Entry information : RcoPrx02 (RcPOX8 / RcPrx8)
Entry ID 8549
Creation 2011-02-24 (Christophe Dunand)
Last sequence changes 2011-07-11 (Qiang Li)
Sequence status partial
Reviewer Achraf Jemmat
Last annotation changes 2015-11-09 (Achraf Jemmat)
Peroxidase information: RcoPrx02 (RcPOX8 / RcPrx8)
Name (synonym) RcoPrx02 (RcPOX8 / RcPrx8)
Class Class III peroxidase    [Orthogroup: N/D] N/D
Taxonomy Eukaryota Viridiplantae Streptophyta Rubiaceae Rubia
Organism Rubia cordifolia    [TaxId: 339321 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value RcoPrx02
start..stop
S start..stop
InPrx14 85 5.72e-22 1..57 85..141
IaquPrx85 84 8.93e-22 1..57 80..136
MguPrx[P]104 80 3.45e-20 1..57 77..136
AtrPrx20 79 4.94e-20 1..57 67..127
Literature and cross-references RcoPrx02 (RcPOX8 / RcPrx8)
Literature Veremeichik,G.N., Shkryl,Y.N., Bulgakov,V.P., Avramenko,T.V. and Zhuravlev,Y.N. Molecular cloning and characterization of seven class III peroxidases induced by overexpression of the agrobacterial rolB gene in Rubia cordifolia transgenic callus cultures. Plant Cell Rep. 31 (6), 1009-1019 (2012)
mRNA ref. GenBank:   HM807275.1
Protein sequence: RcoPrx02 (RcPOX8 / RcPrx8)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   61
PWM (Da):   %s   6482.22  
PI (pH):   %s   7.18
Sequence
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Send to Peroxiscan
*.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2

GCDASILYDS NNGEMGSSKN FGIRKREVIG VIKEMVELAC PMKVSCADIL ILAARTSHGW N 

Retrieve as FASTA  
Remarks Partial sequence from genomic. Incorrect prediction from phtozome (Just exon 2).
CDS
Send to BLAST
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
GGTTGTGATG CTTCCATCCT CTATGATTCG AACAACGGTG AAATGGGATC GAGTAAGAAT TTTGGGATAA GGAAGAGGGA GGTGATAGGT GTGATAAAAG AGATGGTGGA ATTGGCATGT 
CCTATGAAGG TTTCATGTGC TGATATACTT ATATTGGCTG CTCGGACCTC ACACGGTTGG AAT 

Retrieve as FASTA  
cDNA
Send to BLAST
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
GGTTGTGATG CTTCCATCCT CTATGATTCG AACAACGGTG AAATGGGATC GAGTAAGAAT TTTGGGATAA GGAAGAGGGA GGTGATAGGT GTGATAAAAG AGATGGTGGA ATTGGCATGT 
CCTATGAAGG TTTCATGTGC TGATATACTT ATATTGGCTG CTCGGACCTC ACACGGTTGG AAT 

Retrieve as FASTA