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Entry information : ShirCIIBC03
Entry ID 8501
Creation 2011-09-20 (Christophe Dunand)
Last sequence changes 2011-09-20 (Christophe Dunand)
Sequence status complete
Reviewer Nizar Fawal
Last annotation changes 2012-10-30 (Nizar Fawal)
Peroxidase information: ShirCIIBC03
Name ShirCIIBC03
Class Other class II peroxidase type C    [Orthogroup: CIIBC001]
Taxonomy Eukaryota Fungi Basidiomycota Agaricomycetes Stereaceae Stereum
Organism Stereum hirsutum    [TaxId: 40492 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value ShirCIIBC03
start..stop		 S start..stop
ShirCIIBC04 597 0 1..357 1..358
ShirCIIBC02 575 0 1..357 1..360
ShirCIIBC06 565 0 1..357 1..352
ShirCIIBC05 553 0 1..354 1..350
Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '8501' 'complement(join(551692..551704,551762..551826,551887..551964,552041..552165,552221..552300,552360..552425,552486..552621,552679..552879,552940..553057,553121..553185,553238..553364))' Exons►
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 553238..553364 125 N° 2 553121..553185 63 N° 3 552940..553057 116 N° 4 552679..552879 199
N° 5 552486..552621 134 N° 6 552360..552425 64 N° 7 552221..552300 78 N° 8 552041..552165 123
N° 9 551887..551964 76 N° 10 551762..551826 63 N° 11 551692..551704 11  
complement(join(551692..551704,551762..551826,551887..551964,552041..552165,5522 21..552300,552360..552425,552486..552621,552679..552879,552940..553057,553121..5 53185,553238..553364))


exon

Literature and cross-references ShirCIIBC03
DNA ref. JGI genome:   scaffold_17 (553364..551692)
Cluster/Prediction ref. JGI gene:   6216
Protein sequence: ShirCIIBC03
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   357 (335)
PWM (Da):   %s   37557.66 (35336.5)  
PI (pH):   %s   4.22 (4.22) Peptide Signal:   %s   cut: 23 range:23-357
Sequence
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Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MAFAQLSTLIALVFGAAQFVAAAPPRKIRCADGNVTSNAVCCQLFPVVANLQENLFDGAQCGEAHSALRLSFHDAIGFSIHGGKGGGADGSILAFNDTELQFHANGGIDDIVAGQFPVFQTTNLSPGDFVHLAAAVGTANCPGAPQLEFFFGRPPPKAPAPD
LTVPEPTDSVDAIIERFADAGFAPDEIVALLSSHTVAAADVVDVTIPGTPFDSTPFTFDTQIFVETLLVGTLFPGNGSQSGEVLSPIPGEMRLQSDFELADPRTACLWQAMINDQTRMQT
QFKAAMAKLEVLGQRNLVDCSVVPVPPPFRGQAMFPATFSRRDIQQACQATPFPTLETIPGPETSVPPVPGS

