Entry information : RcoAPx01 (RcApx1)
Entry ID 8546
Creation 2011-02-24 (Christophe Dunand)
Last sequence changes 2015-11-09 (Christophe Dunand)
Sequence status partial
Reviewer Achraf Jemmat
Last annotation changes 2015-11-09 (Achraf Jemmat)
Peroxidase information: RcoAPx01 (RcApx1)
Name (synonym) RcoAPx01 (RcApx1)
Class Ascorbate peroxidase     [Orthogroup: APx001]*
Taxonomy Eukaryota Viridiplantae Streptophyta Rubiaceae Rubia
Organism Rubia cordifolia    [TaxId: 339321 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value RcoAPx01
start..stop
S start..stop
LeAPx03 262 1.62e-90 1..145 68..212
VvAPx01 261 2.54e-90 1..145 68..212
VhAPx01 261 2.54e-90 1..145 68..212
StAPx01 261 2.54e-90 1..145 68..212
Literature and cross-references RcoAPx01 (RcApx1)
Literature Shkryl,Y.N., Veremeichik,G.N., Bulgakov,V.P., Gorpenchenko,T.Y., Aminin,D.L. and Zhuravlev,Y.N. Decreased ROS level and activation of antioxidant gene expression in Agrobacterium rhizogenes pRiA4-transformed calli of Rubia cordifolia. Planta 232 (5), 1023-1032 (2010)
mRNA ref. GenBank:   GQ380494.1
Protein sequence: RcoAPx01 (RcApx1)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   146
PWM (Da):   %s   15907.14  
PI (pH):   %s   5.86
Sequence
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Send to Peroxiscan
*.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
HGANNGIHIA LSLLESTKQE FPILSHADFY QLAGVVAVEV TGGPDVPFHP GREDKVEPPV EGRLPDATKG CDHLRQVFVK QMGLTDKDIV VLSGAHTLGR CHKERSGFEG PWTSNPLYFD 
NSYFKELLSE DKEGLLKLPA DKALLD 

Retrieve as FASTA  
Remarks
CDS
Send to BLAST
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
CATGGAGCTA ACAACGGTAT TCACATTGCA CTTAGCCTCT TGGAGTCCAC CAAGCAGGAG TTCCCCATCC TTTCACACGC TGACTTCTAC CAGTTGGCTG GAGTTGTAGC TGTTGAAGTT  ACTGGTGGAC CTGATGTTCC ATTCCATCCA GGAAGAGAGG ATAAGGTTGA GCCTCCAGTT GAAGGCCGTC TTCCTGATGC CACTAAGGGT TGTGACCACC TGAGGCAAGT ATTTGTCAAG  CAGATGGGTC TAACTGATAA GGATATCGTC GTTCTATCTG GTGCACACAC CCTGGGAAGA TGCCACAAGG AACGATCTGG ATTTGAAGGT CCCTGGACTT CAAACCCCCT CTACTTTGAT 
AATTCATACT TCAAGGAGCT TTTGAGTGAG GACAAGGAAG GGCTTCTGAA GCTTCCTGCA GACAAGGCTC TTCTGGATGA TGC 

Retrieve as FASTA