View Redoxidase 8652

Entry information : CclPrx05 (clementine0.9_014469m)

Entry ID	8652
Creation	2011-06-25 (Qiang Li)
Last sequence changes	2011-10-03 (Qiang Li)
Sequence status	complete
Reviewer	Qiang Li
Last annotation changes	2012-01-04 (Qiang LI)

Peroxidase information: CclPrx05 (clementine0.9_014469m)

Name (synonym)

CclPrx05 (clementine0.9_014469m)

Class

Class III peroxidase [Orthogroup: Prx100]

Taxonomy

Eukaryota Viridiplantae Streptophyta Rutaceae Citrus

Organism

Citrus clementina [TaxId: 85681 ]

Cellular localisation

N/D

Tissue type

N/D

Inducer

N/D

Repressor

N/D

Best BLASTp hits

Perox	score	E-value	CclPrx05 start..stop	S start..stop
CsPrx52	704	0	1..350	1..350
CsPrx61	686	0	1..350	1..350
CsPrx54	662	0	1..350	1..349
CclPrx68	661	0	1..350	1..349

Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '8652' 'complement(join(1103495..1103967,1104494..1104662,1105193..1105384,1105777..1105995))'

Exons►

Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size
N° 1	1105777..1105995	217	N° 2	1105193..1105384	190	N° 3	1104494..1104662	167	N° 4	1103495..1103967	471
complement(join(1103495..1103967,1104494..1104662,1105193..1105384,1105777..1105 995))

Literature and cross-references CclPrx05 (clementine0.9_014469m)

Literature	Forment,J. et al., Development of a citrus genome-wide EST collection and cDNA microarray as resources for genomic studies, Plant Mol. Biol. 57 (3), 375-391 (2005).
DNA ref.	Phytozome 12: scaffold_31 (1105995..1103495)

Protein sequence: CclPrx05 (clementine0.9_014469m)

Sequence Properties
first value : protein
second value (mature protein)

Length (aa):	350 (324)
PWM (Da):	37807.98 (35194.6)
PI (pH):	6.88 (6.88)	Peptide Signal:	cut: 27 range:27-350

Sequence
Send to BLAST
Send to Peroxiscan

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

MASLRFLLAAALVVAFVLEGSSPAQAQLSPSFYNSTCPNVTNIIR
EVLKNAFLSDIRIGASLIRLHFHDCFVNGCDASILLDNTTTIVSEKFAAPNNNSARGFEVVDDMKAAVERACPGVVSCADILTIAAEQSVALSGGPSWTNLLGRRDSRTANRTLANENLPGPNNSLERLKDRFRNVGLNDNFDLVALSGAHTFGRAQCRTFSDRLFNFNSTGNPDPTLNTTLLQQLRQLCPQGGNGSVLTNLDVTTPDVFDNKYFFNLQIHKGLLQSDQELFSTPGADTAAIVNNFGRNQTAFFENFVTSMIRMGNLK
PLTGNQGEIRLNCRRVNGNSNIATRSSSSEGDLVSSF

Retrieve as FASTA

Remarks

Complete sequence from genomic. 2 ESTs. Assembly by PeroxiBase Team.

