Entry information : MtPrx[P]105 ( Medtr5g074770.1[4.0] / Medtr5g082710.1[3.0])
Entry ID 8463
Creation 2011-08-10 (Qiang Li)
Last sequence changes 2016-04-06 (Catherine Mathe)
Sequence status theoretical translation / pseudogene
Reviewer Christophe Dunand
Last annotation changes 2016-04-06 (Christophe Dunand)
Peroxidase information: MtPrx[P]105 ( Medtr5g074770.1[4.0] / Medtr5g082710.1[3.0])
Name (synonym) MtPrx[P]105 ( Medtr5g074770.1[4.0] / Medtr5g082710.1[3.0])
Class Class III peroxidase    [Orthogroup: N/D] N/D
Taxonomy Eukaryota Viridiplantae Streptophyta Fabaceae Medicago
Organism Medicago truncatula (barrel medic)    [TaxId: 3880 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value MtPrx[P]105
start..stop
S start..stop
MtPrx01 186 6e-60 1..131 190..325
GmPrx62 150 1e-45 30..130 253..358
PvPrx10 145 5e-44 1..130 192..326
SroPrx02 137 2e-43 42..130 22..110
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 31771370..31771765 396  
complement(join(31771370..31771765))


exon

Literature and cross-references MtPrx[P]105 ( Medtr5g074770.1[4.0] / Medtr5g082710.1[3.0])
DNA ref. Phytozome 12:   chr5 (31771765..31771370)
Cluster/Prediction ref. Phytozome Gene 12:   31087864
Protein sequence: MtPrx[P]105 ( Medtr5g074770.1[4.0] / Medtr5g082710.1[3.0])
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   130
PWM (Da):   %s   14734.63  
PI (pH):   %s   10.42
Sequence
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
KHLVAINSQK RS*FSPSFGD KWMIVAQVEL DSNNAASSRN VGDNNLTSLD FTPTRVENTY YRDLLYKRGV LHSDQQLFKG QGSESDKLVQ LYSKNPFAFA SDFKTSLIKM GNIKPLTGRQ 
GKIQLNCRRV R* 

Retrieve as FASTA  
Remarks Pseudogene. Incorrect prediction from Phytozome (Stop in frame and long 5' end is missing).
DNA
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
AAGCATCTTG TTGCCATCAA TTCCCAAAAA AGATCTTAGT TCAGCCCATC CTTCGGTGAT AAGTGGATGA TAGTAGCTCA GGTTGAACTT GACAGTAATA ATGCGGCATC TTCTAGAAAT  GTTGGAGACA ACAATTTAAC ATCACTTGAT TTCACTCCTA CAAGAGTTGA AAATACATAT TATAGAGATT TGCTATACAA AAGAGGTGTC CTTCATTCTG ATCAACAATT GTTTAAGGGA  CAAGGTAGTG AAAGTGACAA ATTGGTGCAG CTATATAGTA AGAACCCTTT TGCTTTTGCT AGTGATTTTA AGACTTCTTT GATCAAGATG GGGAACATCA AGCCTCTTAC CGGGAGACAA 
GGCAAGATTC AACTTAATTG TAGAAGGGTC AGATAG 

Retrieve as FASTA  
CDS
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
AAGCATCTTG TTGCCATCAA TTCCCAAAAA AGATCTTAGT TCAGCCCATC CTTCGGTGAT AAGTGGATGA TAGTAGCTCA GGTTGAACTT GACAGTAATA ATGCGGCATC TTCTAGAAAT  GTTGGAGACA ACAATTTAAC ATCACTTGAT TTCACTCCTA CAAGAGTTGA AAATACATAT TATAGAGATT TGCTATACAA AAGAGGTGTC CTTCATTCTG ATCAACAATT GTTTAAGGGA  CAAGGTAGTG AAAGTGACAA ATTGGTGCAG CTATATAGTA AGAACCCTTT TGCTTTTGCT AGTGATTTTA AGACTTCTTT GATCAAGATG GGGAACATCA AGCCTCTTAC CGGGAGACAA 
GGCAAGATTC AACTTAATTG TAGAAGGGTC AGATAG 

Retrieve as FASTA