1. Browse the Database
  2. View Redoxidase
Entry information : SbPrx102 (Sobic.007G014200.1 [2.1] / SB07G001280 [1.4])
Entry ID 846
Creation 2005-12-30 (Christophe Dunand)
Last sequence changes 2005-12-30 (Christophe Dunand)
Sequence status complete
Reviewer Messaoudi
Last annotation changes 2014-08-04 (Messaoudi)
Peroxidase information: SbPrx102 (Sobic.007G014200.1 [2.1] / SB07G001280 [1.4])
Name (synonym) SbPrx102 (Sobic.007G014200.1 [2.1] / SB07G001280 [1.4])
Class Class III peroxidase    [Orthogroup: Prx028]
Taxonomy Eukaryota Viridiplantae Streptophyta Monocotyledons Poaceae Sorghum
Organism Sorghum bicolor    [TaxId: 4558 ]
Cellular localisation N/D
Tissue types Leaves
Roots
Seedlings
Inducers Acid treatment
Alkaline treatment
Nitrogen starvation
Oxidative stress
Pathogen interaction
Repressor N/D
Best BLASTp hits
Perox score E-value SbPrx102
start..stop		 S start..stop
ZmPrx15 565 0 24..319 27..322
SiPrx65 491 4.73e-177 9..319 6..319
TaPrx108-1D 474 3.88e-170 5..318 1..318
TaPrx108-1B 474 4.38e-170 5..318 1..318
Gene structure Fichier Exons►
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 1265922..1266881 958  
join(1265922..1266881)


exon

Literature and cross-references SbPrx102 (Sobic.007G014200.1 [2.1] / SB07G001280 [1.4])
Literature Cordonnier-Pratt,M.-M. et al., unpublished
DNA ref. Phytozome 12:   chromosome_7 (1265922..1266881)
Protein sequence: SbPrx102 (Sobic.007G014200.1 [2.1] / SB07G001280 [1.4])
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   319 (292)
PWM (Da):   %s   34180.96 (31489.4) Transmb domain:   %s   i12-34o
PI (pH):   %s   5.15 (4.76) Peptide Signal:   %s   cut: 28 range:28-319
Sequence
Send to BLAST
Send to Peroxiscan
*.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
MMAKMIAAKN LVKLLVLLQV AAGGGVAALS MDYYSMSCPF AEMMVRSVVY DALAKDPTLA GSLLRLHFHD CFVQGCDASV LIDSTDGNTA EKDAQANKSL RGFEVIDRIK EVLESQCPGV  VSCADVLALA ARDAVLLARG PYYGVPLGRR DGTRSVDSDT FTALPPPFFN TTSLIKLFGS HGFTVQDLVA LSGGHTLGIA HCGNFKARLA ETDTLDAALG SSLGATCAAN GDDGAAPFDR 
TSTRFDTVYY RELQMRRGLL SSDQTLFESP ETKGIVNMFA MNQAYFFYAF QQGMLKMGQL DLKEGDEGEI RHTCGVINS 

