RedOxiBase: View Perox 8448

Entry information : AcoAPx-R (AcoGoldSmith_v1.008273m)

Entry ID	8448
Creation	2011-08-09 (Bruno Savelli)
Last sequence changes	2011-10-03 (Christophe Dunand)
Sequence status	complete
Reviewer	Qiang Li
Last annotation changes	2011-12-14 (Qiang Li)

Peroxidase information: AcoAPx-R (AcoGoldSmith_v1.008273m)

Name (synonym)

AcoAPx-R (AcoGoldSmith_v1.008273m)

Class

Ascorbate peroxidase related [Orthogroup: APx-R001]

Taxonomy

Eukaryota Viridiplantae Streptophyta Ranunculaceae Aquilegia

Organism

Aquilegia coerulea [TaxId: 218851 ]

Cellular localisation

N/D

Tissue type

N/D

Inducer

N/D

Repressor

N/D

Best BLASTp hits

Perox	score	E-value	AcoAPx-R start..stop	S start..stop
AfpAPx-R	649	0	2..330	1..332
NnAPx-R01	420	1e-148	5..330	6..334
VvAPx-R	416	4e-147	4..330	5..330
GhAPx-R	414	6e-146	49..329	46..333

Gene structure Fichier

Exons►

Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size
N° 1	957340..957529	190	N° 2	957091..957190	100	N° 3	956884..956999	116	N° 4	956387..956457	71
N° 5	956252..956294	43	N° 6	956067..956163	97	N° 7	955677..955760	84	N° 8	955371..955492	122
N° 9	954971..955037	67	N° 10	954025..954127	103
complement(join(954025..954127,954971..955037,955371..955492,955677..955760,9560 67..956163,956252..956294,956387..956457,956884..956999,957091..957190,957340..9 57529))

Literature and cross-references AcoAPx-R (AcoGoldSmith_v1.008273m)

DNA ref.	Phytozome 12: scaffold_20 (957529..954025)

Protein sequence: AcoAPx-R (AcoGoldSmith_v1.008273m)

Sequence Properties
first value : protein
second value (mature protein)

Length (aa):	330
PWM (Da):	35570.95
PI (pH):	5.5

Sequence 372
Send to BLAST
Send to Peroxiscan

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

MMNGLDPSSICLVNSFSSSFSVKFKLPAKDATTKPSPFKYGGKVIKADAAASSTPSSCNNNDPYCRALNTRRGLLFTATLPFLVGMSESIDDVNAAVTYQTLQEGIKKVVSKGKAAGLLRLVFHDAGTFDKSDNSGGMNGSIVYELDRPENAGLKKSVKILEKARSELDEREQVSWADMIAVAGAEAVSVCGGPVIPVQLGRVDSMVPDPEGKLPEESLDAFGLKQCFLGKGFSTQELVALSGAHTLGSKGFGNPIAFDNTYFKILLEKPWLSSAGMSNMVGLPSDRALPEDDECLRWIKIYADDQNTFFEDFKNAYIKLVNSGVSWKTI*

