAATCACAGCATCCCTATTTCTCGACGATCAAATCTCGAGCAAAACCT
CTCCAAGCTTGCAGCCTTTCAAGAAATGAGGACTCTGGTAATCATCTTAGTGTTTAATTACTTAGTAAGCCAAGCAAATGAGAAAGAAAGATTCTCTTTTTGGCTAATTTGGTCTTTTTG
GTCCGTTTTTATTACTGTATGTTTAATTACTCAAAGAACTAAGCAGATGATAAGACAAGAATCTCTTTGGGACTTGATTTTTTCCTCTCTTTTTTTGGGGTCTGCAGGAAAAGATCTTGA
CTGGGTTTATACTAAAAGGAGAATCTTTATCAGTATATCTACACTACCGTTTCTATTTCATTTGCATGAATGCTTTGAAGGTTTTGGTGCCAAGGCAGCTGAGTAAGTTAGCAAAATAGT
TACTATGACTTTGAGTTGCTTTTTCTTTTATGTGTAAATTTTTATTTCAAGTTATAGTACTTGGCTTTAGTAGAGTTCAATATCTAGAAGTAGATTCCTCTTTAAATAATTCTATTGCTT
TCAAGGTTTATGTCTAGTGGAACTTCATCTTCAAAGACGTTCCTCAAGTTTTGACATGTAGCTTATATGCTTGTGGGCCTGATGTAGTGTATTTTTGTGCGTCCTTGTTCTTGTGGTGCC
TCTTAGTTGCTATACTTGTTAATTTACTCCCATAATTTTCTTTCCTTTCCTGATCTTAAAGGTCAGATACTACTATATATAATCTCATGAAGGGAGAAGTAAGGAAGGTAGTGTCCAAAG
GCAAGGCTGCTGGTGTACTTCGTCTTGTTTTTCATGATGCAGGAACCTTTGAAATGAATGGGACTTCAGGTATTAATTTTGGAAATATGAAATTTTAGTGATCATAGTGTACATAATCTT
TATCAGTTGTATTAAGGATTCACATCTTATGGTTCCATTAAATGTTTGCATTAACCTGTGTGATAAAGTGAAAGAAGTCAGCTTTAGGTTATGACCAAATTCTTATATAAGCTTTTATTG
TCTCGGGTATCCATAAGGATGTAGTTGAGAGAGATTCATGATAGTACTCATATTCATAAAGCATCTTCAGTCATGGCTATGGCTCTTTTACATAAACCACCTAACTACATAATGTGGGAG
AAGCAAGTCGAGCTTGAGATGGTTGAATTAATTGGCATTTGGTGCCATAAAAATGAGATCTCAACTTTAGTATAGGATTAGTGAATCTCTGTGCCAGATAATTTAAATATTTAGTTAATT
TTGCTCAGTTCAAGTTCATAGTGTATATCAACGTTGTGCACTGGAATCTGGTCTTTTTTTATTTCTTCTCATTTCCTCATTTCTTTACGTCCCCTCTTGGAAGTAATTTTGTTCTCTTAG
GCTTTTAACTTACTCTGCACTGTTGTTATTGTTGTAGGGGGGATGAATGGTTCTATAGTTTTTGAACTTGATAGGCCTGAAAATGCAGGTTTAAAGAAATCTTTGAAGGTATACCTCTGA
CTCTCTCTCAGGCTTCTATTCTTATAAACATAAACATGTAACCTGCTCTGATGTATATGCATGTGTTGCGACCATGTGCTCTCCTTCTTATTGTTCTACTTATGTGATTTTGTTCTCTAA
TTCAGACTGGTCAAATCTTATACAATCTCCCACCTGCTAACTCCAAAGTCGGTGCATTGTTGTTTAGGTTGTTGAGAAAGCAAAGAAGGAAGTGGATGCAATACAACCAGGTGGTTAAAA
TATGGTGCAATGTTAAAGGTTTCAGCATTTGTTAGAGAGTGTGGGGCCTTCTTGATATCCTATTGGAGTTTTCCTTTTTTAGTATCCTGGGCGGACATGATTGCTGTGGCTGGAGCTGAA
GCTGTTTCGGTTTGTGGAGGTCCAACAATCCCAGTTTTACTGGGGAGGCTGGATTCAGGGTATGTAAGAGATATTTAACTGTTGCCCTTACTATTTTAACATGGAATAAAACTTAAAATC
AGACAATTTAGAATACCTGCATAAATTTCTTGGCACCAATTACTAACAAGTAACTATTTACAGGGAGCCTGATGCGGAAGGAAAACTTCCTGAGGAGTCTCTGGGTGCTTCTAGTTTGAA
GCAATGCTTTCAAAGAAAAGGCTTATCGTGAGTCTTCATCCATTCTTATTGAAATTTTATTCTAGAAGCTGATGACATATTTTCTGTATCCGTTGTTTACATAATTTTTTTTTTCATTAG
TAAGTTTTTGAATTGTAACCATAATTAAATATCAGATGATATTTTTTCTGAAGAAAACTAATTTACCTTTGCAGAACACAAGAACTGGTTGCATTATCTGGAGCTCATACTCTGGGGAGT
AAAGGCTTTGGAAACCCAACTGTTTTCGACAATTCTTACTATAAAATTCTTCTGGAAAAGCCATGGATGTCTTCAGGTAAAGCTAACTTATTATCATCTTTTTGCCACTAGTTCTGTCTG
CATTAGATAGTTGCCTTAAGATCTCAGATAGTTCAGTAGTATGTCAGCTGAGGGCACTGGTGTCCTTTAGTTACAGGCCTGAATCTATTCCAATATGAATTTTTTATATACATCAGGATT
AATGATGCATATAGATAATCTAGAATGCGGGTAAAGCAAGCATCTTTAGTCAGAATGGAATGTGCTACATTTTGGTTCCTCTTTCTGAAAAATCTTAACATATATAGATGATTCCGTTTA
ACTGGATTCATTTTTCAATAGCAGCTGGAATGTCAAGCATGATTGGACTTCCTTCAGATCGTGCACTTGTCGAGGATGATGAATGCTTAAGGTTATTCATATACCAGAACCCCCCAATCA
ATCATTTTGCTAAGCACTCAGATATATTTTACACAGGTGTTATACAAAAAAAGTTCCATACTTCAACAACAATACAATAACCTGTATGCCCACGAAAACAAATCATAACTTGTAAACCAA
TTTCTTGCATCTTCCTCTCAATTCAGCATATGTAAGTTAGAACCTTCATGCATGTTTCCTGTAACTGAAAAGAAACTCATGAGTTCATGGAAAAAGCTTATTTTCCAGTTTCTCAGCTGA
AAGAGAACTCGTATTTTGATGCAGATGGATCAAAAAGTATGCTGATGATCAGAATACATTCTTTAAAGATTTCAAGAGTGCATACATCAAACTTGTGAATTCAGGTGCAAGATGGAAAAG
CATGTGA

Retrieve as FASTA

CDS►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

Retrieve as FASTA