Entry information : CclPrx12 (clementine0.9_011798m / Ciclev10020412m[1.0])
Entry ID 8681
Creation 2011-06-25 (Qiang Li)
Last sequence changes 2014-04-07 (Christophe Dunand)
Sequence status complete
Reviewer Achraf Jemmat
Last annotation changes 2016-01-07 (Achraf Jemmat)
Peroxidase information: CclPrx12 (clementine0.9_011798m / Ciclev10020412m[1.0])
Name (synonym) CclPrx12 (clementine0.9_011798m / Ciclev10020412m[1.0])
Class Class III peroxidase    [Orthogroup: Prx003]
Taxonomy Eukaryota Viridiplantae Streptophyta Rutaceae Citrus
Organism Citrus clementina    [TaxId: 85681 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value CclPrx12
start..stop
S start..stop
CsPrx30 817 0 1..406 1..406
VvPrx25 425 2e-149 95..404 15..323
RcPrx66 420 2e-147 98..404 18..323
CsaPrx30 416 1e-145 94..404 18..328
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 2764172..2765392 1221  
join(2764172..2765392)


exon

Literature and cross-references CclPrx12 (clementine0.9_011798m / Ciclev10020412m[1.0])
DNA ref. Phytozome 12:   scaffold_3 (2764172..2765392)
Cluster/Prediction ref. UniGene:   Ccl.12681
Protein sequence: CclPrx12 (clementine0.9_011798m / Ciclev10020412m[1.0])
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   406 (385)
PWM (Da):   %s   43548.12 (41301.8)  
PI (pH):   %s   9.21 (9.23) Peptide Signal:   %s   cut: 22 range:22-406
Sequence 0
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MAVLPISVIF LAFISIPYSI ANPNSPNASP KPSPVASPKP SPRASPKPSP VASPKPSPLA SPKPSPVASP KPSPLASPKP SPAASPNPRP LASPMPSAKP ALRADYYKAT CPDFEKIVRE  FVHQKQTQSP STAAGALRVF MHDCFVDGCD GSVLISSNAF NVAERDSDIN LSLPGDAFDV VIKIKNALED ACPGVVSCAD ILTASTRNLV VMAGGPRFNV SFGRKDGLVS QAARIPGNLP  TNNMTMDEIL KMFASKGFSI QEYVALMGAH TIGFAHCKEF SDRLFKFAPN QPTDPELNPK YAEALKAACK NHEQNITMTA FNDVMSPGKF DNSYFRGLPR GLGLLRVDNM LVKDPRTKPL 
VDQYASNEVK FFADFAAAME KLSLLEVKTD PKDGNVRRRC DAFNDA 

Retrieve as FASTA  
Remarks Complete sequence from genomic and 10 ESTs. Very long PS confirmed with ESTs.
DNA
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCCGTGC TTCCTATCTC CGTTATCTTC CTTGCATTTA TCTCCATTCC CTACTCCATT GCCAATCCTA ATTCTCCCAA TGCCAGTCCC AAACCGAGTC CTGTAGCTAG TCCTAAGCCA  AGCCCTCGTG CTAGTCCCAA ACCAAGTCCT GTAGCTAGTC CTAAGCCAAG TCCTCTTGCT AGTCCCAAAC CAAGTCCTGT AGCTAGTCCT AAGCCAAGTC CTCTCGCTAG TCCGAAACCA  AGTCCTGCAG CTAGTCCTAA CCCAAGGCCC CTCGCTAGTC CCATGCCTTC TGCTAAGCCG GCCCTCCGCG CGGACTACTA TAAGGCGACA TGCCCAGACT TTGAAAAAAT CGTCCGTGAG  TTCGTGCACC AGAAGCAAAC ACAGAGCCCC AGCACAGCTG CGGGTGCCCT CCGGGTTTTC ATGCACGACT GCTTTGTGGA CGGGTGCGAT GGGTCCGTCC TCATCTCGTC GAATGCATTC  AACGTGGCGG AGCGTGACAG TGACATCAAT CTTTCCCTAC CCGGCGACGC ATTTGATGTT GTCATCAAGA TAAAGAATGC CCTTGAGGAT GCCTGCCCTG GCGTGGTGTC ATGCGCTGAC  ATCTTAACCG CCTCCACTCG TAACCTGGTT GTTATGGCAG GGGGACCTCG TTTCAATGTG TCATTCGGCC GCAAGGATGG GCTTGTCTCT CAAGCGGCCA GGATCCCAGG GAATTTACCA  ACCAATAACA TGACAATGGA CGAAATTCTC AAAATGTTTG CAAGCAAGGG ATTCTCCATT CAGGAATATG TTGCATTGAT GGGTGCCCAC ACCATAGGTT TCGCTCACTG CAAGGAGTTT  TCTGACAGGC TCTTTAAATT CGCCCCGAAT CAGCCAACAG ACCCTGAATT GAACCCAAAG TATGCCGAGG CTTTGAAAGC CGCCTGCAAA AATCACGAAC AAAACATCAC GATGACTGCT  TTCAACGATG TGATGTCACC TGGCAAGTTT GATAACTCTT ATTTCAGGGG TTTGCCCAGA GGCTTGGGGC TGTTGAGAGT AGATAATATG CTGGTCAAGG ATCCTAGGAC CAAGCCCCTG  GTGGATCAGT ATGCTAGCAA TGAGGTTAAA TTCTTCGCTG ATTTTGCTGC TGCTATGGAG AAACTTAGTC TTCTTGAAGT CAAGACTGAT CCCAAGGATG GAAACGTCAG ACGCCGCTGC 
GATGCTTTCA ATGATGCTTA A 

