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Entry information : VcaCP01
Entry ID 8373
Creation 2011-05-12 (Christophe Dunand)
Last sequence changes 2011-05-12 (Christophe Dunand)
Sequence status complete
Reviewer Marcel Zamocky
Last annotation changes 2012-01-18 (Christophe Dunand)
Peroxidase information: VcaCP01
Name VcaCP01
Class Catalase peroxidase    [Orthogroup: CP002]
Taxonomy Eukaryota Viridiplantae Chlorophyta Chlorophyceae Volvocaceae Volvox
Organism Volvox carteri    [TaxId: 3067 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value VcaCP01
start..stop		 S start..stop
CreCP01 801 0 25..708 21..729
PulCP01 743 0 25..701 25..686
PsojCP 741 0 7..701 5..683
PiCP01 736 0 7..700 8..685
Gene structure Fichier Exons►
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 623660..623805 144 N° 2 624287..624496 208 N° 3 624684..624954 269 N° 4 625278..625391 112
N° 5 625814..625877 62 N° 6 626112..626281 168 N° 7 626556..627109 552 N° 8 627463..627654 190
N° 9 627905..628064 158 N° 10 628383..628523 139 N° 11 628759..628869 109  
join(623660..623805,624287..624496,624684..624954,625278..625391,625814..625877, 626112..626281,626556..627109,627463..627654,627905..628064,628383..628523,62875 9..628869)


exon

Literature and cross-references VcaCP01
Literature Prochnik S., Umen J., Nedelcu A.M., Hallmann A., Miller S.M., Nishii I., Ferris P., Kuo Al. Mitros T. et al. (2010) Genomic Analysis of Organismal Complexity in the Multicellular Green Alga Volvox carteri. Science 329:223-226.
Protein ref. UniProtKB:   D8UCP0 [Incorrect prediction]
DNA ref. Phytozome 12:   scaffold_60 (623660..628869)
Cluster/Prediction ref. UniGene:   Vca.1617 [5' end]  Vca.1438 [3' end]
Protein sequence: VcaCP01
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   710 (691)
PWM (Da):   %s   77173.99 (75116.9) Transmb domain:   %s   o15-37i
PI (pH):   %s   5.33 (5.22) Peptide Signal:   %s   cut: 20 range:20-710
Sequence
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Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MAAPRFLCAVLISILATQAIQVAAKCPFHFGRARMDDDVGAILQAEPRRMLTSADVKAVNELNLDAVKADLKALFLDSKDWWPADFGNYGPLMIRMAWHCAGSYRTSDGRGGCDGARQRF
DPERSWADNTSLDKARKLLWPIKEKYGSALSWGDLMILAGNTAIESMGGPILGFCAGRIDDADGSASEPLGPSLDQEMVAPCSVNGECEAPLGASTMELIYVNPEGPLGNPVPELSAPQI
RDIFGRMAMNDSETVALVGGGHAFGKCHGACPTGPGPSPRQQPWDPWPGTCGNGTMKGKGENTFTSGFDGPWTTQPTKWDNEYYQNLLKYDWEVYMGPGGHHQWRPVKKDPSDPEELPDI
IMLTADVALTRDPAYLEIVKLYASDLGALERAFSHAWYKLTTRDMGPYTRCLGSQVPPPQPFQAPLPPPPATLPDFKAVSKAIAKALRTASPALEGDLVGGKPYYGALFANLAYQCACSF
RQTDYTGGCNGARIRFSPQKDWPNNVAMDRVLAVLEPIKASFPTLTYSDLIVLAGSNALTDAKAKGIRFCPGRSDADPNEPPAPVYPPRTMNNKIAQLMDNGIVMGLDMREMVAIQARLR
SPSQQRRLGFSGSWTNDASKLTNEYFRVLLDNDWVNVTSSAGQLEMKAVGKEGIYMTPTDLAIKWDAVLSAIAQEFATDATAFYTAFASAWNKMMIADRFKGPTANECPS*

Retrieve as FASTA  
Remarks Complete sequence from genomic (10 introns) and 24 ESTs. Incorrect splicing prediction from Phytozome => confirmed with EST (FD830641.1).
