Entry information : RcoPrx07 (RcPOX3 / RcPrx3)
Entry ID 8552
Creation 2011-02-24 (Christophe Dunand)
Last sequence changes 2015-11-09 (Christophe Dunand)
Sequence status complete
Reviewer Achraf Jemmat
Last annotation changes 2015-11-09 (Achraf Jemmat)
Peroxidase information: RcoPrx07 (RcPOX3 / RcPrx3)
Name (synonym) RcoPrx07 (RcPOX3 / RcPrx3)
Class Class III peroxidase    [Orthogroup: Prx001]
Taxonomy Eukaryota Viridiplantae Streptophyta Rubiaceae Rubia
Organism Rubia cordifolia    [TaxId: 339321 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value RcoPrx07
start..stop
S start..stop
NnPrx50 552 0 1..330 1..331
RcPrx17 546 0 1..330 1..331
CclPrx35 545 0 1..329 1..330
CsPrx10 545 0 1..329 1..330
Literature and cross-references RcoPrx07 (RcPOX3 / RcPrx3)
Literature Veremeichik,G.N., Shkryl,Y.N., Bulgakov,V.P., Avramenko,T.V. and Zhuravlev,Y.N. Molecular cloning and characterization of seven class III peroxidases induced by overexpression of the agrobacterial rolB gene in Rubia cordifolia transgenic callus cultures. Plant Cell Rep. 31 (6), 1009-1019 (2012)
mRNA ref. GenBank:   HM807270.1
Protein sequence: RcoPrx07 (RcPOX3 / RcPrx3)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   331 (309)
PWM (Da):   %s   35950.3 (33619.1)  
PI (pH):   %s   9.32 (9.59) Peptide Signal:   %s   cut: 23 range:23-331
Sequence
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Send to Peroxiscan
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
MPHSMSLFVV ASLLAFAPLC LCAKSSGGYL YPQFYDRSCP KATEIVRSIV AKAVAEEARM AASLIRLHFH DCFVKGCDAS ILLDGSRKIT TEKRSNPNRN SARGFEVIDE IKSALEKECP  HTVSCADILA LSAGDSTVLA GGSSWEVPLG RRDSRGASLS GSNNNIPAPN NTFQTILTKF KVQGLDLVDL VALSGSHTIG DARCTSFRQR LYNQNGNGKP DFSLEQNYAG KLRQNCPRSG 
GDQNLFVMDF VSPAKFDNSY FKLLLASKGL LNSDQVLVTK SAAALPLVKQ YAANNQLFFQ CFLNMIKMSN ISPLTGNKGE VRRICRRVNS Q 

Retrieve as FASTA  
Remarks Complete sequence.
CDS
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.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
ATGCCCCACT CCATGAGCCT TTTCGTCGTC GCATCTCTGC TCGCTTTCGC TCCCCTTTGC TTGTGTGCCA AGTCCAGTGG AGGGTACCTT TACCCTCAGT TCTACGACAG ATCCTGTCCC  AAAGCGACGG AAATCGTGCG CTCCATAGTT GCCAAGGCGG TCGCGGAAGA GGCGCGCATG GCGGCTTCAC TGATCAGGCT GCATTTCCAT GACTGTTTTG TCAAGGGCTG CGATGCATCG  ATACTCCTGG ACGGAAGCAG GAAGATCACG ACTGAGAAGA GGTCGAATCC CAACAGAAAC TCAGCGCGCG GATTTGAAGT TATCGATGAG ATCAAATCAG CATTGGAGAA GGAATGCCCT  CACACTGTCT CCTGTGCTGA TATCCTGGCT CTTTCTGCTG GCGACTCAAC CGTTTTGGCT GGAGGATCCA GCTGGGAGGT TCCACTGGGA AGAAGAGACT CCAGAGGAGC CAGTTTGAGT  GGCTCCAACA ACAACATTCC TGCCCCGAAC AACACTTTTC AGACAATCCT CACTAAGTTC AAAGTTCAAG GCCTTGACCT TGTTGATCTT GTAGCATTAT CCGGAAGCCA CACCATAGGA  GATGCGCGAT GCACCAGCTT CAGGCAAAGG CTGTACAACC AAAACGGAAA TGGGAAACCA GACTTCTCGT TGGAGCAAAA CTACGCGGGT AAACTGCGCC AGAACTGTCC ACGATCCGGT  GGTGATCAGA ACCTGTTTGT CATGGACTTC GTCTCCCCAG CAAAGTTCGA TAACAGCTAC TTCAAGCTCC TGTTGGCTTC AAAGGGCCTG TTGAATTCTG ATCAGGTTCT TGTAACCAAG  AGTGCTGCTG CGCTGCCTCT CGTGAAACAA TACGCCGCCA ACAATCAGCT CTTCTTCCAG TGCTTCCTAA ACATGATCAA GATGTCCAAC ATTTCACCAT TGACGGGAAA CAAGGGAGAG 
GTCCGCAGGA TCTGCAGGAG GGTAAACTCT CAGTAG 

