Entry information : VcaCP01
Entry ID 8373
Creation 2011-05-12 (Christophe Dunand)
Last sequence changes 2011-05-12 (Christophe Dunand)
Sequence status complete
Reviewer Marcel Zamocky
Last annotation changes 2012-01-18 (Christophe Dunand)
Peroxidase information: VcaCP01
Name VcaCP01
Class Catalase peroxidase    [Orthogroup: CP002]
Taxonomy Eukaryota Viridiplantae Chlorophyta Chlorophyceae Volvocaceae Volvox
Organism Volvox carteri    [TaxId: 3067 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value VcaCP01
start..stop
S start..stop
CreCP01 801 0 25..708 21..729
PulCP01 743 0 25..701 25..686
PsojCP 741 0 7..701 5..683
PiCP01 736 0 7..700 8..685
Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '8373' 'join(623660..623805,624287..624496,624684..624954,625278..625391,625814..625877,626112..626281,626556..627109,627463..627654,627905..628064,628383..628523,628759..628869)' Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 623660..623805 144 N° 2 624287..624496 208 N° 3 624684..624954 269 N° 4 625278..625391 112
N° 5 625814..625877 62 N° 6 626112..626281 168 N° 7 626556..627109 552 N° 8 627463..627654 190
N° 9 627905..628064 158 N° 10 628383..628523 139 N° 11 628759..628869 109  
join(623660..623805,624287..624496,624684..624954,625278..625391,625814..625877, 626112..626281,626556..627109,627463..627654,627905..628064,628383..628523,62875 9..628869)


exon

Literature and cross-references VcaCP01
Literature Prochnik S., Umen J., Nedelcu A.M., Hallmann A., Miller S.M., Nishii I., Ferris P., Kuo Al. Mitros T. et al. (2010) Genomic Analysis of Organismal Complexity in the Multicellular Green Alga Volvox carteri. Science 329:223-226.
Protein ref. UniProtKB:   D8UCP0 [Incorrect prediction]
DNA ref. Phytozome 12:   scaffold_60 (623660..628869)
Cluster/Prediction ref. UniGene:   Vca.1617 [5' end]  Vca.1438 [3' end]
Protein sequence: VcaCP01
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   710 (691)
PWM (Da):   %s   77173.99 (75116.9) Transmb domain:   %s   o15-37i
PI (pH):   %s   5.33 (5.22) Peptide Signal:   %s   cut: 20 range:20-710
Sequence
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Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MAAPRFLCAVLISILATQAIQVAAKCPFHFGRARMDDDVGAILQAEPRRMLTSADVKAVNELNLDAVKADLKALFLDSKDWWPADFGNYGPLMIRMAWHCAGSYRTSDGRGGCDGARQRF
DPERSWADNTSLDKARKLLWPIKEKYGSALSWGDLMILAGNTAIESMGGPILGFCAGRIDDADGSASEPLGPSLDQEMVAPCSVNGECEAPLGASTMELIYVNPEGPLGNPVPELSAPQI
RDIFGRMAMNDSETVALVGGGHAFGKCHGACPTGPGPSPRQQPWDPWPGTCGNGTMKGKGENTFTSGFDGPWTTQPTKWDNEYYQNLLKYDWEVYMGPGGHHQWRPVKKDPSDPEELPDI
IMLTADVALTRDPAYLEIVKLYASDLGALERAFSHAWYKLTTRDMGPYTRCLGSQVPPPQPFQAPLPPPPATLPDFKAVSKAIAKALRTASPALEGDLVGGKPYYGALFANLAYQCACSF
RQTDYTGGCNGARIRFSPQKDWPNNVAMDRVLAVLEPIKASFPTLTYSDLIVLAGSNALTDAKAKGIRFCPGRSDADPNEPPAPVYPPRTMNNKIAQLMDNGIVMGLDMREMVAIQARLR
SPSQQRRLGFSGSWTNDASKLTNEYFRVLLDNDWVNVTSSAGQLEMKAVGKEGIYMTPTDLAIKWDAVLSAIAQEFATDATAFYTAFASAWNKMMIADRFKGPTANECPS*

Retrieve as FASTA  
Remarks Complete sequence from genomic (10 introns) and 24 ESTs. Incorrect splicing prediction from Phytozome => confirmed with EST (FD830641.1).