Retrieve as FASTA

Remarks

DNA ►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

ATGATGAACGGTTTAGATCCTTCGTCAATCTGCTTAGTCAATTCTTTCTCTTCTTCCTTTTCCGTCAAATTTAAATTGCCCGCCAAAGATGCAACAACGAAACCCTCTCCGTTCAAATAT
GGCGGGAAAGTTATCAAAGCTGATGCTGCTGCTTCTTCCACCCCTTCTAGCTGCAATAATAATGACCCATGTATAGTAACTCGTCATTTTCATAATTTTATTTAATTTGTAATTCAAGTA
AAGTTAGGATCTTTGGTTTAAACCAAGGTCGGACTCGGTTCAATAGTTTGGCATTTCTTGATGATAATTATTACTTGGAAGTTATTTTGAATTTTGTAGATTGTCGCGCTTTAAACACAA
GAAGAGGACTTCTTTTTACAGCAACATTACCATTTCTTGTTGGAATGAGTGAATCCATTGATGATGTAAATGCCGCTGTGTAAGTTCAAGTATCAGGTTTACATAAATTCTAGTATATTT
TTTGTTTGCTGACTGGACACTGATTTGGTGAGTTTCTTTCCAATTTCTAGTACATATCAAACTTTACAGGAAGGAATAAAGAAGGTAGTGTCTAAAGGAAAGGCTGCTGGTTTACTTCGT
CTTGTTTTTCATGATGCGGGAACGTTTGACAAGAGTGATAATTCAGGTGACATTATTGAATGATTTGATGTTCCCAAGTTTATATATAATCTGATATAATTTGTATAGTGCTTCTTGCAA
GTATAAGCGTACTTATATTAGCCACCAACTCAGTGATTTGTCAAGGGTGTCAACGTAGAAACTTTCTATACAACTGATACATCACTTTTGCATAGTCTTAACAAATTAGTTTTGATTCAC
AAGTCTTAAGTGAACACATGATCAATACATCTGTTTCTTCCTTTGTCCCTCTTCTCCATTCATCCATTCTTCCTAGACTTGGTTAATTTTGATAATTAAACTCTATTTAATCTCTCGTAT
ATTGTCAGCAGGCTGCAGGCCAGCCTAACTAGTAACTACTGTTATTATGAAGAGTTTATTAATGTATGCTACCTCTCTAAAAATGTTACTCTACTTGATTATCATCTTATAGGTGGTATG
AATGGTTCCATAGTTTATGAACTTGACAGACCAGAAAATGCAGGTCTTAAGAAATCTGTAAAGGTAAGTTCTATCTCTCTCTATATAAGGTTCCACTATCAAATGATGTTGGCTTGATTA
CCAACCACCTAATTCAAGATATGCATTGTCTTCAGATTCTAGAGAAAGCGAGAAGCGAACTAGATGAAAGAGAACAAGGTAACTGAACTGAGACTGTTAAAGGATGTTTAAGTATAAAGA
ATATAAATTTTATATCCTAACACATGGCTGGAATTCTACATATTAGTTTCATGGGCAGACATGATTGCAGTTGCCGGTGCCGAAGCAGTTTCTGTATGTGGGGGTCCAGTAATTCCAGTC
CAGTTGGGCAGAGTCGATTCTATGTAAGAAGCTACTTTCAGTATCTTAAGTTGCAATAACTTTAAATGAACCTCAGACTCCTAGAGCTGAATTCAGCTTGGATCAATCATAAGTAATACT
TGAAATGAATGCTACTGGTTCACTGTTTTACAAGAGTATCCTGTAATATTCTGGGTTTTTAGGTCATGGAAAACCAATTAAATTTTGATTTAGAGAAGTCTTGCTATCAACTTGAAGTCA
GCACAATATAGTTCTTTATTCCATGTTTTGTCATTTGCAGACTACAATATTCTATGCTGCAAATTCTGAGGATTAATTTTCCCTGGTAGGGTGCCTGATCCTGAAGGTAAACTTCCTGAA
GAATCTTTGGATGCATTTGGATTAAAACAGTGCTTTCTGGGAAAAGGCTTCTCGTGAGTTCCTTCGTACCATTTCATTAGTTCAATGTCTCTTGAATCAAGTCCTTATGTATGGTTTTGT
CCTCATCATCTGTGCATACTTCATAGCATGCCTTACAAATAAAACTCAATGACATATCTTCCTGTCCTGGTTTCAATGATTACCTTCTTTCATCATAATGTAATTCTCGCTGTGCAGCAC
ACAAGAACTTGTCGCCTTGTCTGGAGCTCATACTCTTGGGAGTAAAGGATTTGGAAATCCGATTGCTTTTGACAATACCTACTTTAAAATTCTCTTGGAAAAGCCATGGCTATCTTCAGG
TGAATATTTTGTTGGTTTCATTATTTAAGAACTTGATCCGAGTGAGAATTTTTTTTTTTTTTTGATAATTACCGTGTTAGTGCTCTCTAGCCACATCTACCTGACGTCAAAAGTGATTAG
TAAGTAAAACATATGGGACAGAATGGAAGGACAGCTTCATCCTCAAACATATATGGACTCTCTATTTCTTCCCCCTTTCCAGAGATTTTTGGTTATTGCAACTGGAAAGATAGCTGCTAA
ACGAACGTCTTCCTCTCGCAATTTGTACACCTACTGGTTTATTTGGTTTGAATTATCATATGTTATATATATTCTTTTTGTTTCGCCTGCAGCTGGTATGTCAAATATGGTTGGACTTCC
ATCAGATCGTGCACTCCCTGAAGATGATGAATGCTTAAGGTTCTTCCACCAAATCTTAACACAAATCATCAAAATCTGTCCACACACACTCACACACCTTTTGTTTCTATGTATAAGAAT
GTGAGGTATTACTTATACTTACATTCATAAAAATTTGCTTGATACCCTCCTTGAAGCACATGCACATTGGATTTTTTATTTTTTTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTATTTTTTATAGTACATGCACATTGGATTAGAAAATGTATGATGAGTTTTTATCAATGGGATCAAAAGGAACCATCCCAACTGC
ACAAGGGACTGCCATATTGTCTAAAAGTAACTAAAGCGATAAGGGACTGCCATATCTTCATAGGGTTTACTTACATCTTCCCTGATTTCGTGTTGTCGTGGCAATAAAGAGAGGCACTTA
TTTATGTTTTTGAAGTGGGCTGCTAGCATTTACGGCTCACAGACAGCAGAAGTGTTGCCAGGTGTCATTTGACACTGATATTACTCATGTCCTATATATAATTGGTTTCCAATTATGGCA
AATATGTTCCAAACAATGTAAATTGAACTAATGCATGTTGTCAGTGGGATGTTGAATTGTTTTATGATTGCCAAAGGATAAACTTCATGCCATCTGATTTTTTTAAAGTTACTTCCAAAA
TTGCATTGTTCCAACATGCTTAAGTGATGATAACATATGCAGGTGGATCAAAATATATGCTGATGATCAGAACACATTCTTTGAAGATTTTAAGAATGCTTATATCAAACTCGTCAATTC
TGGGGTGTCGTGGAAGACTATCTGA

Retrieve as FASTA

CDS►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

Retrieve as FASTA