Retrieve as FASTA  
cDNA
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.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
CAACAAGTTC CATCCCATTT CATCAAACAA AATGCCCCAC TCCATGAGCC TTTTCGTCGT CGCATCTCTG CTCGCTTTCG CTCCCCTTTG CTTGTGTGCC AAGTCCAGTG GAGGGTACCT  TTACCCTCAG TTCTACGACA GATCCTGTCC CAAAGCGACG GAAATCGTGC GCTCCATAGT TGCCAAGGCG GTCGCGGAAG AGGCGCGCAT GGCGGCTTCA CTGATCAGGC TGCATTTCCA  TGACTGTTTT GTCAAGGGCT GCGATGCATC GATACTCCTG GACGGAAGCA GGAAGATCAC GACTGAGAAG AGGTCGAATC CCAACAGAAA CTCAGCGCGC GGATTTGAAG TTATCGATGA  GATCAAATCA GCATTGGAGA AGGAATGCCC TCACACTGTC TCCTGTGCTG ATATCCTGGC TCTTTCTGCT GGCGACTCAA CCGTTTTGGC TGGAGGATCC AGCTGGGAGG TTCCACTGGG  AAGAAGAGAC TCCAGAGGAG CCAGTTTGAG TGGCTCCAAC AACAACATTC CTGCCCCGAA CAACACTTTT CAGACAATCC TCACTAAGTT CAAAGTTCAA GGCCTTGACC TTGTTGATCT  TGTAGCATTA TCCGGAAGCC ACACCATAGG AGATGCGCGA TGCACCAGCT TCAGGCAAAG GCTGTACAAC CAAAACGGAA ATGGGAAACC AGACTTCTCG TTGGAGCAAA ACTACGCGGG  TAAACTGCGC CAGAACTGTC CACGATCCGG TGGTGATCAG AACCTGTTTG TCATGGACTT CGTCTCCCCA GCAAAGTTCG ATAACAGCTA CTTCAAGCTC CTGTTGGCTT CAAAGGGCCT  GTTGAATTCT GATCAGGTTC TTGTAACCAA GAGTGCTGCT GCGCTGCCTC TCGTGAAACA ATACGCCGCC AACAATCAGC TCTTCTTCCA GTGCTTCCTA AACATGATCA AGATGTCCAA  CATTTCACCA TTGACGGGAA ACAAGGGAGA GGTCCGCAGG ATCTGCAGGA GGGTAAACTC TCAGTAGAGT CTACTGTTTC ATAATCCCAC GACATTGGAT TTCTTGTTCT TTTCTCTGCG  TCAATACGAG TGTTATTTAT TTCAGCTTTA GTATTGTATC CTATCCATTT TCATGGAAAC TTTGGTGTTA AGTTAGTATT GATTCAATGC AACTGCAATT CTTTTGTCAA AAAAAAAAAA 
AAAAAAAAAA AA 

Retrieve as FASTA