Entry information : SbPrx39 (Sobic.002G391700.1 [2.1] / SB02G040710 [1.4])
Entry ID 866
Creation 2010-01-11 (Christophe Dunand)
Last sequence changes 2010-01-11 (Christophe Dunand)
Sequence status complete
Reviewer Messaoudi
Last annotation changes 2014-08-04 (Messaoudi)
Peroxidase information: SbPrx39 (Sobic.002G391700.1 [2.1] / SB02G040710 [1.4])
Name (synonym) SbPrx39 (Sobic.002G391700.1 [2.1] / SB02G040710 [1.4])
Class Class III peroxidase    [Orthogroup: Prx209]
Taxonomy Eukaryota Viridiplantae Streptophyta Monocotyledons Poaceae Sorghum
Organism Sorghum bicolor    [TaxId: 4558 ]
Cellular localisation N/D
Tissue type Callus
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value SbPrx39
start..stop
S start..stop
SiPrx142 433 2e-153 42..368 1..320
SbPrx40 331 5e-112 6..368 12..382
HvPrx64 316 1e-106 4..368 6..356
ZmPrx62 316 2e-106 3..368 2..371
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 74611689..74612795 1107  
complement(join(74611689..74612795))


exon

Literature and cross-references SbPrx39 (Sobic.002G391700.1 [2.1] / SB02G040710 [1.4])
Literature Cordonnier-Pratt, M.-M. et al., unpublished.
DNA ref. Phytozome 12:   chromosome_2 (74612795..74611689)
Protein sequence: SbPrx39 (Sobic.002G391700.1 [2.1] / SB02G040710 [1.4])
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   368 (346)
PWM (Da):   %s   38314.1 (36171.9) Transmb domain:   %s   i7-29o
PI (pH):   %s   5.03 (4.89) Peptide Signal:   %s   cut: 23 range:23-368
Sequence
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Send to Peroxiscan
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MDAKLAALIA LLALLGPVAC HGATVICLGG WVRPVPSLLG GLVCPGNLLP NPSLNPIPAP SSSVLKVGYY NNSSNSNACP NAEDIVRKVV EDAVSKDPGT GAGLIRLFFH DCFVRGCDAS  VLLRNTSGGS TSEQTEMFGL PNVNSLRGFE VIDAAKAALE SACPGVVSCA DTLAFAARDA SSVLSGGRIS SAFAMPAGRL DGRVSLANET TDNLPGPFCD LDALTNFFAA KGLDRDDMVT  LSGAHTIGQA RCAFVSNRTD MNATLAKDLR RDKCRSGGNT KVALDYKTPD TMDVQYYQNV NDDDVVLDSD AALSSPATKP LVDTYAAGSS LSLWETKFAA AMVKMGSIEV KTSPGADAEI 
RKKCSIYN 