DNA ►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

ATGGCTTCTCTTCGTTTTCTCCTTGCAGCTGCTCTTGTAGTTGCATTTGTGCTTGAGGGATCATCACCAGCTCAAGCTCAACTTTCTCCCTCTTTTTATAATTCCACATGCCCTAATGTA
ACCAACATAATTCGGGAGGTGCTTAAGAATGCTTTCTTGTCCGATATTCGCATCGGTGCCAGCCTCATCAGGCTTCATTTCCATGACTGTTTTGTTAATGTAATCAATCTCTACTCTTTG
ATTTTTCTTCTTTTTCAATTAATATTTTAAAATATGAATTAAGGTCCTCTTTTAATCTGAGTTTTGCATAGTTTTTTAAAAAATCTTGTGTAACATGTCCATTATTAGTAATATATGATT
GAAAATAACTACGTACACTTATATCCTTAACTTCTAACAGTCACAATTAAGCTCAGGAAAAGCTTACATCATGGGGGAAACCTGGTCTTACAAACTTATATAAGACAATTTGGATATATG
TATGTTTATCCAAAAAGAAAATGCACAAATATTCATTATTTTCTTAATAGTAAGATAAGAAGAATCTACCTAATTATTAAATTAACGATACAAGAGCAGTTGATCATAACAAGTTTTTAA
TGTTATTTCAGGGGGCTGTGATGCATCGATTTTGCTGGACAATACTACTACCATAGTAAGCGAGAAATTTGCTGCGCCAAATAATAATTCGGCGAGGGGTTTTGAAGTTGTTGATGACAT
GAAAGCTGCCGTTGAAAGGGCCTGTCCAGGCGTTGTTTCATGTGCTGATATTCTTACTATTGCAGCTGAACAATCTGTTGCTCTGGTATATATGAATTTCTATTAACAACTCATCTTGCT
CTACTACATATTTTTAGCTTAAAAGTGATTAAATTACTATGGTATCAGAGAGTAAGTCTGACTTTACATTCGTGTTGGAATTTTCAGTCCCTGAGTACTTAACTAAATGAATCCACATGC
TTAGTTTTAGGCGGCAACAGTCCACCGACATTACCATGTTGACTTCGTGATAGTGCCTGGACAAACTTTACCGTATGAAAAGGGAAGGCTTCTCCTTCCCCCCACCCCCCCAAAAAAAAA
GTGATGAGATTCATGGAGGACACATCAGTTTTACGTGAAAATATCTTCTTTATGTGATACAGTCTGGTTGAACCGTTCACTCAAAATTGTAATGTCGGGAAACTGCTAATTTTGGGTGCA
AAAAGACCCATATAAATACTAGCCAAATAAAGTCGGAAAGAGTAATTGCATGTCTATTTCTGATTTTAGTTAAATTTGCTTATTATGCATCTCTCAAGTGATTCTTTTGACTAATGATCG
TGGTTTTGGTATCAGTCTCAGGGGGTCCTTCATGGACAAATCTATTGGGAAGGAGAGACAGCAGAACAGCCAACAGGACTCTTGCAAATGAAAATCTTCCAGGACCGAACAATAGTCTTG
AGAGGCTCAAAGATAGATTCAGAAATGTTGGCCTCAACGATAATTTTGATCTTGTTGCACTCTCCGGTAATATTTGCTTATACACCCTTTGACTTGAGTACAAACAGACCTTGGAGTCTT
TTGGGATAAAGCAGTATTGGAGCCAGAATTAGAAATCTGGACGTGGAAAATTTTTTAATGCCAATACTGAGTCTTGAAATCTTAGAGATAGTTTAAATGTTGAATATCTTATTTAAAAAG
AAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTACTAAGACGACCACCGACACAAAGCACATTCATACTCTACTGCACCTAG
AAGGCTTGACTGAATATCCTAATGATGGAAGAAACTGTGTTTTAAAGTTTGACATTGGTGACTAAGAATATGTTAAAACGTTTGACAAATTTACTCCCCTTAATCACATCATGAAATTTG
AATTGCTTCCCAAAAAGAAAAGTGAGAACCACCATAATGAAACTCCATTATTATCCTTAATTTGTATGAATTTGAGTAAAAATAACAAAGATTGGCTATGCATTTTTTTCAGGAGAGCTC
ACACATTTGGAAGGGCTCAGTGCCGAACTTTTAGCGATAGGTTATTCAATTTCAACAGCACTGGCAATCCAGACCCAACACTTAACACAACCCTCTTACAACAACTAAGGCAACTATGCC
CACAAGGTGGAAACGGCAGCGTTCTAACTAATCTTGATGTCACAACACCTGATGTGTTTGACAACAAATACTTCTTCAATCTTCAAATACACAAGGGCCTTCTGCAGAGTGATCAAGAGT
TGTTTTCGACTCCCGGGGCCGATACCGCTGCCATTGTCAATAACTTTGGCAGGAACCAGACTGCTTTCTTTGAAAACTTTGTGACTTCAATGATAAGAATGGGCAATTTGAAACCACTGA
CAGGAAATCAAGGGGAGATTAGATTGAACTGCAGGAGGGTCAACGGAAACAGCAATATCGCAACAAGATCATCATCATCGGAGGGTGATTTGGTCAGCTCTTTCTGA

Retrieve as FASTA

CDS►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

Retrieve as FASTA