Entry information : CclPrx18 (clementine0.9_014516m)
Entry ID 8683
Creation 2011-06-25 (Qiang Li)
Last sequence changes 2011-12-13 (Qiang Li)
Sequence status complete
Reviewer Not yet reviewed
Last annotation changes 2011-12-05 (Qiang Li)
Peroxidase information: CclPrx18 (clementine0.9_014516m)
Name (synonym) CclPrx18 (clementine0.9_014516m)
Class Class III peroxidase    [Orthogroup: Prx032]
Taxonomy Eukaryota Viridiplantae Streptophyta Rutaceae Citrus
Organism Citrus clementina    [TaxId: 85681 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value CclPrx18
start..stop
S start..stop
CsPrx43 680 0 1..343 1..348
PtPrx88 440 2e-156 14..338 1..323
RcPrx68 430 2e-152 30..338 20..325
MePrx68 427 2e-151 31..338 21..325
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 355955..356212 258 N° 2 355360..355539 180 N° 3 355107..355272 166 N° 4 354878..355023 146
N° 5 354578..354853 276  
complement(join(354578..354853,354878..355023,355107..355272,355360..355539,3559 55..356212))


exon

Literature and cross-references CclPrx18 (clementine0.9_014516m)
DNA ref. Phytozome 12:   scaffold_84 (356212..354578)
Protein sequence: CclPrx18 (clementine0.9_014516m)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   343
PWM (Da):   %s   36495.82  
PI (pH):   %s   7.95
Sequence 384
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MSERVDHIWKTKKVKQAVALLILRQCLLANIAGLSHGALQVGFYRGKCGIADVEMIVAGVVTARFFRDPTVVAALIRLQFHDCFVNGCDASILIDATNSEKTAIPNLTIRGYDIIDEAKAAVERFCPGVVSCADLIAIAARDAVFLGGGGRYEVQTGRRDGLVSLAQNVSISIPGPSASIPQTMAVFANKGLNLTDMVLLMGGHSVGVAHCSIFKDRLYNFRSTGRPDPTMDSFLANKLRARCPLDxxxxxxxVDLDQNPFQIPFLDNSYYRQLMLNRGVLEIDQELALHPLTRATVMSIANALDFPIQFGAAMVKMGAIEVLTGMQGEIRRFCTATNWPPFT

Retrieve as FASTA  
Remarks Complete sequence from genomic. Incorrect prediction from phyozome (An extra short seq LDTTTT has been removed).
DNA
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
GAGAGAGTAGATCATATTTGGAAGACGAAGAAGGTGAAGCAGGCTGTGGCTTTGTTGATTCTCAGGCAGTGTTTATTAGCAAACATCGCAGGATTGAGCCATGGTGCATTACAGGTAGGA
TTTTACAGAGGAAAATGTGGGATTGCTGATGTTGAGATGATAGTAGCCGGTGTTGTCACAGCAAGGTTCTTCAGAGATCCCACTGTCGTGGCTGCCCTCATACGCTTGCAGTTTCATGAT
TGCTTTGTCAATGTAAGC
TTCCATTTTCCCAAGCATATATTCTTGCTTAAGTTTAGAACTGCATTGTTTGCATTCCATGCACCAACAAATACGCATAGTTAATCAATTTTATCTAGTCCT
TAAAACTTCTATGAAGCAAGAAACATTGACGCTGCATTGGTTGGTAAACATTCTTTGTGTGCACACCGCGCATGTTTCATTCTTTTATTTCTTTTATGTTCTTTAATTGCAAATGTTTCC
CGTCTATACTTTTATTATACAACGAATTAGACATACTGAATTGAAATTCATTAAATGGTCTACATACATTTGGAACTGGGTTTCTGCCTAGGAGTTTAATAAATCTGAACAATTATCTTG
ATATTTAAGCACTGATAAAACACAATATCAAACTAAATGCAAATCTGTGGGAATGGTGATGAGAAAGGGTTGCGACGCATCAATTCTTATAGATGCCACCAACAGCGAGAAAACAGCAAT
TCCAAATCTGACCATAAGGGGTTATGATATCATAGACGAAGCAAAGGCTGCTGTTGAAAGATTTTGTCCTGGTGTCGTTTCCTGTGCTGATCTCATTGCCATTGCTGCTAGAGATGCTGT
TTTCTTGGTACTT
AAAACTTTCTCTCTGCGCATGCCATATCTGCTATATATTCAATCAAACTCAAAATTACTGTAATTGACAATTGAACTGCAGGGCGGCGGAGGAAGATATGAGGTGCA
AACAGGAAGAAGAGACGGTTTAGTGTCTCTAGCTCAGAATGTGTCCATTTCTATCCCAGGTCCTTCAGCTTCGATCCCTCAGACTATGGCCGTGTTTGCTAACAAAGGCCTCAATCTTAC
CGACATGGTTCTTCTGATGGGTATTT
AGCTTAAAACACTTTCAATGAAAGCACTTGAAAATTCTTGTGTTCATAATTTCCATTGCATTTTATGATTGCTTTAGGAGGTCACTCTGTAGGA
GTAGCACATTGCTCAATCTTCAAAGATCGTCTCTACAATTTCAGAAGCACAGGCAGACCCGACCCCACAATGGATTCATTCCTCGCGAATAAGCTGAGAGCGCGGTGCCCTCTAGACNNN
NNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNCGNNNNNNGTTGATCTTGATCAAAATCCATTTCAAATTCCATTCCTGGACAATTCCTACTACAGACAGTTAATGCTAAACAGAGGA
GTGCTCGAAATCGATCAAGAATTGGCATTACACCCATTGACAAGAGCCACTGTGATGAGCATAGCCAATGCCTTAGACTTTCCCATACAGTTTGGTGCTGCAATGGTGAAAATGGGAGCC
ATTGAAGTTCTCACTGGCATGCAAGGAGAGATTAGGAGATTCTGTACAGCCACAAATTGGCCACCATTTACATA