Retrieve as FASTA  
CDS
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCCGTGC TTCCTATCTC CGTTATCTTC CTTGCATTTA TCTCCATTCC CTACTCCATT GCCAATCCTA ATTCTCCCAA TGCCAGTCCC AAACCGAGTC CTGTAGCTAG TCCTAAGCCA  AGCCCTCGTG CTAGTCCCAA ACCAAGTCCT GTAGCTAGTC CTAAGCCAAG TCCTCTTGCT AGTCCCAAAC CAAGTCCTGT AGCTAGTCCT AAGCCAAGTC CTCTCGCTAG TCCGAAACCA  AGTCCTGCAG CTAGTCCTAA CCCAAGGCCC CTCGCTAGTC CCATGCCTTC TGCTAAGCCG GCCCTCCGCG CGGACTACTA TAAGGCGACA TGCCCAGACT TTGAAAAAAT CGTCCGTGAG  TTCGTGCACC AGAAGCAAAC ACAGAGCCCC AGCACAGCTG CGGGTGCCCT CCGGGTTTTC ATGCACGACT GCTTTGTGGA CGGGTGCGAT GGGTCCGTCC TCATCTCGTC GAATGCATTC  AACGTGGCGG AGCGTGACAG TGACATCAAT CTTTCCCTAC CCGGCGACGC ATTTGATGTT GTCATCAAGA TAAAGAATGC CCTTGAGGAT GCCTGCCCTG GCGTGGTGTC ATGCGCTGAC  ATCTTAACCG CCTCCACTCG TAACCTGGTT GTTATGGCAG GGGGACCTCG TTTCAATGTG TCATTCGGCC GCAAGGATGG GCTTGTCTCT CAAGCGGCCA GGATCCCAGG GAATTTACCA  ACCAATAACA TGACAATGGA CGAAATTCTC AAAATGTTTG CAAGCAAGGG ATTCTCCATT CAGGAATATG TTGCATTGAT GGGTGCCCAC ACCATAGGTT TCGCTCACTG CAAGGAGTTT  TCTGACAGGC TCTTTAAATT CGCCCCGAAT CAGCCAACAG ACCCTGAATT GAACCCAAAG TATGCCGAGG CTTTGAAAGC CGCCTGCAAA AATCACGAAC AAAACATCAC GATGACTGCT  TTCAACGATG TGATGTCACC TGGCAAGTTT GATAACTCTT ATTTCAGGGG TTTGCCCAGA GGCTTGGGGC TGTTGAGAGT AGATAATATG CTGGTCAAGG ATCCTAGGAC CAAGCCCCTG  GTGGATCAGT ATGCTAGCAA TGAGGTTAAA TTCTTCGCTG ATTTTGCTGC TGCTATGGAG AAACTTAGTC TTCTTGAAGT CAAGACTGAT CCCAAGGATG GAAACGTCAG ACGCCGCTGC 
GATGCTTTCA ATGATGCTTA A 

Retrieve as FASTA