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Entry information : WcoCIIBA
Entry ID 8494
Creation 2011-09-14 (Christophe Dunand)
Last sequence changes 2011-09-14 (Christophe Dunand)
Sequence status complete
Reviewer Christophe Dunand
Last annotation changes 2015-06-29 (Christophe Dunand)
Peroxidase information: WcoCIIBA
Name WcoCIIBA
Class Other class II peroxidase type A    [Orthogroup: CIIBA001]
Taxonomy Eukaryota Fungi Basidiomycota Agaricomycetes Coriolaceae Wolfiporia
Organism Wolfiporia cocos    [TaxId: 81056 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value WcoCIIBA
start..stop		 S start..stop
LsulCIIBA01 451 1.01e-160 22..330 36..344
PplCIIBA 407 1.26e-143 23..323 8..306
FpinCIIBA 405 1.5e-142 24..300 42..318
CsuCIIBA 393 1.24e-137 6..330 19..342
Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '8494' 'join(1758239..1758281,1758334..1758362,1758424..1758441,1758496..1758521,1758581..1758685,1758742..1758755,1758810..1758851,1758911..1758989,1759040..1759334,1759392..1759536,1759592..1759758,1759812..1759838)' Exons►
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 1758239..1758281 41 N° 2 1758334..1758362 27 N° 3 1758424..1758441 16 N° 4 1758496..1758521 24
N° 5 1758581..1758685 103 N° 6 1758742..1758755 12 N° 7 1758810..1758851 40 N° 8 1758911..1758989 77
N° 9 1759040..1759334 293 N° 10 1759392..1759536 143 N° 11 1759592..1759758 165 N° 12 1759812..1759838 25
join(1758239..1758281,1758334..1758362,1758424..1758441,1758496..1758521,1758581 ..1758685,1758742..1758755,1758810..1758851,1758911..1758989,1759040..1759334,17 59392..1759536,1759592..1759758,1759812..1759838)


exon

Literature and cross-references WcoCIIBA
DNA ref. JGI genome:   scaffold_3 (1758239..1759838)
Protein sequence: WcoCIIBA
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   330 (313)
PWM (Da):   %s   35365.52 (33558.5)  
PI (pH):   %s   5.81 (5.56) Peptide Signal:   %s   cut: 18 range:18-330
Sequence
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Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MRACYLVLSLLAVFVAGMTQKAPCGRWYTILDEIQANLFNEGRCGNQAREAIRLTFHDGIGRSAALQASGRFGGGGDGSIIKFAHTELANPANDGLEDVVYALKHFADNHNVSYGDIIQFAGAVALSNCPGSPRLAFHFGRPQAIAPSPPNLVPS
PSDSAEQLLARMEDAGFTADDTVALLAAHSLAVQRTIDPSIPGTPLDSTPGEFDAQFYLMLLKGTAYPGKGHSSAEAKSPMKHEFRLASDAAVARHSSTACKWQSFIGDQRGLQASFRDA
MLKLANQGFDDLVDCSDVIPIPRRSNRLLQYPTGKNYSDIEQCPDVPFPGL

