View Redoxidase 853

Entry information : SbPrx69 (Sobic.003G437400.1 [2.1] / Sb03g046810 [1.4])

Entry ID	853
Creation	2007-09-11 (Christophe Dunand)
Last sequence changes	2011-01-24 (Toky Ramarohetra)
Sequence status	complete
Reviewer	Messaoudi
Last annotation changes	2014-08-04 (Messaoudi)

Peroxidase information: SbPrx69 (Sobic.003G437400.1 [2.1] / Sb03g046810 [1.4])

Name (synonym)

SbPrx69 (Sobic.003G437400.1 [2.1] / Sb03g046810 [1.4])

Class

Class III peroxidase [Orthogroup: Prx005]

Taxonomy

Eukaryota Viridiplantae Streptophyta Monocotyledons Poaceae Sorghum

Organism

Sorghum bicolor [TaxId: 4558 ]

Cellular localisation

N/D

Tissue types

Callus
Cell culture

Inducer

N/D

Repressor

N/D

Best BLASTp hits

Perox	score	E-value	SbPrx69 start..stop	S start..stop
ZmPrx139	602	0	20..359	22..355
SiPrx07	571	0	30..359	30..354
PviPrx03	565	0	35..355	30..350
TaPrx77-1D	536	0	33..361	32..362

Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '853' 'join(73840891..73841346,73841464..73842096)'

Exons►

Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size
N° 1	73840891..73841346	454	N° 2	73841464..73842096	631
join(73840891..73841346,73841464..73842096)

Literature and cross-references SbPrx69 (Sobic.003G437400.1 [2.1] / Sb03g046810 [1.4])

Literature	Cordonnier-Pratt,M.-M. et al., unpublished
Protein ref.	UniProtKB: P84516
DNA ref.	Phytozome 12: chromosome_3 (73840891..73842096)
EST ref.	GenBank: CD226287 [5' end] CD223442 [3' end]
Cluster/Prediction ref.	UniGene: Sbi.16937

Protein sequence: SbPrx69 (Sobic.003G437400.1 [2.1] / Sb03g046810 [1.4])

Sequence Properties
first value : protein
second value (mature protein)

Length (aa):	362 (335)
PWM (Da):	38280.55 (35795.3)
PI (pH):	8.15 (8.00)	Peptide Signal:	cut: 28 range:28-362

Sequence
Send to BLAST
Send to Peroxiscan

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

MSRAPTLAAAAAVAAVVLICSSSTATAADGNARQPPLAPGLSFDF
YKRSCPKAESIVRSFVQDAVRRDVGLAAGLLRLHFHDCFVQGCDASVLLDGSATGPGEQQAPPNLTLRPTAFKAI
NDIHDRLHKECGGTVVSCSDVLALAARDSVVVSGGPSYKVPLGRRDSASFATQQDVLSGLPPPTAAVPALLAVLSKINLDATDLVALSGGHTIGLGHCTSFEDRLFPRPDPTLNATFAGQ
LRRTCPAKGTDRRTPLDVRTPNAFDNKYYVNLVNREGLFTSDQDLFSNARTRALVDKFARSQRDFFDQFAFSVVKMGQIKVLTGTQGQIRTNCSARNAAGTTMLPWSVSVVEEAADESLG
VF*

Retrieve as FASTA

Remarks

Complete sequence from genomic (chromo 3, intron 2) and 40 ESTs. No overlap between 5' and 3' ends but ESTs compiled in the same Unigene!!