DNA
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.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCGGCACCAAGATTTCTTTGCGCTGTATTGATCTCAATACTAGCGACGCAAGCAATCCAGGTGGCTGCGAAGTGTCCCTTTCACTTCGGCCGGGCCCGTATGGACGACGATGTCGGT
GCTATCCTCCAGGCGGAACCGCGCAG
AGGCAGGTGCTTGCTAACCTGTTGGCTTTCTGTTCTACTGTAAATGTCCATTGGATGCCTCATTCGGAGGCTCAAGGCCCTGTACTGCGTTTGC
AGCAATGCCGAGCGTAGCGGCTTTTATAGCGAGCACCAAGATCACCATACCCAACAGATATTAAACGAGATTTGTTGTTTTTTGAGCTTAGGAGAGCAGTTCGAATGCTACCGAGGCTCG
GTTTCAGTTTCCCATAGGAGTTGGCGCCGTCCCAGATATCCGATCCACATGAACCTGAACTGAATCAATGGAGAATTTCACTTCCATCTGTCAATTATCCCGCGATTTCATTTGTATTGT
TACTTATTCCGCGACATATGCTTTCGCAATCGTAACCTGCCGACATTCACGTGTTCTGTCGCAATAAATTGACCCCTTCTTTTCACGTAGGCTCCAATACTGGCATCTTCCTAATCTTAT
AATGAATCCATTCTGCCCTTTCCTCCCAGGATGCTGACATCTGCTGATGTCAAAGCTGTGAATGAGCTCAACCTTGACGCTGTCAAGGCAGACCTGAAAGCTCTCTTTCTTGATTCGAAG
GACTGGTGGCCAGCAGATTTTGGAAACTACGGACCTCTCATGATCCGCATGGCTTGGCACTGCGCCGGCTCGTATCGCACGTCGGATGGCCGTGGCGGCTGTGATGGTGCTCGGCAAAG
A
GGTATGCGGAGACCTCCAGCCCTTGAATGCATGCACTTTAAGTGCGAAGTCATGAAATATATATTCTATGAGATTGTTATTATAACAGAAACATTTCTAGCCATAAACTGTATTGAAGTT
CGACTCGACCATCGACTTTACAAGCCCATATCGACAGTTATCGGAATGTTTCTTTTCCACATCTACAGGTTCGATCCCGAGCGTTCCTGGGCCGACAACACGAGTCTGGACAAGGCCCGC
AAGCTGCTATGGCCCATCAAGGAGAAGTACGGCAGTGCGCTTTCCTGGGGTGACCTCATGATCCTCGCGGGTAACACGGCCATTGAGTCTATGGGCGGCCCCATCCTGGGCTTCTGCGCG
GGCCGCATCGACGACGCGGACGGCAGCGCCTCCGAACCCCTGGGCCCCTCCCTGGATCAGGAAATGGTCGCTCCCTGCTCCGTAAATGGGGAGTGCGAG
AGGTGAGTGCCACATCGACAT
GGACCCCACCAATTTCCCTGTCCATTTGTAACGTTGCAAACCGGACGAAGGTACTCGTGCCGTAACGATACTTCAGCTTCCGACCTCCCATTAGGGGGGTCAGTCCTCTGCTCTGCTCGC
CACCTAGGCAGAAGTAACACCAAAAAGAAGACTGTGCACCTCATGTAATAAATGGTATATAATAAACCATCAAATAAATAAACTGCTTGTTTACGACAGTTTCTTATCCCAGCAAGATAA
GACCTTGTTGTGGCGTTCGGGCTTCAGTTTAGTTGCCTCCTTCCGTACTCCTCTCTCTCGCCAGGCGCCCCTCGGCGCCTCCACCATGGAGCTCATCTACGTCAACCCCGAGGGCCCCCT
GGGCAACCCGGTTCCGGAGCTGAGTGCGCCCCAAATTCGGGATATCTTCGGTCGCATG
TGGTGGGTCGTACGGATCATCACGTGCTAGTAGTAAGTCCGTAGCGGGAAGTAAAAAAGCTG
