View Redoxidase 8665

Entry information : CclPrx104 (clementine0.9_032148m)

Entry ID	8665
Creation	2011-06-25 (Qiang Li)
Last sequence changes	2011-10-03 (Qiang Li)
Sequence status	complete
Reviewer	Qiang Li
Last annotation changes	2012-01-04 (Qiang LI)

Peroxidase information: CclPrx104 (clementine0.9_032148m)

Name (synonym)

CclPrx104 (clementine0.9_032148m)

Class

Class III peroxidase [Orthogroup: Prx027]

Taxonomy

Eukaryota Viridiplantae Streptophyta Rutaceae Citrus

Organism

Citrus clementina [TaxId: 85681 ]

Cellular localisation

N/D

Tissue type

N/D

Inducer

N/D

Repressor

N/D

Best BLASTp hits

Perox	score	E-value	CclPrx104 start..stop	S start..stop
VvPrx31	516	0	1..328	1..327
VvPrx30	502	0	1..328	1..327
NnPrx21	486	5.89e-175	1..328	1..328
NnPrx14	481	1.2e-172	1..328	1..329

Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '8665' 'complement(join(1078693..1079099,1079195..1079357,1079466..1079654,1079975..1080202))'

Exons►

Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size
N° 1	1079975..1080202	226	N° 2	1079466..1079654	187	N° 3	1079195..1079357	161	N° 4	1078693..1079099	405
complement(join(1078693..1079099,1079195..1079357,1079466..1079654,1079975..1080 202))

Literature and cross-references CclPrx104 (clementine0.9_032148m)

DNA ref.	Phytozome 12: scaffold_79 (1080202..1078693)

Protein sequence: CclPrx104 (clementine0.9_032148m)

Sequence Properties
first value : protein
second value (mature protein)

Length (aa):	328 (301)
PWM (Da):	35896.46 (32834.7)
PI (pH):	9.05 (8.88)	Peptide Signal:	cut: 28 range:28-328

Sequence
Send to BLAST
Send to Peroxiscan

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

MATQKLASLFFLQQIIHVLFILHLANADHGLKLGFYQKTCPDAEA
ITRKITHQHISRAPTLAAPLLRMHFHDCFIRGCDGSVLLNSTKNNQAEKDAFANLSLRGYQVIDAVKSALENKCPGVVSCADILALVTRDAVSMIKGPFWDVPTGRRDGRESVASETRDLPPPFGNITLLKQKFAAKGLSVKDLVVLSGAH
TIGTSHCSSFETRLYNFTGKGDTDPTLDPNYVVHLKRKCQPGDTTTLVKMDPGSFRTFDGDYYTLVAKRRGLFQSDAALLEDTETKSYVKLQANTYGSTFAKDFAESMVNMGKIGVLTGK
AGEIRKHCAFVN

Retrieve as FASTA

Remarks

Complete sequence from genomic.

DNA ►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

ATGGCTACCCAAAAGCTTGCATCACTTTTCTTTCTTCAACAGATCATTCATGTTCTTTTTATCTTGCACCTCGCAAATGCGGACCATGGCCTAAAACTCGGGTTCTACCAGAAGACGTGC
CCAGATGCTGAGGCCATTACTAGAAAGATAACACATCAACACATTTCTCGAGCACCAACTCTTGCTGCTCCTTTATTAAGGATGCATTTTCATGATTGTTTCATTAGGGTAAGTTAAGCG
CAAATCGATTTTCTAACTTTTTACCTCATCATGATTTAAATTTGAGTGACCAATTAAAAATATCTACTTAAAAACATGTCAGTCAAACCTACGTGAGGAAGTTGTTAATTGATTAAAAGG
CATCATAGAATCAAAATATTATGCAATTCATCATCAAAATTGTGAAAAAGACCAATTAATGCTTAATTTTTTTCTGTCTCATAATATGAATTGATTTTTTTTTAACATTTATATTATAGC
TCCCACGTACACGATATTAATTATTGTTACCTAATGTTTATAATTAGTTAGTACCTAATTGCTGGCAGGGGGATGTGATGGTTCCGTGCTTCTAAATTCTACCAAAAACAATCAAGCGGA
GAAAGATGCATTCGCCAACCTAAGCCTGAGAGGATACCAAGTCATTGATGCTGTAAAATCTGCACTAGAAAATAAGTGCCCTGGTGTTGTTTCTTGCGCTGACATATTAGCTTTGGTTAC
TAGAGACGCAGTCAGCATGGTAAGTTGGTAACCAACTGTCCTCCATATATGTATACATATGTACTTCATCAAATTCAACATTGATATATACATGTATGGTTCATTAAAATCTATCATTTT
GTTTCAGATATAAAAGGACCATTTTGGGATGTTCCCACGGGACGAAGAGATGGAAGAGAGTCGGTTGCCTCAGAGACCAGAGACTTGCCACCTCCTTTTGGCAACATAACATTGCTAAAG
CAAAAGTTTGCAGCCAAGGGTTTAAGCGTTAAAGACCTTGTGGTTTTATCAGGTAATCCGAAATTTGTAACGTATGCTTTTCTAGATAAAAGATTTGTCAAGAGACTCTAATTAGTTCAC
TTGAGCCTTTTTTTTTTTTTTTAATAGGGGGGCCCATACTATTGGGACGTCTCATTGCAGTTCATTTGAGACTCGTTTGTACAATTTCACTGGCAAAGGCGACACAGACCCCACGTTGGA
TCCCAACTATGTGGTGCATTTGAAGAGAAAATGCCAGCCAGGGGACACAACTACACTCGTTAAAATGGATCCTGGAAGCTTCAGGACATTTGATGGAGATTACTACACTCTTGTTGCTAA
AAGAAGAGGGCTCTTCCAATCTGATGCGGCTCTTCTTGAGGACACTGAAACAAAATCTTACGTCAAACTTCAGGCTAATACCTATGGATCTACATTTGCTAAAGATTTTGCTGAGTCTAT
GGTGAACATGGGCAAAATTGGAGTGCTCACGGGCAAGGCTGGTGAAATTAGGAAGCATTGTGCATTTGTCAATTAA

Retrieve as FASTA

CDS►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

Retrieve as FASTA