DNA ►
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.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCGGCACCAAGATTTCTTTGCGCTGTATTGATCTCAATACTAGCGACGCAAGCAATCCAGGTGGCTGCGAAGTGTCCCTTTCACTTCGGCCGGGCCCGTATGGACGACGATGTCGGT
GCTATCCTCCAGGCGGAACCGCGCAGAGGCAGGTGCTTGCTAACCTGTTGGCTTTCTGTTCTACTGTAAATGTCCATTGGATGCCTCATTCGGAGGCTCAAGGCCCTGTACTGCGTTTGC
AGCAATGCCGAGCGTAGCGGCTTTTATAGCGAGCACCAAGATCACCATACCCAACAGATATTAAACGAGATTTGTTGTTTTTTGAGCTTAGGAGAGCAGTTCGAATGCTACCGAGGCTCG
GTTTCAGTTTCCCATAGGAGTTGGCGCCGTCCCAGATATCCGATCCACATGAACCTGAACTGAATCAATGGAGAATTTCACTTCCATCTGTCAATTATCCCGCGATTTCATTTGTATTGT
TACTTATTCCGCGACATATGCTTTCGCAATCGTAACCTGCCGACATTCACGTGTTCTGTCGCAATAAATTGACCCCTTCTTTTCACGTAGGCTCCAATACTGGCATCTTCCTAATCTTAT
AATGAATCCATTCTGCCCTTTCCTCCCAGGATGCTGACATCTGCTGATGTCAAAGCTGTGAATGAGCTCAACCTTGACGCTGTCAAGGCAGACCTGAAAGCTCTCTTTCTTGATTCGAAG
GACTGGTGGCCAGCAGATTTTGGAAACTACGGACCTCTCATGATCCGCATGGCTTGGCACTGCGCCGGCTCGTATCGCACGTCGGATGGCCGTGGCGGCTGTGATGGTGCTCGGCAAAGA
GGTATGCGGAGACCTCCAGCCCTTGAATGCATGCACTTTAAGTGCGAAGTCATGAAATATATATTCTATGAGATTGTTATTATAACAGAAACATTTCTAGCCATAAACTGTATTGAAGTT
CGACTCGACCATCGACTTTACAAGCCCATATCGACAGTTATCGGAATGTTTCTTTTCCACATCTACAGGTTCGATCCCGAGCGTTCCTGGGCCGACAACACGAGTCTGGACAAGGCCCGC
AAGCTGCTATGGCCCATCAAGGAGAAGTACGGCAGTGCGCTTTCCTGGGGTGACCTCATGATCCTCGCGGGTAACACGGCCATTGAGTCTATGGGCGGCCCCATCCTGGGCTTCTGCGCG
GGCCGCATCGACGACGCGGACGGCAGCGCCTCCGAACCCCTGGGCCCCTCCCTGGATCAGGAAATGGTCGCTCCCTGCTCCGTAAATGGGGAGTGCGAGAGGTGAGTGCCACATCGACAT
GGACCCCACCAATTTCCCTGTCCATTTGTAACGTTGCAAACCGGACGAAGGTACTCGTGCCGTAACGATACTTCAGCTTCCGACCTCCCATTAGGGGGGTCAGTCCTCTGCTCTGCTCGC
CACCTAGGCAGAAGTAACACCAAAAAGAAGACTGTGCACCTCATGTAATAAATGGTATATAATAAACCATCAAATAAATAAACTGCTTGTTTACGACAGTTTCTTATCCCAGCAAGATAA
GACCTTGTTGTGGCGTTCGGGCTTCAGTTTAGTTGCCTCCTTCCGTACTCCTCTCTCTCGCCAGGCGCCCCTCGGCGCCTCCACCATGGAGCTCATCTACGTCAACCCCGAGGGCCCCCT
GGGCAACCCGGTTCCGGAGCTGAGTGCGCCCCAAATTCGGGATATCTTCGGTCGCATGTGGTGGGTCGTACGGATCATCACGTGCTAGTAGTAAGTCCGTAGCGGGAAGTAAAAAAGCTG
