View Redoxidase 8699

Entry information : CclPrx42 (clementine0.9_015750m)

Entry ID	8699
Creation	2011-06-25 (Qiang Li)
Last sequence changes	2011-10-03 (Qiang Li)
Sequence status	complete
Reviewer	Qiang Li
Last annotation changes	2012-01-04 (Qiang LI)

Peroxidase information: CclPrx42 (clementine0.9_015750m)

Name (synonym)

CclPrx42 (clementine0.9_015750m)

Class

Class III peroxidase [Orthogroup: Prx026]

Taxonomy

Eukaryota Viridiplantae Streptophyta Rutaceae Citrus

Organism

Citrus clementina [TaxId: 85681 ]

Cellular localisation

N/D

Tissue type

N/D

Inducer

N/D

Repressor

N/D

Best BLASTp hits

Perox	score	E-value	CclPrx42 start..stop	S start..stop
CsPrx39	615	0	18..315	1..298
RcPrx44	474	6.27e-170	34..316	12..293
PtPrx52	459	3.04e-164	43..316	27..300
PpePrx76	456	8.62e-163	38..314	16..292

Gene structure Fichier

Exons►

Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size
N° 1	854681..854971	289	N° 2	854371..854550	178	N° 3	854103..854268	164	N° 4	853699..854007	307
N° 5	853377..853408	30
complement(join(853377..853408,853699..854007,854103..854268,854371..854550,8546 81..854971))

Literature and cross-references CclPrx42 (clementine0.9_015750m)

DNA ref.	Phytozome 12: scaffold_63 (854971..853377)

Protein sequence: CclPrx42 (clementine0.9_015750m)

Sequence Properties
first value : protein
second value (mature protein)

Length (aa):	325
PWM (Da):	35140.45
PI (pH):	5.71

Sequence
Send to BLAST
Send to Peroxiscan

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

MVKTEAAFRLSTTERLLMSSNPGIGSFCKANGYVLFVFVLFRLAASPCCASLSFNFYAASCPSAEFMVANTVRSASSFDRTIPGKLLRLLFHDCFVEGCDASVLLQGNGTERSDPANASL
GGFEVIDSAKRVLEIFCPGTVSCADIIALAARDSVEIAGGPAIQIPTGRRDGRASAAENVRANIVDTTFTMNEMIKAFSSKGLSMDDLVTLSGAHTIGSAHCNAFNDRFREDPKGKLTLI
DTSLDSSYANELMRKCPANASSSVTVNNDPETSFVFDNQYYRNLLAHKGLFQSDSVLLHDERTRKQVENFANDQEKRLLAEVLIE

Retrieve as FASTA

Remarks

Complete sequence from genomic.

DNA ►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

ATGGTAAAAACTGAAGCGGCATTCAGACTCAGTACAACTGAAAGACTTCTCATGAGTTCAAATCCAGGAATTGGTTCATTTTGTAAAGCTAATGGCTACGTACTTTTTGTTTTTGTTCTG
TTCCGTCTTGCTGCTTCTCCTTGCTGTGCCAGCCTCTCTTTCAACTTCTATGCAGCTTCATGCCCCTCTGCTGAGTTCATGGTTGCAAACACGGTGAGATCAGCTTCCTCTTTTGATCGC
ACCATCCCCGGGAAGCTCCTCCGCCTGCTCTTCCATGACTGCTTCGTTGAGGTAAGTGGTTCTTATCGAACAATTGCAATGTTGGAGTTCTCTTCCCACTAAATTTTAAAATCAAAGACT
GATGTGGATATGTAGTAGTCATTGGAAACAAAAACCTGAAAACTTTCACCAAAACCACCAGGGGGTTGTGATGCTTCTGTACTGCTACAAGGAAATGGGACAGAGCGAAGTGATCCAGCA
AACGCATCTCTTGGAGGGTTTGAAGTTATTGATTCGGCGAAAAGAGTTCTTGAAATCTTCTGTCCTGGGACTGTTTCTTGTGCTGATATTATTGCTTTGGCCGCTAGAGATTCTGTTGAA
ATAGTAAGATTTTCCCCTCTCATTAGTTACTGCTTTGTGCTGCTACTGCTCATTTTTATTTCATGTTGGTTGGGTTTCTTTCCATTCACAAAGACTTGAAAACAGGCGCTGGTGGCCCGG
CAATTCAAATTCCTACAGGCAGGAGGGATGGGAGAGCATCAGCAGCTGAAAACGTTAGAGCCAACATTGTAGATACAACATTCACAATGAATGAGATGATAAAGGCCTTTTCCTCTAAAG
GCTTGTCCATGGATGACCTCGTTACTCTATCAGGTATATCTCAGGACACGTTTGTAACTATTTTGCTTCTGCTTGATTTTAGAAAAATACAACATCTGAAAGTGTTTGATAAATTCCCAC
TTGAGCAGGAGAGCTCACACAATTGGATCAGCTCATTGTAATGCATTCAATGATCGGTTTCGAGAGGACCCAAAGGGGAAACTGACATTGATAGACACGTCTCTGGACAGTTCTTATGCA
AATGAGCTAATGAGAAAGTGCCCAGCAAATGCAAGCTCATCTGTAACCGTTAACAATGATCCTGAAACATCATTTGTGTTCGATAATCAGTACTACCGCAACCTCTTAGCACACAAAGGG
CTGTTTCAATCAGATTCTGTTCTTTTACACGATGAAAGAACAAGGAAGCAAGTGGAGAATTTTGCAAATGATCAAGAAAGTTTCTTCAGTAACTGGGGTCTGTCATTTTTGAAGGTTACT
AGCATTGGAGTGAAAACTGAAGATGAAGGGGAAATTCGACAAACTTGTTCAATGACTAATGGGTGAAGAATTATCAAGATCCAAAGCCTACACCAAATTGCTAGTCTAATAATTGCCTAA
AACTTTGGACCAATTTTCACGTACATATGTAAAGACCTTATAATTTGTTTGATATTTGTTGGTAATGGTTGAAGTTTTTGCTGTGGTTTCCTTTTTATTCATTAGGTCTTTTTTTTTTTT
TTTACGCAGAAAAAGATTGTTAGCAGAAGTTTTGATAGAATGA

Retrieve as FASTA

CDS►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

Retrieve as FASTA