View Redoxidase 8727

Entry information : CclPrx98 (clementine0.9_030435m)

Entry ID	8727
Creation	2011-06-25 (Qiang Li)
Last sequence changes	2011-12-13 (Qiang Li)
Sequence status	complete
Reviewer	Not yet reviewed
Last annotation changes	2012-01-04 (Qiang LI)

Peroxidase information: CclPrx98 (clementine0.9_030435m)

Name (synonym)

CclPrx98 (clementine0.9_030435m)

Class

Class III peroxidase [Orthogroup: Prx022]

Taxonomy

Eukaryota Viridiplantae Streptophyta Rutaceae Citrus

Organism

Citrus clementina [TaxId: 85681 ]

Cellular localisation

N/D

Tissue type

N/D

Inducer

N/D

Repressor

N/D

Best BLASTp hits

Perox	score	E-value	CclPrx98 start..stop	S start..stop
CsPrx17	769	0	1..391	2..377
PpePrx04	474	1.61e-168	55..387	1..349
PpePrx50	473	3.81e-168	57..387	11..344
EgrPrx91	463	2.03e-163	4..391	8..399

Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '8727' 'complement(join(254674..255179,255291..255456,256776..256973,257694..257999))'

Exons►

Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size
N° 1	257694..257999	304	N° 2	256776..256973	196	N° 3	255291..255456	164	N° 4	254674..255179	504
complement(join(254674..255179,255291..255456,256776..256973,257694..257999))

Literature and cross-references CclPrx98 (clementine0.9_030435m)

DNA ref.	Phytozome 12: scaffold_111 (257999..254674)

Protein sequence: CclPrx98 (clementine0.9_030435m)

Sequence Properties
first value : protein
second value (mature protein)

Length (aa):	391 (371)
PWM (Da):	43383.53 (41074.2)
PI (pH):	6.51 (6.18)	Peptide Signal:	cut: 21 range:21-391

Sequence
Send to BLAST
Send to Peroxiscan

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

MGRWVYVVLVISLILSLRNPKRFDTQTITDDELTHPSLSIFLQRS
HFNISQGHELRLEYDYYRDKCPDAEKIVRSKMAQLYSQDKQVPANLLRLFFHDCFIMGCDASVFLDDSNGNESHPIERQAIPSQTLKGFDKINLIKEELEEACPGMVSCADALALATRDGILLAGGPYYPVFTGRRDSIKSYFQEATAEIPGPDDDLNKILHLFSLRGFSPRETVSL
IGAHNIGKISCQFIRNRLYDFLGTGQPDPTMSDDFLVEMRVLCGDGNQTSLHGSPAPASAPAPMRSSGMRESTLGMNYYQRLSTSISSGAGFDAHYYQNLLRGRGLLHADQQLMAEEKTA
KLVWAYASDCGTAYRTDFARVMLKMSNLGVLSGSQGQVRSNCSLSLNSS

Retrieve as FASTA

Remarks

Complete sequence from genomic. Incorrect prediction from phytozome (Short 5' end is missing).