Retrieve as FASTA  
Remarks Complete sequence from genomic (chromo 7, no intron) and 5 EST (3'is missing) + TC94126 (4 ESTs) + TC94125 (5 EST, bad sequence for the 5'end).
DNA ►
Send to BLAST
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
ATGATGGCGA AGATGATTGC GGCCAAGAAC CTTGTGAAGC TCCTCGTCCT CCTGCAGGTG GCCGCCGGCG GCGGCGTGGC GGCGCTCAGC ATGGACTACT ACAGCATGAG CTGCCCGTTC  GCGGAGATGA TGGTCCGCAG CGTCGTCTAC GACGCTCTCG CCAAGGACCC CACCCTCGCC GGCAGCCTCC TGAGGCTGCA CTTCCACGAC TGCTTCGTGC AGGGCTGCGA CGCGTCGGTG  CTGATCGACT CGACGGACGG CAACACGGCG GAGAAAGACG CGCAGGCGAA CAAGAGCCTG CGCGGCTTCG AGGTGATCGA CCGCATCAAG GAGGTGCTGG AGTCGCAGTG CCCGGGCGTC  GTCTCCTGCG CCGACGTCCT GGCTCTGGCG GCGCGCGACG CCGTGCTCCT CGCTCGGGGC CCCTACTACG GCGTGCCGCT GGGCCGCCGC GACGGGACGC GGTCGGTGGA CTCGGACACC  TTCACGGCGC TCCCGCCGCC CTTCTTCAAC ACGACGTCGC TCATCAAGCT CTTCGGCTCG CACGGGTTCA CGGTGCAGGA CCTGGTGGCG CTCTCCGGCG GCCACACGCT GGGGATCGCG  CACTGCGGCA ACTTCAAGGC CAGGCTCGCC GAGACGGACA CGCTGGACGC CGCGCTGGGG TCGTCGCTCG GCGCCACCTG CGCCGCCAAC GGGGACGACG GCGCCGCGCC GTTCGACCGG  ACCAGCACCA GGTTCGACAC CGTCTACTAC CGGGAGCTGC AGATGCGGCG AGGGCTCCTG AGCTCCGACC AGACGCTGTT CGAGTCGCCG GAGACCAAGG GCATCGTCAA CATGTTCGCC  ATGAACCAGG CATACTTCTT CTACGCGTTC CAGCAGGGGA TGCTCAAGAT GGGGCAGCTC GACCTCAAGG AAGGCGACGA GGGTGAGATC AGGCACACGT GCGGGGTCAT CAACTCCTAG 

Retrieve as FASTA  
CDS►
Send to BLAST
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
ATGATGGCGA AGATGATTGC GGCCAAGAAC CTTGTGAAGC TCCTCGTCCT CCTGCAGGTG GCCGCCGGCG GCGGCGTGGC GGCGCTCAGC ATGGACTACT ACAGCATGAG CTGCCCGTTC  GCGGAGATGA TGGTCCGCAG CGTCGTCTAC GACGCTCTCG CCAAGGACCC CACCCTCGCC GGCAGCCTCC TGAGGCTGCA CTTCCACGAC TGCTTCGTGC AGGGCTGCGA CGCGTCGGTG  CTGATCGACT CGACGGACGG CAACACGGCG GAGAAAGACG CGCAGGCGAA CAAGAGCCTG CGCGGCTTCG AGGTGATCGA CCGCATCAAG GAGGTGCTGG AGTCGCAGTG CCCGGGCGTC  GTCTCCTGCG CCGACGTCCT GGCTCTGGCG GCGCGCGACG CCGTGCTCCT CGCTCGGGGC CCCTACTACG GCGTGCCGCT GGGCCGCCGC GACGGGACGC GGTCGGTGGA CTCGGACACC  TTCACGGCGC TCCCGCCGCC CTTCTTCAAC ACGACGTCGC TCATCAAGCT CTTCGGCTCG CACGGGTTCA CGGTGCAGGA CCTGGTGGCG CTCTCCGGCG GCCACACGCT GGGGATCGCG  CACTGCGGCA ACTTCAAGGC CAGGCTCGCC GAGACGGACA CGCTGGACGC CGCGCTGGGG TCGTCGCTCG GCGCCACCTG CGCCGCCAAC GGGGACGACG GCGCCGCGCC GTTCGACCGG  ACCAGCACCA GGTTCGACAC CGTCTACTAC CGGGAGCTGC AGATGCGGCG AGGGCTCCTG AGCTCCGACC AGACGCTGTT CGAGTCGCCG GAGACCAAGG GCATCGTCAA CATGTTCGCC  ATGAACCAGG CATACTTCTT CTACGCGTTC CAGCAGGGGA TGCTCAAGAT GGGGCAGCTC GACCTCAAGG AAGGCGACGA GGGTGAGATC AGGCACACGT GCGGGGTCAT CAACTCCTAG 

Retrieve as FASTA