Retrieve as FASTA  
CDS
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
GAGAGAGTAGATCATATTTGGAAGACGAAGAAGGTGAAGCAGGCTGTGGCTTTGTTGATTCTCAGGCAGTGTTTATTAGCAAACATCGCAGGATTGAGCCATGGTGCATTACAGGTAGGA
TTTTACAGAGGAAAATGTGGGATTGCTGATGTTGAGATGATAGTAGCCGGTGTTGTCACAGCAAGGTTCTTCAGAGATCCCACTGTCGTGGCTGCCCTCATACGCTTGCAGTTTCATGAT
TGCTTTGTCAATGTAAGC
GACGCATCAATTCTTATAGATGCCACCAACAGCGAGAAAACAGCAATTCCAAATCTGACCATAAGGGGTTATGATATCATAGACGAAGCAAAGGCTGCTGTT
GAAAGATTTTGTCCTGGTGTCGTTTCCTGTGCTGATCTCATTGCCATTGCTGCTAGAGATGCTGTTTTCTTGGTACTT
GGAGGAAGATATGAGGTGCAAACAGGAAGAAGAGACGGTTTA
GTGTCTCTAGCTCAGAATGTGTCCATTTCTATCCCAGGTCCTTCAGCTTCGATCCCTCAGACTATGGCCGTGTTTGCTAACAAAGGCCTCAATCTTACCGACATGGTTCTTCTGATGGGT
ATTT
ACTCTGTAGGAGTAGCACATTGCTCAATCTTCAAAGATCGTCTCTACAATTTCAGAAGCACAGGCAGACCCGACCCCACAATGGATTCATTCCTCGCGAATAAGCTGAGAGCGCGG
TGCCCTCTAGACNNNNNNNNNNNNNNNNNN
NNNGTTGATCTTGATCAAAATCCATTTCAAATTCCATTCCTGGACAATTCCTACTACAGACAGTTAATGCTAAACAGAGGAGTGCTCGAA
ATCGATCAAGAATTGGCATTACACCCATTGACAAGAGCCACTGTGATGAGCATAGCCAATGCCTTAGACTTTCCCATACAGTTTGGTGCTGCAATGGTGAAAATGGGAGCCATTGAAGTT
CTCACTGGCATGCAAGGAGAGATTAGGAGATTCTGTACAGCCACAAATTGGCCACCATTTACATA

Retrieve as FASTA