Entry information : CclPrx58(clementine0.9_018254m)
Entry ID 8649
Creation 2011-06-25 (Qiang Li)
Last sequence changes 2012-01-03 (Christophe Dunand)
Sequence status complete
Reviewer Not yet reviewed
Last annotation changes 2022-08-31 (Christophe Dunand)
Peroxidase information: CclPrx58(clementine0.9_018254m)
Name CclPrx58(clementine0.9_018254m)
Class Class III peroxidase    [Orthogroup: Prx034]
Taxonomy Eukaryota Viridiplantae Streptophyta Rutaceae Citrus
Organism Citrus clementina    [TaxId: 85681 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value CclPrx58
start..stop
S start..stop
CsPrx03 437 8e-157 10..248 1..241
NtPrx96-1A 401 2e-141 4..322 3..329
NtPrx96-1B 396 2e-139 28..322 35..329
GbPrx53 370 5e-129 24..322 33..331
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 1386198..1386416 219 N° 2 1385919..1386107 189 N° 3 1385710..1385820 111 N° 4 1385004..1385399 396
complement(join(1385004..1385399,1385710..1385820,1385919..1386107,1386198..1386 416))


exon

Literature and cross-references CclPrx58(clementine0.9_018254m)
DNA ref. Phytozome 12:   scaffold_33 (1386416..1385004)
EST ref. GenBank:   FC920886.1 [5' end]
Protein sequence: CclPrx58(clementine0.9_018254m)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   322 (303)
PWM (Da):   %s   35339.73 (33735.1) Transmb domain:   %s   i11-33o
PI (pH):   %s   6.04 (9.11) Peptide Signal:   %s   cut: 25 range:25-327
Sequence 363
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MKMGLRELTMVLILWGSCCLFAGGNGVLVLHFYKKSCPSAEMPVKEEMKRNMLSDISSAAAILRLDFHDCQVQGCDGSILLGNSNGITTETLSDKNFGIRKVDIINEIKSSLETICPETVSCADFIQLAARDAVLVSGGPYIEVLTGRRDAVSGKKERADNQLPTYDISVSEFxxVFLQKNISLEDGVALMGSHTLGVSHCRNFQNRLWPIKDDTLSLAFSGMLEMICSNPTLSDISFAQNDATTLYFDNQYFIDIQSGRGLLKIDSEIAKDPRTQPYVTAFGQNTQHFFDRFSSGFLKLSNYKVLVGGKGEIRRDCRFINS

Retrieve as FASTA  
Remarks Complete sequence from genomic. Incorrect prediction from phytozome (Short PS was missing which has been completed, frame shift in exon 3).
DNA
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGAAAATGGGATTAAGAGAATTGACAATGGTGTTGATTTTGTGGGGTTCTTGCTGCTTGTTTGCAGGTGGAAATGGGGTACTTGTGCTTCACTTTTATAAAAAGAGTTGCCCTAGTGCA
GAAATGCCAGTAAAAGAGGAGATGAAAAGAAATATGCTGAGTGATATTTCTTCTGCTGCTGCCATTCTTAGACTGGATTTTCATGATTGTCAAGTCGAT
GTAAATTTTTTTTTTCTTGTC
TCACAAGTAATATATTTATATGATCTTTGGTTTCCAAGCTTTGCTTATGTTTGTTACATTTTACTACAGGGTTGTGATGGATCAATTCTTCTCGGAAACTCAAACGGGATTACAACAGAA
ACATTATCGGACAAGAATTTCGGAATCCGGAAGGTTGATATTATCAATGAGATAAAGAGTTCCCTTGAAACAATTTGTCCTGAAACAGTTTCTTGTGCTGATTTTATCCAGTTAGCTGCA
AGGGATGCTGTATACCTG
GTGAGCTACATCAGTTTCTTGAAAGACAAGGAAACTTTGAAAAAAATTCTATGAACTTATATTTGTACTCAAGAAACTTTTTTGTTTCCACTTTCCAGTCTG
GAGGGCCATACATAGAGGTTTTAACTGGAAGAAGAGATGCCGTTTCGGGAAAGAAGGAGAGAGCCGATAATCAGCTTCCGACTTACGATATTTCTGTCAGCGAATTC
ACTGGGTTTTCCT
TCAGAAGAACATTAGTTTGGAAGATGGAGTTGCACTCATGGGTACACAACTTGTACTAAAAATAAAATTCACCTTTCTTCCAAATGCTAATAATGTGTGCATTTTAAAAAAAATTTATTT
CCCCTTTTCGCAATACGTTGTACATTGGATTGTTGGTCCAGATTTTAAAAGATGCAGAGGTTTATGAGAGAGACTGACAATAAACATGCAGTATGGAGCCAAATTGGAAGATGGCATGGC
CATCGGATATGTTATGTTAATATGTTACATTTTTCTAACTCTTGTTATGTGTTTCCAGGATCTCACACTCTAGGCGTAAGCCATTGCCGGAACTTCCAAAACAGGCTGTGGCCGATAAAG
GATGATACATTGTCACTAGCATTTTCAGGAATGCTGGAGATGATTTGCAGCAATCCTACGTTATCTGATATATCATTTGCCCAAAATGATGCTACTACTTTATATTTTGATAATCAATAC
TTCATTGACATTCAAAGTGGAAGAGGGTTACTGAAGATTGATTCTGAGATTGCCAAAGATCCCAGAACACAGCCTTATGTGACTGCATTTGGACAGAACACACAACACTTCTTTGATAGG
TTCTCATCTGGGTTTTTGAAGCTGTCAAATTACAAGGTTTTAGTAGGAGGAAAGGGAGAGATTAGGAGAGATTGCAGATTTATTAACAGTTA

Retrieve as FASTA