ATCGTTTTGCTGCGGTCGCTGAGGTACGGTGCTCTGGTTGTGGCAGATGACGCCATATCTGCATGTCAATGTGAATATCCCAACTGGCCATGCATGCTTCCTCTTACTGCATGACGTTTT
GAAATCTGGCGCTGACAGCTTTGGATACGTATTGTGGTGTAGATCGCAGCATCTACATAGCTGAGCTAAAAATTGGAAAATATTGCCGCAGTCCGCTGTGTTTACATGATGCTGCTGGAT
TTCTTGTACGCTTTCTTGGCGCCAACCACTCCCCGCAATGAACGACACCACAACGATACCCAACCCACATCACTCCGTACCTTGCCCTGCCGTACCGTACCGTGCCGTATCGTTCGGCAC
AGGCTATGAACGACTCTGAGACGGTGGCGCTGGTTGGCGGCGGACACGCCTTCGGCAAGTGCCACGCGGTGCGTCTTGTTGGAGGGGGGGGTGGGTGGGGCTCGCAACGTGAGCTGCGTG
TACCTCTCGTCATGTACCTCGTCCCTGGTAACCTTGCTAGCCTCGGTCTGCTTGCTGTCCCCCAAACGACCTCACCAACTGCCTGTCCTTCCTAGTTTTAATTATTTGGCTTCATATGAA
TGATCGATCGATCGATCAAGGCCAATTGTGACCTGAGCTCCCGTCCCGTTCCGTACCTTCAGGCGCCTGCCCGACTGGCCCCGGCCCCAGCCCCCGACAGCAGCCTTGGGACCCGTGGCC
CGGCACCTGCGGCAACGGCACTATGAAGGGCAAGGGCGAGAACACCTTCACCAGCGGCTTCGACGGCCCCTGGACCACCCAGCCTACCAAGTGGGACAACGAATACTACCAG
AGGTGGGC
CGGAAAGTGGTGGCGTTGAAAGACCATGAGGAGATGCATCTGGAGATCACATCTAGGGTGGTTTGGGCAGTTGGCGGCATGTATGGATGCATGCGGGCAGGCAGTGGGGGCGGAAGGCTC
CGATCAAACGTTTCTCAAATTAGAATACAATGCCATGCCGACCATCCATCACTGCGTGTGTGTGTGTGTGTTTGCGTGTTTGTGTGTGTGTGTGTGTTTGCGTGTTTGTGTGTGTGTGTG
TGTGTTTTTATGGCATCCGTATTCACAGAACCTGCTCAAGTATGACTGGGAGGTGTACATGGGCCCCGGAGGCCACCACCAGTGGCGCCCCGTCAAGAAGGACCCCTCTGACCCGGAGGA
GCTGCCGGACATCATCATGCTCACGGCGGACGTCGCCCTCACCCGGGACCCGGCCTACCTCGAGATCGTCAAGCTCTACGCCTCCGACTTGGGCGCCCTGGAGCGCGCATTCAGCCATGC
GTGGTACAAGCTCACGACCCGCGATATGGGCCCATACACGCGCTGCCTGGGCAGTCAGGTGCCTCCGCCGCAGCCCTTCCAGGCGCCCCTGCCGCCGCCGCCAGCAACACTGCCCGACTT
CAAGGCCGTGTCCAAGGCCATTGCCAAGGCCCTGCGTACTGCCAGCCCGGCGCTGGAAGGCGACTTGGTGGGCGGCAAGCCGTACTACGGCGCGCTGTTCGCCAACCTGGCGTATCAGTG
TGCGTGCAGCTTCCGCCAGACGGATTACACTGGCGGCTGCAACGGTGCGCGCATCCGGTTCTCTCCGCAGAAGGACTGGCCCAACAACGTGGCCATGGACAG
AGGTGCGTGCGTGAGAGG
AGGAGGAGGAGGCGCCTCACTGCACCTGCGAGATGGATGGGCGGGACAGGGGGCGCGTGAGACGGAATTGCACGTTGTGCTACGACCTGATGAGCGTCCTGACTTGTGACAGTGATAGGT
TTGGAGCCTTTTATAAAAAAAGGTGAACGGGCCCCGTAGTCGCATGTGGCCATGTGTGGGTGTATGTGGGGGGTGTTGGGTGGCCTTTGGCATCTCGAGGGGCCTTATAAACCGGCGCGC
