Entry information : CclPrx67 (clementine0.9_020100m)
Entry ID 8711
Creation 2011-06-25 (Qiang Li)
Last sequence changes 2011-10-03 (Qiang Li)
Sequence status partial
Reviewer Qiang Li
Last annotation changes 2012-01-04 (Qiang LI)
Peroxidase information: CclPrx67 (clementine0.9_020100m)
Name (synonym) CclPrx67 (clementine0.9_020100m)
Class Class III peroxidase     [Orthogroup: Prx040]*
Taxonomy Eukaryota Viridiplantae Streptophyta Rutaceae Citrus
Organism Citrus clementina    [TaxId: 85681 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value CclPrx67
start..stop
S start..stop
CsPrx61 488 2e-176 1..242 109..350
CsPrx52 483 9e-175 1..242 109..350
CclPrx05 483 1e-174 1..242 109..350
CclPrx124 462 5e-168 1..242 1..242
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 1719983..1720711 729  
join(1719983..1720711)


exon

Literature and cross-references CclPrx67 (clementine0.9_020100m)
DNA ref. Phytozome 12:   scaffold_37 (1719983..1720711)
Protein sequence: CclPrx67 (clementine0.9_020100m)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   242
PWM (Da):   %s   26386.24  
PI (pH):   %s   8.51
Sequence 0
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Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MKAAVERACP GVVSCADILT IAAEQSVALS GGPSWTNLLG RRDSRTANRT LANENLPVPN NSLERLKDRF RNVGLNDNFD LVALSGAHTF GRAQCRTFSD RLFNFNNTGN PDPTLNTTLL  QQLRQLCPQG GNGSVLTNLD VTTPDVFDNK YFFNLQIHKG LLQSDQELFS TPGADTAAIV NNFGRNQTAF FVNFVTSMIR MGNLKPLTGN QGEIRLNCRR VNGNSNIATR SSSSEGDLIS 
SF* 

Retrieve as FASTA  
Remarks Partial sequence from genomic. Incorrect prediction from phytozome (5' end is missing).
DNA
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.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGAAAGCTG CCGTTGAAAG GGCCTGTCCA GGCGTTGTTT CCTGTGCTGA TATTCTTACT ATTGCAGCTG AACAATCTGT TGCTCTGTCA GGGGGTCCTT CATGGACAAA TCTATTGGGA  AGAAGAGACA GCAGAACAGC AAACAGGACT CTTGCAAATG AAAATCTTCC AGTACCGAAC AATAGTCTTG AGAGGCTCAA AGATAGATTC AGAAATGTTG GCCTCAACGA TAATTTTGAT  CTTGTTGCAC TCTCCGGAGC TCACACATTT GGAAGGGCTC AGTGCCGAAC TTTTAGCGAT AGATTATTCA ATTTCAACAA CACTGGCAAT CCAGACCCAA CACTTAACAC AACCCTCTTA  CAGCAACTTA GGCAACTATG CCCACAAGGT GGAAACGGCA GCGTTCTAAC TAATCTTGAT GTCACAACAC CTGATGTGTT TGACAACAAA TACTTCTTCA ATCTTCAAAT ACACAAGGGC  CTTCTGCAGA GTGATCAAGA GTTGTTTTCG ACTCCCGGTG CCGATACCGC TGCCATTGTC AATAACTTTG GCAGGAACCA GACTGCTTTC TTTGTAAACT TTGTGACTTC AATGATTAGA  ATGGGCAATT TGAAACCACT GACGGGAAAT CAAGGGGAGA TTAGATTGAA CTGCAGGAGG GTCAACGGAA ACAGCAATAT CGCAACAAGA TCATCATCAT CGGAGGGTGA TTTGATCAGC 
TCTTTCTGA 

Retrieve as FASTA  
CDS
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGAAAGCTG CCGTTGAAAG GGCCTGTCCA GGCGTTGTTT CCTGTGCTGA TATTCTTACT ATTGCAGCTG AACAATCTGT TGCTCTGTCA GGGGGTCCTT CATGGACAAA TCTATTGGGA  AGAAGAGACA GCAGAACAGC AAACAGGACT CTTGCAAATG AAAATCTTCC AGTACCGAAC AATAGTCTTG AGAGGCTCAA AGATAGATTC AGAAATGTTG GCCTCAACGA TAATTTTGAT  CTTGTTGCAC TCTCCGGAGC TCACACATTT GGAAGGGCTC AGTGCCGAAC TTTTAGCGAT AGATTATTCA ATTTCAACAA CACTGGCAAT CCAGACCCAA CACTTAACAC AACCCTCTTA  CAGCAACTTA GGCAACTATG CCCACAAGGT GGAAACGGCA GCGTTCTAAC TAATCTTGAT GTCACAACAC CTGATGTGTT TGACAACAAA TACTTCTTCA ATCTTCAAAT ACACAAGGGC  CTTCTGCAGA GTGATCAAGA GTTGTTTTCG ACTCCCGGTG CCGATACCGC TGCCATTGTC AATAACTTTG GCAGGAACCA GACTGCTTTC TTTGTAAACT TTGTGACTTC AATGATTAGA  ATGGGCAATT TGAAACCACT GACGGGAAAT CAAGGGGAGA TTAGATTGAA CTGCAGGAGG GTCAACGGAA ACAGCAATAT CGCAACAAGA TCATCATCAT CGGAGGGTGA TTTGATCAGC 
TCTTTCTGA 

Retrieve as FASTA