ATCGTTTTGCTGCGGTCGCTGAGGTACGGTGCTCTGGTTGTGGCAGATGACGCCATATCTGCATGTCAATGTGAATATCCCAACTGGCCATGCATGCTTCCTCTTACTGCATGACGTTTT
GAAATCTGGCGCTGACAGCTTTGGATACGTATTGTGGTGTAGATCGCAGCATCTACATAGCTGAGCTAAAAATTGGAAAATATTGCCGCAGTCCGCTGTGTTTACATGATGCTGCTGGAT
TTCTTGTACGCTTTCTTGGCGCCAACCACTCCCCGCAATGAACGACACCACAACGATACCCAACCCACATCACTCCGTACCTTGCCCTGCCGTACCGTACCGTGCCGTATCGTTCGGCAC
AGGCTATGAACGACTCTGAGACGGTGGCGCTGGTTGGCGGCGGACACGCCTTCGGCAAGTGCCACGCGGTGCGTCTTGTTGGAGGGGGGGGTGGGTGGGGCTCGCAACGTGAGCTGCGTG
TACCTCTCGTCATGTACCTCGTCCCTGGTAACCTTGCTAGCCTCGGTCTGCTTGCTGTCCCCCAAACGACCTCACCAACTGCCTGTCCTTCCTAGTTTTAATTATTTGGCTTCATATGAA
TGATCGATCGATCGATCAAGGCCAATTGTGACCTGAGCTCCCGTCCCGTTCCGTACCTTCAGGCGCCTGCCCGACTGGCCCCGGCCCCAGCCCCCGACAGCAGCCTTGGGACCCGTGGCC
CGGCACCTGCGGCAACGGCACTATGAAGGGCAAGGGCGAGAACACCTTCACCAGCGGCTTCGACGGCCCCTGGACCACCCAGCCTACCAAGTGGGACAACGAATACTACCAGAGGTGGGC
CGGAAAGTGGTGGCGTTGAAAGACCATGAGGAGATGCATCTGGAGATCACATCTAGGGTGGTTTGGGCAGTTGGCGGCATGTATGGATGCATGCGGGCAGGCAGTGGGGGCGGAAGGCTC
CGATCAAACGTTTCTCAAATTAGAATACAATGCCATGCCGACCATCCATCACTGCGTGTGTGTGTGTGTGTTTGCGTGTTTGTGTGTGTGTGTGTGTTTGCGTGTTTGTGTGTGTGTGTG
TGTGTTTTTATGGCATCCGTATTCACAGAACCTGCTCAAGTATGACTGGGAGGTGTACATGGGCCCCGGAGGCCACCACCAGTGGCGCCCCGTCAAGAAGGACCCCTCTGACCCGGAGGA
GCTGCCGGACATCATCATGCTCACGGCGGACGTCGCCCTCACCCGGGACCCGGCCTACCTCGAGATCGTCAAGCTCTACGCCTCCGACTTGGGCGCCCTGGAGCGCGCATTCAGCCATGC
GTGGTACAAGCTCACGACCCGCGATATGGGCCCATACACGCGCTGCCTGGGCAGTCAGGTGCCTCCGCCGCAGCCCTTCCAGGCGCCCCTGCCGCCGCCGCCAGCAACACTGCCCGACTT
CAAGGCCGTGTCCAAGGCCATTGCCAAGGCCCTGCGTACTGCCAGCCCGGCGCTGGAAGGCGACTTGGTGGGCGGCAAGCCGTACTACGGCGCGCTGTTCGCCAACCTGGCGTATCAGTG
TGCGTGCAGCTTCCGCCAGACGGATTACACTGGCGGCTGCAACGGTGCGCGCATCCGGTTCTCTCCGCAGAAGGACTGGCCCAACAACGTGGCCATGGACAGAGGTGCGTGCGTGAGAGG
AGGAGGAGGAGGCGCCTCACTGCACCTGCGAGATGGATGGGCGGGACAGGGGGCGCGTGAGACGGAATTGCACGTTGTGCTACGACCTGATGAGCGTCCTGACTTGTGACAGTGATAGGT
TTGGAGCCTTTTATAAAAAAAGGTGAACGGGCCCCGTAGTCGCATGTGGCCATGTGTGGGTGTATGTGGGGGGTGTTGGGTGGCCTTTGGCATCTCGAGGGGCCTTATAAACCGGCGCGC