CGTATTACTAGAACCTGCCCAAGCCCAAGCCCAAGCGGAGTCAACAACCAACTAATAACCGAAATGGACCAACGAACCGACATTTGTGTGCTCGCAGGGTGTTGGCAGTTTTGGAGCCGA
TCAAGGCCAGCTTCCCCACTCTGACGTACTCGGACCTCATCGTGCTGGCCGGCAGTAACGCCCTCACGGATGCGAAGGCCAAGGGCATCCGGTTCTGCCCGGGCCGCTCCGATGCCGACC
CCAACGAGCCGCCCGCACCCGTCTATCCGCCACGTACCATGAATAACAA
AAGTGAGGAGGCGGGCATGGCGGGAAATTTGGGGAATATATGGCCGTCTGTGTGTATGTGTGTGTGTGTGT
GCGTGTGTGTGTGCGTGTGTGGCTTAAGGGTTAGGGGCGTGCGATCAGGGGCTGGGGCTTTTGCCAGGTTTGAAGGCAGGAATGTGGGGGTTTTGGTGACACGTGGTCATTTCAGCTGGG
CACTTCACTCACCCGCCCGCCGATCCGACGACCCGCAATCATACACCGCCAATGTGTGCAGGATTGCGCAGTTGATGGACAACGGCATTGTGATGGGTCTTGATATGCGTGAGATGGTGG
CCATCCAGGCCCGACTGCGCAGCCCCTCTCAGCAGCGCCGCCTGGGCTTCAGCGGCAGCTGGACCAACGACGCCTCCAAGCTCACCAACGAGTACTTCCGG
GGGTGGGTGGGAGGTGCGC
GCGGGTCTGTCCGCGTTCCCGTAGGCGCCGCAATGCACTGCGAACACTTAGCACTTTCTACGTGTGCTACATTTAATATTTATAATCCGTACGAATGGCTGAATTTATTCACCTAGAATT
CGTTGTGAGTGGGATACGGGAAGGAGGTACACGTACAATAATACTTGGTTTGCGGCCATTGATTTTATTTATTGCTTTTGCTGCTTCTGCTGCTGCTCCAGCCACCTGCCACCTGCCGCT
CGTCTACACCCTCGTCTGCTCTCCCACCGCCTCCTTCGCGCTCTCCGCCCGCCCTGTGCAGGTGCTGCTGGATAACGACTGGGTGAACGTGACCTCGTCTGCCGGTCAACTGGAGATGAA
GGCTGTCGGCAAGGAGGGCATCTACATGACACCAACCGACCTGGCAATCAAGTGGGATGCCGTACTGTCCGCCATCGCGCAG
AGGTAAACCATCGATGACTCCAGGGCCGTGGGCAGCAC
AACGTTGTGAGGGGGTTGCGCTGACGGCGAATATGCGGGAAGGAATGCCTTGAGAAAACGTTGTTGTACGGTTTGTGATAGCGAGCGCGACGCGCTGATGCATGGTCTGACCGGAAAGGA
TGATCGCGATTGTTCCGCAACTAGCTTAACTATAATTAGTTTAATTATTAACGGTAATATTCTGTCAAATCCCGCGCAGGAGTTCGCGACTGATGCCACGGCCTTCTACACTGCCTTTGC
ATCCGCCTGGAACAAGATGATGATTGCCGATCGGTTTAAGGGTCCCACCGCCAACGAGTGTCCGTCTTGA

Retrieve as FASTA  
CDS
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCGGCACCAAGATTTCTTTGCGCTGTATTGATCTCAATACTAGCGACGCAAGCAATCCAGGTGGCTGCGAAGTGTCCCTTTCACTTCGGCCGGGCCCGTATGGACGACGATGTCGGT
GCTATCCTCCAGGCGGAACCGCGCAG
GATGCTGACATCTGCTGATGTCAAAGCTGTGAATGAGCTCAACCTTGACGCTGTCAAGGCAGACCTGAAAGCTCTCTTTCTTGATTCGAAGGAC
