Entry information : NgrKat01
Entry ID 8410
Creation 2011-05-30 (Marcel Zamocky)
Last sequence changes 2011-05-30 (Marcel Zamocky)
Sequence status complete
Reviewer Christophe Dunand
Last annotation changes 2011-05-31 (Christophe Dunand)
Peroxidase information: NgrKat01
Name NgrKat01
Class Catalase    [Orthogroup: Kat001]
Taxonomy Eukaryota Heterolobosea Vahlkampfiidae Naegleria
Organism Naegleria gruberi    [TaxId: 5762 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value NgrKat01
start..stop
S start..stop
PpalKat01 690 0 13..486 6..482
MbaKat01 672 0 10..486 7..483
TthKat01 669 0 10..486 7..481
DdKat01 662 0 12..486 5..482
Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '8410' 'complement(join(75027..76335,76397..76525,76671..76702)) ' Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 76671..76702 30 N° 2 76397..76525 127 N° 3 75027..76335 1307  
complement(join(75027..76335,76397..76525,76671..76702))


exon

Literature and cross-references NgrKat01
Literature Fritz-Laylin L.K., Prochnik S.E., Ginger M.L., Dacks J.B., Carpenter M.L., Field M.C., Kuo A., Paredez A., Chapman J., Pham J., Shu S., Neupane R., Cipriano M., Mancuso J., Tu H., Salamov A., Lindquist E., Shapiro H. , Lucas S., Grigoriev I.V., Cande W.Z., Fulton C., Rokhsar D.S., Dawson S.C. (2010) The genome of Naegleria gruberi illuminates early eukaryotic versatility. Cell 140:631-642.
Protein ref. UniProtKB:   D2VWQ6
DNA ref. GenBank:   GG738905.1 (76702..75027)
EST ref. GenBank:   FE268988.1 [5' end]  FE247030.1 [3' end]
Protein sequence: NgrKat01
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   489 (301)
PWM (Da):   %s   55234.78 (33080.1)  
PI (pH):   %s   8.91 (10.17) Peptide Signal:   %s   cut: 0 range:Ymax-300
Sequence
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MSTNFNYDYTSTLTDEFGHPVADNNNSLTAGNNGPILLQDTYLISKLAHFDRERIPERVVHAKGAGAHGYFEVTHDITKFTKAAFLNRVGKRTPVFARFSTVGGEKGSADSDRDPRGFAV
KFYTEEGNYDFVGNNTPVFFIRDTIKFPDFIHTQKRNPQSNLKDPDAFWDFLSLTPESVHQLTVLFSDRGTPFSYRHMNGYSGHTFKLVNSQGEAFWAKIHFKTEQGIKNLTVEEATRLA
GEDPDHATRDLFNSIKQGSSPAWKVYFQIMPVDDAAKYKVDVFDITKVWAHKDYPLIPVGRMVLNRNPNNYFAETEQSAFSPSNLVPGIEPSLDKMLQGRLFSYPDTHRHRLGANYAQIP
INAPLKAKLNCQFRDGSMTVNGNGGSAPNYEPNTFGGPYEAKQLIEHPTKVQGAITRSKPNHPNDDYVQAGTLYREVMTEYDRSRLVHNIALHLKNAKKEIQLRQLQIFYKADKDYGRRI
AELLGLQNL

Retrieve as FASTA  
Remarks Complete sequence from genomic (2 introns) and 19 ESTs. Strain="NEG-M". Clade 3 catalase with NADPH binding site.
DNA
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
TTACAAGTTTTGCAAGCCCAACAATTCAGCAATTCTACGACCATAATCCTTATCAGCCTTATAGAAGATTTGTAATTGTCTCAATTGAATTTCCTTCTTGGCATTCTTCAAGTGCAAAGC
AATATTGTGAACAAGTCTAGAACGATCATATTCAGTCATAACTTCACGATACAAAGTACACCAGCTTGGACGTAGTCATCATTTGGATGATTTGGCTTGGAACGAGTAATGGCACCTTGA
ACCTTAGTTGGGTGTTCAATCAATTGCTTAGCTTCATATGGACCACCGAATGTGTTTGGTTCATAGTT
TGGAGCAGAACCACCGTTACCATTGACAGTCATGGAACCATCTCTGAATTGA
CAGTTCAATTTTTAGCCTTAAGTGGAGCATTAATTGGAATTTGAGCATAGTTAGCGCCCAATCTATGTCTGTGAGTATCTGGATAAGAGAAAAGTCTACCTTGGAGCATCTTGTCAAGGG
ATGGTTCAATACCAGGAACCAAGTTAGATGGAGAGAATGCAGATTGTTCAGTTTCGGCAAAGTAATTGTTTGGATTACGATTCAAAACCATTCTACCAACTGGAATGAGTGGATAATCCT
TGTGTGCCCAAACCTTAGTAATATCAAAAACATCAACTTTGTACTTGGCAGCATCATCAACTGGCATAATTTGGAAATAAACCTTCCAAGCTGGGCTGCTTCCTTGCTTAATTGAGTTGA
ACAAATCACGAGTAGCATGATCTGGATCTTCACCAGCCAAACGAGTGGCTTCTTCAACAGTCAAATTCTTAATACCTTGTTCAGTCTTGAAGTGAATCTTAGCCCAGAAAGCTTCACCTT
GTGAGTTAACCAATTTGAAAGTGTGACCAGAATAACCGTTCATGTGACGATAAGAAAATGGTGTACCTCTATCACTGAACAAAACAGTAAGTTGGTGAACTGATTCTGGAGTCAAACTCA
AAAAGTCCCAGAATGCATCAGGATCCTTCAAGTTTGATTGTGGATTTCTCTTTTGGGTATGGATAAAATCTGGGAATTTAATAGTGTCACGAATGAAGAAAACTGGAGTATTATTACCAA
CAAAATCATAATTTCCTTCTTCAGTATAGAATTTAACAGCAAAACCTCTTGGATCTCTATCAGAATCGGCACTACCCTTTTCACCACCAACAGTGGAAAAACGAGCAAAAACTGGAGTTC
TCTTACCAACACGATTCAAGAATGCAGCCTTGGTGAATTTAGTGATATCATGAGTGACTTCAAAATAACCATGAGCACCAGCACCCTTTGCGTGAACAACTCTTTCTGGGATTCTATTAT
AATGCAACAATTAAAATGTATAAAATTAATAAAACAATGTCTTATAATACTAACCTTTCACGATCAAAGTGGGCCAATTTGCTGATCAAATAAGTATCTTGCAAAAGGATTGGTCCATTA
TTGCCAGCTGTGAGGGAATTGTTGTTATCAGCAACTGGATGGCCAAATTCATCAGTCAAAGTACTGTTGTTGTATAATAATATTATGAATGATGAAAAGCATTTTAATATTAATCAATCG
ACATATAATTTTAATGTGTCGTAAATTAAAGAAGATAGGAAAATTCGCACAAAATTGATGAGCACTAGGTTATTGCTCTGAAACCTACCTGGTGTAATCGTAGTTAAAGTTGGTAGACAT