CGTATTACTAGAACCTGCCCAAGCCCAAGCCCAAGCGGAGTCAACAACCAACTAATAACCGAAATGGACCAACGAACCGACATTTGTGTGCTCGCAGGGTGTTGGCAGTTTTGGAGCCGA
TCAAGGCCAGCTTCCCCACTCTGACGTACTCGGACCTCATCGTGCTGGCCGGCAGTAACGCCCTCACGGATGCGAAGGCCAAGGGCATCCGGTTCTGCCCGGGCCGCTCCGATGCCGACC
CCAACGAGCCGCCCGCACCCGTCTATCCGCCACGTACCATGAATAACAAAAGTGAGGAGGCGGGCATGGCGGGAAATTTGGGGAATATATGGCCGTCTGTGTGTATGTGTGTGTGTGTGT
GCGTGTGTGTGTGCGTGTGTGGCTTAAGGGTTAGGGGCGTGCGATCAGGGGCTGGGGCTTTTGCCAGGTTTGAAGGCAGGAATGTGGGGGTTTTGGTGACACGTGGTCATTTCAGCTGGG
CACTTCACTCACCCGCCCGCCGATCCGACGACCCGCAATCATACACCGCCAATGTGTGCAGGATTGCGCAGTTGATGGACAACGGCATTGTGATGGGTCTTGATATGCGTGAGATGGTGG
CCATCCAGGCCCGACTGCGCAGCCCCTCTCAGCAGCGCCGCCTGGGCTTCAGCGGCAGCTGGACCAACGACGCCTCCAAGCTCACCAACGAGTACTTCCGGGGGTGGGTGGGAGGTGCGC
GCGGGTCTGTCCGCGTTCCCGTAGGCGCCGCAATGCACTGCGAACACTTAGCACTTTCTACGTGTGCTACATTTAATATTTATAATCCGTACGAATGGCTGAATTTATTCACCTAGAATT
CGTTGTGAGTGGGATACGGGAAGGAGGTACACGTACAATAATACTTGGTTTGCGGCCATTGATTTTATTTATTGCTTTTGCTGCTTCTGCTGCTGCTCCAGCCACCTGCCACCTGCCGCT
CGTCTACACCCTCGTCTGCTCTCCCACCGCCTCCTTCGCGCTCTCCGCCCGCCCTGTGCAGGTGCTGCTGGATAACGACTGGGTGAACGTGACCTCGTCTGCCGGTCAACTGGAGATGAA
GGCTGTCGGCAAGGAGGGCATCTACATGACACCAACCGACCTGGCAATCAAGTGGGATGCCGTACTGTCCGCCATCGCGCAGAGGTAAACCATCGATGACTCCAGGGCCGTGGGCAGCAC
AACGTTGTGAGGGGGTTGCGCTGACGGCGAATATGCGGGAAGGAATGCCTTGAGAAAACGTTGTTGTACGGTTTGTGATAGCGAGCGCGACGCGCTGATGCATGGTCTGACCGGAAAGGA
TGATCGCGATTGTTCCGCAACTAGCTTAACTATAATTAGTTTAATTATTAACGGTAATATTCTGTCAAATCCCGCGCAGGAGTTCGCGACTGATGCCACGGCCTTCTACACTGCCTTTGC
ATCCGCCTGGAACAAGATGATGATTGCCGATCGGTTTAAGGGTCCCACCGCCAACGAGTGTCCGTCTTGA

Retrieve as FASTA  
CDS►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCGGCACCAAGATTTCTTTGCGCTGTATTGATCTCAATACTAGCGACGCAAGCAATCCAGGTGGCTGCGAAGTGTCCCTTTCACTTCGGCCGGGCCCGTATGGACGACGATGTCGGT
GCTATCCTCCAGGCGGAACCGCGCAGGATGCTGACATCTGCTGATGTCAAAGCTGTGAATGAGCTCAACCTTGACGCTGTCAAGGCAGACCTGAAAGCTCTCTTTCTTGATTCGAAGGAC