TGGTGGCCAGCAGATTTTGGAAACTACGGACCTCTCATGATCCGCATGGCTTGGCACTGCGCCGGCTCGTATCGCACGTCGGATGGCCGTGGCGGCTGTGATGGTGCTCGGCAAAG
GTTC
GATCCCGAGCGTTCCTGGGCCGACAACACGAGTCTGGACAAGGCCCGCAAGCTGCTATGGCCCATCAAGGAGAAGTACGGCAGTGCGCTTTCCTGGGGTGACCTCATGATCCTCGCGGGT
AACACGGCCATTGAGTCTATGGGCGGCCCCATCCTGGGCTTCTGCGCGGGCCGCATCGACGACGCGGACGGCAGCGCCTCCGAACCCCTGGGCCCCTCCCTGGATCAGGAAATGGTCGCT
CCCTGCTCCGTAAATGGGGAGTGCGAG
GCGCCCCTCGGCGCCTCCACCATGGAGCTCATCTACGTCAACCCCGAGGGCCCCCTGGGCAACCCGGTTCCGGAGCTGAGTGCGCCCCAAATT
CGGGATATCTTCGGTCGCATG
GCTATGAACGACTCTGAGACGGTGGCGCTGGTTGGCGGCGGACACGCCTTCGGCAAGTGCCACGGCGCCTGCCCGACTGGCCCCGGCCCCAGCCCCCGA
CAGCAGCCTTGGGACCCGTGGCCCGGCACCTGCGGCAACGGCACTATGAAGGGCAAGGGCGAGAACACCTTCACCAGCGGCTTCGACGGCCCCTGGACCACCCAGCCTACCAAGTGGGAC
AACGAATACTACCAG
AACCTGCTCAAGTATGACTGGGAGGTGTACATGGGCCCCGGAGGCCACCACCAGTGGCGCCCCGTCAAGAAGGACCCCTCTGACCCGGAGGAGCTGCCGGACATC
ATCATGCTCACGGCGGACGTCGCCCTCACCCGGGACCCGGCCTACCTCGAGATCGTCAAGCTCTACGCCTCCGACTTGGGCGCCCTGGAGCGCGCATTCAGCCATGCGTGGTACAAGCTC
ACGACCCGCGATATGGGCCCATACACGCGCTGCCTGGGCAGTCAGGTGCCTCCGCCGCAGCCCTTCCAGGCGCCCCTGCCGCCGCCGCCAGCAACACTGCCCGACTTCAAGGCCGTGTCC
AAGGCCATTGCCAAGGCCCTGCGTACTGCCAGCCCGGCGCTGGAAGGCGACTTGGTGGGCGGCAAGCCGTACTACGGCGCGCTGTTCGCCAACCTGGCGTATCAGTGTGCGTGCAGCTTC
CGCCAGACGGATTACACTGGCGGCTGCAACGGTGCGCGCATCCGGTTCTCTCCGCAGAAGGACTGGCCCAACAACGTGGCCATGGACAG
GGTGTTGGCAGTTTTGGAGCCGATCAAGGCC
AGCTTCCCCACTCTGACGTACTCGGACCTCATCGTGCTGGCCGGCAGTAACGCCCTCACGGATGCGAAGGCCAAGGGCATCCGGTTCTGCCCGGGCCGCTCCGATGCCGACCCCAACGAG
CCGCCCGCACCCGTCTATCCGCCACGTACCATGAATAACAA
GATTGCGCAGTTGATGGACAACGGCATTGTGATGGGTCTTGATATGCGTGAGATGGTGGCCATCCAGGCCCGACTGCGC
AGCCCCTCTCAGCAGCGCCGCCTGGGCTTCAGCGGCAGCTGGACCAACGACGCCTCCAAGCTCACCAACGAGTACTTCCGG
GTGCTGCTGGATAACGACTGGGTGAACGTGACCTCGTCT
GCCGGTCAACTGGAGATGAAGGCTGTCGGCAAGGAGGGCATCTACATGACACCAACCGACCTGGCAATCAAGTGGGATGCCGTACTGTCCGCCATCGCGCAG
GAGTTCGCGACTGATGCC
ACGGCCTTCTACACTGCCTTTGCATCCGCCTGGAACAAGATGATGATTGCCGATCGGTTTAAGGGTCCCACCGCCAACGAGTGTCCGTCTTGA

Retrieve as FASTA