Retrieve as FASTA  
CDS
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
TTACAAGTTTTGCAAGCCCAACAATTCAGCAAACCAGCTTGGACGTAGTCATCATTTGGATGATTTGGCTTGGAACGAGTAATGGCACCTTGAACCTTAGTTGGGTGTTCAATCAATTGC
TTAGCTTCATATGGACCACCGAATGTGTTTGGTTCATAGTT
TTAGCCTTAAGTGGAGCATTAATTGGAATTTGAGCATAGTTAGCGCCCAATCTATGTCTGTGAGTATCTGGATAAGAGA
AAAGTCTACCTTGGAGCATCTTGTCAAGGGATGGTTCAATACCAGGAACCAAGTTAGATGGAGAGAATGCAGATTGTTCAGTTTCGGCAAAGTAATTGTTTGGATTACGATTCAAAACCA
TTCTACCAACTGGAATGAGTGGATAATCCTTGTGTGCCCAAACCTTAGTAATATCAAAAACATCAACTTTGTACTTGGCAGCATCATCAACTGGCATAATTTGGAAATAAACCTTCCAAG
CTGGGCTGCTTCCTTGCTTAATTGAGTTGAACAAATCACGAGTAGCATGATCTGGATCTTCACCAGCCAAACGAGTGGCTTCTTCAACAGTCAAATTCTTAATACCTTGTTCAGTCTTGA
AGTGAATCTTAGCCCAGAAAGCTTCACCTTGTGAGTTAACCAATTTGAAAGTGTGACCAGAATAACCGTTCATGTGACGATAAGAAAATGGTGTACCTCTATCACTGAACAAAACAGTAA
GTTGGTGAACTGATTCTGGAGTCAAACTCAAAAAGTCCCAGAATGCATCAGGATCCTTCAAGTTTGATTGTGGATTTCTCTTTTGGGTATGGATAAAATCTGGGAATTTAATAGTGTCAC
GAATGAAGAAAACTGGAGTATTATTACCAACAAAATCATAATTTCCTTCTTCAGTATAGAATTTAACAGCAAAACCTCTTGGATCTCTATCAGAATCGGCACTACCCTTTTCACCACCAA
CAGTGGAAAAACGAGCAAAAACTGGAGTTCTCTTACCAACACGATTCAAGAATGCAGCCTTGGTGAATTTAGTGATATCATGAGTGACTTCAAAATAACCATGAGCACCAGCACCCTTTG
CGTGAACAACTCTTTCTGGGATTCTATTATAATGCAACAATTAAAATGTATAAAATTAATAAAACAATGTCTTATAATACTAACCTTTCACGATCAAAGTGGGCCAATTTGCTGATCAAA
TAAGTATCTTGCAAAAGGATTGGTCCATTATTGCCAGCTGTGAGGGAATTGTTGTTATCAGCAACTGGATGGCCAAATTCATCAGTCAAAGTACTGTTGTTGTATAATAATATTATGAAT
GATGAAAAGCATTTTAATATTAATCAATCGACATATAATTTTAATGTGTCGTAAATTAAAGAAGATAGGAAAATTCGCACAAAATTGATGAGCACTAGGTTATTGCTCTGAAACCTACCT
GGTGTAATCGTAGTTAAAGTTGGTAGACAT

Retrieve as FASTA