TGGTGGCCAGCAGATTTTGGAAACTACGGACCTCTCATGATCCGCATGGCTTGGCACTGCGCCGGCTCGTATCGCACGTCGGATGGCCGTGGCGGCTGTGATGGTGCTCGGCAAAGGTTC
GATCCCGAGCGTTCCTGGGCCGACAACACGAGTCTGGACAAGGCCCGCAAGCTGCTATGGCCCATCAAGGAGAAGTACGGCAGTGCGCTTTCCTGGGGTGACCTCATGATCCTCGCGGGT
AACACGGCCATTGAGTCTATGGGCGGCCCCATCCTGGGCTTCTGCGCGGGCCGCATCGACGACGCGGACGGCAGCGCCTCCGAACCCCTGGGCCCCTCCCTGGATCAGGAAATGGTCGCT
CCCTGCTCCGTAAATGGGGAGTGCGAGGCGCCCCTCGGCGCCTCCACCATGGAGCTCATCTACGTCAACCCCGAGGGCCCCCTGGGCAACCCGGTTCCGGAGCTGAGTGCGCCCCAAATT
CGGGATATCTTCGGTCGCATGGCTATGAACGACTCTGAGACGGTGGCGCTGGTTGGCGGCGGACACGCCTTCGGCAAGTGCCACGGCGCCTGCCCGACTGGCCCCGGCCCCAGCCCCCGA
CAGCAGCCTTGGGACCCGTGGCCCGGCACCTGCGGCAACGGCACTATGAAGGGCAAGGGCGAGAACACCTTCACCAGCGGCTTCGACGGCCCCTGGACCACCCAGCCTACCAAGTGGGAC
AACGAATACTACCAGAACCTGCTCAAGTATGACTGGGAGGTGTACATGGGCCCCGGAGGCCACCACCAGTGGCGCCCCGTCAAGAAGGACCCCTCTGACCCGGAGGAGCTGCCGGACATC
ATCATGCTCACGGCGGACGTCGCCCTCACCCGGGACCCGGCCTACCTCGAGATCGTCAAGCTCTACGCCTCCGACTTGGGCGCCCTGGAGCGCGCATTCAGCCATGCGTGGTACAAGCTC
ACGACCCGCGATATGGGCCCATACACGCGCTGCCTGGGCAGTCAGGTGCCTCCGCCGCAGCCCTTCCAGGCGCCCCTGCCGCCGCCGCCAGCAACACTGCCCGACTTCAAGGCCGTGTCC
AAGGCCATTGCCAAGGCCCTGCGTACTGCCAGCCCGGCGCTGGAAGGCGACTTGGTGGGCGGCAAGCCGTACTACGGCGCGCTGTTCGCCAACCTGGCGTATCAGTGTGCGTGCAGCTTC
CGCCAGACGGATTACACTGGCGGCTGCAACGGTGCGCGCATCCGGTTCTCTCCGCAGAAGGACTGGCCCAACAACGTGGCCATGGACAGGGTGTTGGCAGTTTTGGAGCCGATCAAGGCC
AGCTTCCCCACTCTGACGTACTCGGACCTCATCGTGCTGGCCGGCAGTAACGCCCTCACGGATGCGAAGGCCAAGGGCATCCGGTTCTGCCCGGGCCGCTCCGATGCCGACCCCAACGAG
CCGCCCGCACCCGTCTATCCGCCACGTACCATGAATAACAAGATTGCGCAGTTGATGGACAACGGCATTGTGATGGGTCTTGATATGCGTGAGATGGTGGCCATCCAGGCCCGACTGCGC
AGCCCCTCTCAGCAGCGCCGCCTGGGCTTCAGCGGCAGCTGGACCAACGACGCCTCCAAGCTCACCAACGAGTACTTCCGGGTGCTGCTGGATAACGACTGGGTGAACGTGACCTCGTCT
GCCGGTCAACTGGAGATGAAGGCTGTCGGCAAGGAGGGCATCTACATGACACCAACCGACCTGGCAATCAAGTGGGATGCCGTACTGTCCGCCATCGCGCAGGAGTTCGCGACTGATGCC
ACGGCCTTCTACACTGCCTTTGCATCCGCCTGGAACAAGATGATGATTGCCGATCGGTTTAAGGGTCCCACCGCCAACGAGTGTCCGTCTTGA

Retrieve as FASTA