DNA ►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

ATGTCTCGTGCTCCTACGCTCGCTGCCGCTGCCGCGGTGGCGGCCGTCGTCCTCATCTGCTCCTCCTCAACGGCTACCGCGGCGGACGGCAACGCGAGGCAGCCGCCGCTGGCCCCGGGC
CTGTCCTTCGACTTCTACAAGCGCAGCTGCCCTAAGGCGGAGTCCATCGTGCGGAGCTTCGTGCAGGACGCCGTGCGCAGGGACGTCGGCCTCGCCGCCGGCCTCCTCCGCCTCCACTTC
CACGACTGCTTCGTGCAGGGCTGCGACGCCTCCGTGCTCCTCGACGGCTCCGCCACCGGGCCGGGAGAGCAGCAGGCGCCGCCCAACCTCACGCTGCGCCCCACCGCGTTCAAGGCCATC
AACGACATCCACGACCGCCTCCACAAGGAGTGCGGCGGCACCGTCGTCTCCTGCTCCGACGTCCTCGCGCTCGCCGCACGGGACTCCGTCGTCGTGTGGTACATACCATACGCATGCATG
CACAATTTTCTTCTTTTCGTTTCTTTTCTTTAACCTGTTGTTTGCTGCTCGCTCACACACCACCACATGCATGCCTCGATCCATTCCATATGCAGTCCGGCGGGCCGAGCTACAAGGTGC
CCCTGGGTCGTCGCGACAGCGCGAGCTTTGCGACGCAGCAGGACGTCCTGAGCGGGCTCCCGCCGCCGACGGCCGCGGTGCCGGCGCTCCTCGCCGTGCTGTCCAAGATCAACCTGGACG
CGACGGACCTGGTGGCGCTGTCAGGCGGGCACACCATCGGGCTGGGCCACTGCACGTCGTTCGAGGACCGCCTGTTCCCGCGCCCGGACCCGACGCTGAACGCCACCTTCGCCGGCCAGC
TCCGGCGGACATGCCCGGCGAAGGGCACCGACCGCCGGACGCCGCTGGACGTGCGCACGCCCAACGCGTTCGACAACAAGTACTACGTGAACCTGGTGAACCGTGAGGGGCTCTTCACCT
CGGACCAGGACCTCTTCAGCAACGCCCGCACCAGGGCCCTCGTCGACAAGTTCGCGCGCAGCCAGAGGGACTTCTTCGACCAGTTCGCCTTCTCCGTGGTGAAGATGGGGCAGATCAAGG
TGCTGACGGGCACGCAGGGGCAGATCCGCACCAACTGCTCCGCACGCAACGCCGCCGGGACGACGATGCTGCCGTGGTCCGTCTCCGTCGTCGAGGAGGCTGCAGATGAGAGCCTCGGCG
TGTTCTAG

Retrieve as FASTA

CDS►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

ATGTCTCGTGCTCCTACGCTCGCTGCCGCTGCCGCGGTGGCGGCCGTCGTCCTCATCTGCTCCTCCTCAACGGCTACCGCGGCGGACGGCAACGCGAGGCAGCCGCCGCTGGCCCCGGGC
CTGTCCTTCGACTTCTACAAGCGCAGCTGCCCTAAGGCGGAGTCCATCGTGCGGAGCTTCGTGCAGGACGCCGTGCGCAGGGACGTCGGCCTCGCCGCCGGCCTCCTCCGCCTCCACTTC
CACGACTGCTTCGTGCAGGGCTGCGACGCCTCCGTGCTCCTCGACGGCTCCGCCACCGGGCCGGGAGAGCAGCAGGCGCCGCCCAACCTCACGCTGCGCCCCACCGCGTTCAAGGCCATC
AACGACATCCACGACCGCCTCCACAAGGAGTGCGGCGGCACCGTCGTCTCCTGCTCCGACGTCCTCGCGCTCGCCGCACGGGACTCCGTCGTCGTGTCCGGCGGGCCGAGCTACAAGGTG
CCCCTGGGTCGTCGCGACAGCGCGAGCTTTGCGACGCAGCAGGACGTCCTGAGCGGGCTCCCGCCGCCGACGGCCGCGGTGCCGGCGCTCCTCGCCGTGCTGTCCAAGATCAACCTGGAC
GCGACGGACCTGGTGGCGCTGTCAGGCGGGCACACCATCGGGCTGGGCCACTGCACGTCGTTCGAGGACCGCCTGTTCCCGCGCCCGGACCCGACGCTGAACGCCACCTTCGCCGGCCAG
CTCCGGCGGACATGCCCGGCGAAGGGCACCGACCGCCGGACGCCGCTGGACGTGCGCACGCCCAACGCGTTCGACAACAAGTACTACGTGAACCTGGTGAACCGTGAGGGGCTCTTCACC
TCGGACCAGGACCTCTTCAGCAACGCCCGCACCAGGGCCCTCGTCGACAAGTTCGCGCGCAGCCAGAGGGACTTCTTCGACCAGTTCGCCTTCTCCGTGGTGAAGATGGGGCAGATCAAG
GTGCTGACGGGCACGCAGGGGCAGATCCGCACCAACTGCTCCGCACGCAACGCCGCCGGGACGACGATGCTGCCGTGGTCCGTCTCCGTCGTCGAGGAGGCTGCAGATGAGAGCCTCGGC
GTGTTCTAG

Retrieve as FASTA