Retrieve as FASTA  
Remarks Complete sequence from genomic (11 introns). No EST. 5'end looks different without concerved residues.
alternative prediction MRQGGVAAQAICQSAGRLHRLASRKLMCDEGLLSCIEPPCCI which need to be confirmed.
DNA ►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGAGGGCTTGTTATCTTGTATTGAGCCTCCTTGCTGTATTCGCGGTATGTTTCATGAGCGCTATTCATGATGATATAGCTATGCTGAACGCCTCAGTTGCTGGCATGACCCAGAAAGCG
CCCGAGAGGCAGGTCATTGACCACCTGTAGCGGATTCAATTGTTCCAGAACCTGCTAACCTTCCTATAGTGTGGCAGGTGGTATACTCTGTAAGCATATTTCTAACCTATCTGTGATGAA
TCTGCAATCCCATCTGCAATCAGATCCTTGATGAGATACAAGCAAATTTTTGTAGGTTCATTGGACCGTACATGTGTCTGATGCCCTCATCGCTCCCCGTCGTGCAACAGGTTCAACGAA
GGACGTTGTGGAAACCAAGCTCGAGAAGCCATCCGCTTGACATTCCATGATGGGATCGGTCGCTCGGCGGCGTTGCAGGCTTCAGGAAGATTTGGGGGTGAGTATGCTAGTGTCGGTTGA
ATCTTGGTGGCTGATGAGCAATTCATTGAAAAGAGGAGGGGGCGCAGAGGTAAAGCTTCAATAGTTGCCTAATTATAATACAATAAATCATCGTGCTGTTCAGATGGCAGCATCATCAAA
TTTGCCCACACGGAGTTGGCCAACCCCGTTAGGTCCCTTCTCTGCACGGTTGCACTCTGATTGTAATTATGCTGATTACCCGATAGCGGCAAATGACGGCCTGGAGGATGTAGTATACGC
TCTCAAGCACTTTGCCGATAACCACAACGTCAGCTACGGTGACATATGTGCGTCCCACTGGCGTGTCTATAATGCGTAGATGCTGATGTTGTCGCAGAATTCAATTCGCCGGAGCAGTCG
CCCTCTCAAATTGTCCTGGAAGTCCTCGTCTTGCATTCCATTTCGGGCGTCCTCAGGCAATCGCCCCATCTCCTCCGAACCTTGTTCCCTCTCCTTCGGACTCCGCTGAGCAGCTCCTCG
CACGCATGGAAGACGCAGGCTTCACGGCGGACGATACTGTCGCGCTTCTGGCCGCTCATTCACTTGCGGTGCAAAGAACAATCGATCCAAGCATCCCTGGCACCCCCCTCGATTCTACTC
CGGGAGAGTTTGACGCGCAGTTCTATTTGGAGAGGTGTGATGCACAGCCAGAGTGACCACTGGTTTACCTTTAGCTGAGTTGCGTCTGCAGATGCTGCTGAAAGGCACCGCCTATCCTGG
GAAAGGGCATAGCTCAGCGGAGGCGAAGTCCCCAATGAAGCACGAGTTCCGGCTTGCCTCGGATGCTGCAGTGGCCCGTCATAGCAGTACTGCGTGCAAGTGGCAGTCCTTCATTGTGGT
AAGTCCGAAGTGCTCCCGGCAAGAAGAACATACTCATGACTTTATCTGAGCAGGCGATCAAAGAGGCCTGCAAGCATCATTCCGTGACGCTATGCTGAAGCTCGCTAATCAGGGCTTCGA
CGACCTCGTCGATTGCTCAGATGTCATCCCCATCCCAAGGCGCTCAAACCGTCTCTTACAGTATCCGACAGGCAAGAACTACTCCGATATTGAACAGTTTTTGTAAGTTGGCAGCAAAAG
GATGTCATGCAAAGTCGTACTTACGAGATGAACAGTGTCCTGATGTCCCCTTTCCTGGGCTA

Retrieve as FASTA  
CDS►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGAGGGCTTGTTATCTTGTATTGAGCCTCCTTGCTGTATTCGTTGCTGGCATGACCCAGAAAGCGCCCGAGTGTGGCAGGTGGTATACTATCCTTGATGAGATACAAGCAAATTTGTTC
AACGAAGGACGTTGTGGAAACCAAGCTCGAGAAGCCATCCGCTTGACATTCCATGATGGGATCGGTCGCTCGGCGGCGTTGCAGGCTTCAGGAAGATTTGGAGGAGGGGGCGCAGATGGC
AGCATCATCAAATTTGCCCACACGGAGTTGGCCAACCCGGCAAATGACGGCCTGGAGGATGTAGTATACGCTCTCAAGCACTTTGCCGATAACCACAACGTCAGCTACGGTGACATAATT
CAATTCGCCGGAGCAGTCGCCCTCTCAAATTGTCCTGGAAGTCCTCGTCTTGCATTCCATTTCGGGCGTCCTCAGGCAATCGCCCCATCTCCTCCGAACCTTGTTCCCTCTCCTTCGGAC
TCCGCTGAGCAGCTCCTCGCACGCATGGAAGACGCAGGCTTCACGGCGGACGATACTGTCGCGCTTCTGGCCGCTCATTCACTTGCGGTGCAAAGAACAATCGATCCAAGCATCCCTGGC
ACCCCCCTCGATTCTACTCCGGGAGAGTTTGACGCGCAGTTCTATTTGGAGATGCTGCTGAAAGGCACCGCCTATCCTGGGAAAGGGCATAGCTCAGCGGAGGCGAAGTCCCCAATGAAG
CACGAGTTCCGGCTTGCCTCGGATGCTGCAGTGGCCCGTCATAGCAGTACTGCGTGCAAGTGGCAGTCCTTCATTGGCGATCAAAGAGGCCTGCAAGCATCATTCCGTGACGCTATGCTG
AAGCTCGCTAATCAGGGCTTCGACGACCTCGTCGATTGCTCAGATGTCATCCCCATCCCAAGGCGCTCAAACCGTCTCTTACAGTATCCGACAGGCAAGAACTACTCCGATATTGAACAG
TTTTGTCCTGATGTCCCCTTTCCTGGGCTA

Retrieve as FASTA