Retrieve as FASTA  
Remarks Complete sequence from genomic (chromo 2, no intron). No EST.
DNA
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.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGACGCCA AGCTTGCCGC CCTCATCGCC TTGCTCGCAT TGCTCGGTCC TGTGGCTTGC CATGGCGCCA CCGTCATCTG CCTGGGCGGT TGGGTTCGCC CAGTCCCATC ACTCCTCGGC  GGGCTTGTCT GCCCCGGAAA CCTGCTCCCA AACCCTTCCC TGAACCCGAT CCCTGCACCC TCATCGTCAG TTCTCAAGGT CGGCTACTAC AACAACAGCA GCAACAGCAA CGCGTGCCCC  AACGCGGAAG ACATCGTGAG GAAGGTCGTG GAGGACGCGG TGAGCAAAGA CCCCGGCACG GGCGCGGGGC TCATCCGCCT CTTCTTCCAC GACTGCTTCG TCCGGGGCTG CGACGCCTCC  GTCCTCCTCA GGAACACGAG CGGCGGCTCC ACCAGCGAGC AGACGGAGAT GTTCGGCCTC CCCAACGTGA ACAGCCTCCG CGGCTTCGAG GTGATCGACG CGGCCAAGGC GGCGCTGGAG  TCGGCGTGCC CTGGCGTCGT CTCGTGCGCC GACACCCTCG CGTTCGCCGC CCGCGACGCG TCCAGCGTGC TCAGCGGCGG CAGGATCAGC AGCGCCTTCG CGATGCCCGC CGGCCGCCTC  GACGGGCGCG TGTCGCTCGC CAACGAGACC ACGGACAACC TGCCCGGCCC GTTCTGTGAC CTCGACGCGC TCACCAACTT CTTCGCCGCC AAGGGCCTCG ACAGAGACGA CATGGTCACC  CTCTCCGGGG CGCACACCAT CGGCCAGGCA CGCTGCGCTT TCGTGTCCAA CCGGACGGAC ATGAACGCCA CCCTCGCTAA GGATCTCAGG AGGGACAAGT GCAGGAGCGG CGGCAACACG  AAGGTGGCGC TGGACTACAA GACCCCTGAC ACCATGGACG TGCAGTACTA CCAGAACGTG AACGACGATG ACGTGGTGCT GGACTCGGAC GCTGCGCTGA GCTCGCCGGC GACGAAGCCG  CTGGTGGATA CCTACGCGGC CGGTTCTTCG TTGAGTCTGT GGGAGACCAA GTTCGCGGCA GCGATGGTGA AGATGGGCAG CATCGAGGTC AAGACCAGCC CCGGTGCGGA CGCCGAGATC 
AGGAAGAAGT GCTCCATTTA CAACTAA 

Retrieve as FASTA  
CDS
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.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGACGCCA AGCTTGCCGC CCTCATCGCC TTGCTCGCAT TGCTCGGTCC TGTGGCTTGC CATGGCGCCA CCGTCATCTG CCTGGGCGGT TGGGTTCGCC CAGTCCCATC ACTCCTCGGC  GGGCTTGTCT GCCCCGGAAA CCTGCTCCCA AACCCTTCCC TGAACCCGAT CCCTGCACCC TCATCGTCAG TTCTCAAGGT CGGCTACTAC AACAACAGCA GCAACAGCAA CGCGTGCCCC  AACGCGGAAG ACATCGTGAG GAAGGTCGTG GAGGACGCGG TGAGCAAAGA CCCCGGCACG GGCGCGGGGC TCATCCGCCT CTTCTTCCAC GACTGCTTCG TCCGGGGCTG CGACGCCTCC  GTCCTCCTCA GGAACACGAG CGGCGGCTCC ACCAGCGAGC AGACGGAGAT GTTCGGCCTC CCCAACGTGA ACAGCCTCCG CGGCTTCGAG GTGATCGACG CGGCCAAGGC GGCGCTGGAG  TCGGCGTGCC CTGGCGTCGT CTCGTGCGCC GACACCCTCG CGTTCGCCGC CCGCGACGCG TCCAGCGTGC TCAGCGGCGG CAGGATCAGC AGCGCCTTCG CGATGCCCGC CGGCCGCCTC  GACGGGCGCG TGTCGCTCGC CAACGAGACC ACGGACAACC TGCCCGGCCC GTTCTGTGAC CTCGACGCGC TCACCAACTT CTTCGCCGCC AAGGGCCTCG ACAGAGACGA CATGGTCACC  CTCTCCGGGG CGCACACCAT CGGCCAGGCA CGCTGCGCTT TCGTGTCCAA CCGGACGGAC ATGAACGCCA CCCTCGCTAA GGATCTCAGG AGGGACAAGT GCAGGAGCGG CGGCAACACG  AAGGTGGCGC TGGACTACAA GACCCCTGAC ACCATGGACG TGCAGTACTA CCAGAACGTG AACGACGATG ACGTGGTGCT GGACTCGGAC GCTGCGCTGA GCTCGCCGGC GACGAAGCCG  CTGGTGGATA CCTACGCGGC CGGTTCTTCG TTGAGTCTGT GGGAGACCAA GTTCGCGGCA GCGATGGTGA AGATGGGCAG CATCGAGGTC AAGACCAGCC CCGGTGCGGA CGCCGAGATC 
AGGAAGAAGT GCTCCATTTA CAACTAA 

Retrieve as FASTA