Retrieve as FASTA  
Remarks Complete sequence from genomic (10 introns).
DNA ►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCTTTCGCTCAACTCTCAACTCTCATCGCTCTTGTCTTCGGCGCCGCCCAGTTCGTCGCGGCTGCTCCACCCAGGAAGATTAGGTGTGCTGACGGAAACGTCACATCCAACGCTGTC
TGTTGTCGTGAGTCGGCTTCATTCTATCCCCACCAACTATTCTGATGTTGTCGCAACAGAGAGTTGTTCCCCGTCGTTGCAAACCTACAAGAGAACTTGTTCGACGGTGCTCAATGTGGT
GAAGAGGTAATGCCATATTCCCTGGGCTTATCGAGAAATCTTCATGCTGACTATCGTTCTCGTTGGCAGGCGCGCACTCTGCTCTCCGCCTCTCCTTCCACGATGCCATCGGGTTCTCGA
TCCACGGCGGCAAGGGTGGAGGTGCTGATGGTTCCATCTTAGCTTTCAACGACACCGAGCTGCAATTCCGTAGGTTATCGAATATCGCACATCTTTCTTCAGTTTGAGCTCACGTAACGG
TCTTTACAGACACGCCAACGGTGGTATTGACGACATCGTCGCCGGCCAGTTCCCGGTGTTCCAGACAACCAACCTCTCCCCAGGTGACTTCGTCCACCTCGCTGCCGCGGTCGGTACTGC
GAACTGCCCTGGTGCTCCTCAGCTCGAATTCTTCTTCGGGCGCCCTCCCCCCAAGGCACCCGCTCCCGATCTCACTGTCCCCGAACCCACCGGTATGTTTCTGTAGTCTCGTTGTTTCTG
TATTTTATTCTTACAGTATGATTTTCTAGACACTCCGTCGACGCTATCATTGAGAGGTTCGCAGATGCTGGCTTCGCCCCAGACGAGATTGTCGCTCTTCTGTCGTCTCACACTGTTGCT
GCTGCCGATGTCGTTGATGTGACAATCCCTGGAACTCCCTTCGACTCGTGAGTACTGGTGGCGCATGCTGATGTATTGCATGTTACTGACCAGAACACTACCTCTAGGAGACACCCTTCA
CCTTCGACACACAGATCTTCGTTGAGACCTTGTTGGTTGGTACGCTGTTCCCAGGGTAAGCCTTCATCTCTCGCCTATAACTTTGATTTTGTGCTCATATTTTATGCCATCCAGAAAAAC
GGCTCCCAGTCCGGTGAAGTATTGTCCCCCATTCCCGGAGAGATGCGTCTTCAGAGTGACTTCGAACTCGCCCGTGGTATGTCCTTACTCCAATTGTACCGCCATGTTGACAATATTAAT
GATGACCTCAGACACCCAAGGACCGCCTGTCTTTGGCAGGCCATGATCAACGACCAGACTCGCATGCAGACGCAATTCAAGGCCGCCATGGCCAAGCTCGAAGTCCTCGGCCAGAGAAAC
CTTGTAGACTGCTCTGATGTACGTTCATCCTGTTGCTTTAAGTCTTGGACCGGGCCGGCTTCTAACTATTACCCACATCTCGCTCCATACATAGGTGTCGTCCCCGTTCCCCCTCCCTTC
AGAGGCCAGGCCATGTTCCCCGCCACGTTCTCCCGCAGGGATATTCAGCAGGCTGTACGCCTCATAGTTTCATCCGAATGCTCTTATTCGTACTCACCTATCCTTCCCAAATAGTGTGCC
AGGCGACTCCCTTCCCCACCCTTGAGACCATCCCGGGTCCCGAGACCTCCGTACCCCCCGTGTAAGCACCTATCCCATACAATTCTGCCGTTATGTGCTGATGATTTTTGGTTTTCAGTC

TCCCGGCTCTTAA

Retrieve as FASTA  
CDS►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCTTTCGCTCAACTCTCAACTCTCATCGCTCTTGTCTTCGGCGCCGCCCAGTTCGTCGCGGCTGCTCCACCCAGGAAGATTAGGTGTGCTGACGGAAACGTCACATCCAACGCTGTC
TGTTGTCAGTTGTTCCCCGTCGTTGCAAACCTACAAGAGAACTTGTTCGACGGTGCTCAATGTGGTGAAGAGGCGCACTCTGCTCTCCGCCTCTCCTTCCACGATGCCATCGGGTTCTCG
ATCCACGGCGGCAAGGGTGGAGGTGCTGATGGTTCCATCTTAGCTTTCAACGACACCGAGCTGCAATTCCACGCCAACGGTGGTATTGACGACATCGTCGCCGGCCAGTTCCCGGTGTTC
CAGACAACCAACCTCTCCCCAGGTGACTTCGTCCACCTCGCTGCCGCGGTCGGTACTGCGAACTGCCCTGGTGCTCCTCAGCTCGAATTCTTCTTCGGGCGCCCTCCCCCCAAGGCACCC
GCTCCCGATCTCACTGTCCCCGAACCCACCGACTCCGTCGACGCTATCATTGAGAGGTTCGCAGATGCTGGCTTCGCCCCAGACGAGATTGTCGCTCTTCTGTCGTCTCACACTGTTGCT
GCTGCCGATGTCGTTGATGTGACAATCCCTGGAACTCCCTTCGACTCGACACCCTTCACCTTCGACACACAGATCTTCGTTGAGACCTTGTTGGTTGGTACGCTGTTCCCAGGAAACGGC
TCCCAGTCCGGTGAAGTATTGTCCCCCATTCCCGGAGAGATGCGTCTTCAGAGTGACTTCGAACTCGCCCGTGACCCAAGGACCGCCTGTCTTTGGCAGGCCATGATCAACGACCAGACT
CGCATGCAGACGCAATTCAAGGCCGCCATGGCCAAGCTCGAAGTCCTCGGCCAGAGAAACCTTGTAGACTGCTCTGATGTCGTCCCCGTTCCCCCTCCCTTCAGAGGCCAGGCCATGTTC
CCCGCCACGTTCTCCCGCAGGGATATTCAGCAGGCTTGCCAGGCGACTCCCTTCCCCACCCTTGAGACCATCCCGGGTCCCGAGACCTCCGTACCCCCCGTTCCCGGCTCTTAA

Retrieve as FASTA