DNA ►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

ATGGGTAGGTGGGTTTATGTTGTTCTTGTAATCTCTTTGATTCTGTCATTGAGAAACCCAAAGAGATTCGATACACAAACAATAACAGATGATGAGTTAACTCATCCAAGTTTATCCATT
TTCCTTCAAAGATCCCATTTCAATATAAGTCAAGGTCATGAACTTCGTCTTGAGTATGATTACTATAGAGACAAATGTCCTGATGCTGAAAAGATAGTGAGGTCAAAAATGGCCCAACTT
TACTCGCAGGATAAACAAGTTCCCGCAAATTTGTTGCGCCTATTCTTCCACGACTGCTTCATCATGGTATATCATTTTAATCTTTTGGTCACAATTCTTGGGTTTCTGTAGCTTTCTCTC
CAATGGCTTCTGTTCTTTTGCACTAAGTTGCTTTGCCGCTTCTTTTTCCGTATTCTTGTAAGGATTTTCTTCTCTTTGATCCTTTCTAATGATCTTCCTTTTCTAATCTTTTGCCTTTAG
TAGTTCTTTATGAGTATTAATTTCATCCCACTTGATCTTTTCTGGGTTTTTTCGTTTCCATGACTGCTCCATCATGGTGTATTCTTATCTTTTTCGATTCTTGGATTGATGTCAATTTAT
TTCCAATGGGTTCTGTTCTATTGATCATATTTTTGCTTTTCTCCCNNNNNNNNNNNNNNNNNNNNNCTTGTTGGCTTTTGTTCTGGGTTCTTGAAAGGGTTCTGTTCCCTTTGGTCTGCT
GTAATGTGCTTCTTTTTCCTTTTTCAATTTCTATAAATGAGCATTAAGTTTTCGATTCGAAATATTTTCCTAATTTCAGGTGGGTTTGTTCTTTTCTTATTGCTGAAATGGTTGATTACC
ATAATATTCTTTATAGTTTTTATTTGGTTGGGTTTCATCTTTTCTCAATTTCATGATGTTAGGCCTGAACAGACGTATTCATTGGTAAATTTTGCCTTCCATTTTGATTTTTTTAGTCCT
GAACTTTTGTTAGCTCATGATTTTGCTGTTAATTGTTTGTGTCGTTCTGGTGTTTCTTTGAACCAGGGGGCTGTGATGCTTCGGTGTTCTTAGATGATAGCAACGGCAATGAGAGCCATC
CAATAGAGAGGCAGGCGATTCCCAGCCAAACTCTCAAGGGCTTTGACAAAATTAATCTGATCAAGGAAGAGCTTGAAGAGGCTTGTCCAGGGATGGTTTCGTGTGCCGACGCACTAGCTC
TTGCCACCAGAGATGGCATCCTTTTGGTAAGCTTTAATTCTCAGCTATTACTTTGTGTCTGTTCCCCATCTCTCCCCCCCACCCCCCTTCCGCTTTTTTCCTCCTCTAATTNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNAATACAACCTGAAGATGCCTAAAAACATGTTGTTTGAATACTCCGTGGTTATGAACCCCGAACAGTGAAAGAGATTTTATAGCTTGCTTTTGGGTAGA
ATTTTTCTGTATACTTGGAAAGTTCTGGCAGTGACCTTTCCATTTCTTTGTGGAAGGATAATTAGTAATTCAAGAAGATGAATGCTCTCACGACATACTTTATATGTCTCTTTTATGTCT
TTGCTAAGGGTTTGGGACAACTCTGAAAACTGAAATCAGTAACTTAAATATTATTAAGGTATCTCAACTTTGGTATGGTCTTATTAGACAATTTAGAAAATTTTTAAGAATTCAATTATT
GGTATCTGGTTCAACTAGGCGCTAGCTGCTGTGATTGTTATGCTGCAGCTGCTGCTTTTAAATTTGCTGTTTACTATAATTGAAATGAAAAAACATTTGGTTCAACTTACACTTGTCGAA
TCCAAAAGGGGAAAACCTTTAAACTATTTTGAAGTACCGATTCTTCTTTATGTTGAACGATATTAATGGATTCTGTTGGACTAAATACCGTAGAAAATTTAAGCATATGCTAGACTTGAT
GTGGATCTGATGGGGCAATATCAGGACTCATAGGTTGATATGGCTATCAAGTGCTATAGGATCAGCATAACTTTTCCAGTGTGACTCTTACTTATTGCTGAACTTTTAACAGAAGTAGGC
TTCAAAACTGAAAAATATCATTATTACATAATATATGAAAACTCTTTGGAGATATCTATTGTGTTATTTTTCTTCAACTTCACTGGGTACTATCCTTTTAATTACTTGCAAATCACTTGA
TGTCCTATGATTCTGTTATTTGCAGGTTTCTTTCTTAAAATTCTTGTAATTTATTCTTCTCTCTCTCAATCTGTCTCACCCTTTTTCTTCAGCTGATTACAGCTCATATGATTCCATCGG
CATGGTTTCTGACCTTAGAATCAAATTCATCTCTGCCAAATGATTGAATAGTCGGTTAATTCTTTTGTTTTGAAAATTTTGAAAAAAGACTATATACATTTTCTTTCTTTTTACCTGTTA
GTAAGGTTTCCCTCAGTTTTTCTTGGTTATGTTGTCCTTTTTAAGTTTCATATTTCTCTTGATACCTATTTATGCTATTGGGTTAGCATATGCTTATTTTTCATTGTTATTTAAGCACTC
CAATGTTTGTGCAATGAAAGAACAGGCGCTGGTGGCCCATACTATCCAGTATTTACGGGCAGAAGAGACAGCATTAAATCGTACTTTCAGGAAGCTACTGCTGAGATACCAGGACCTGAT
GATGATCTTAACAAGATTCTTCACCTGTTCTCGCTCAGAGGTTTCAGTCCAAGAGAAACAGTCAGTCTAATAGGTACTCTTTCTATGCTTCTTCCTCCATCTCTTGTGTATCATAAAGTA
AATTAATGCTAAAACATTCGAATTAGAATCATAATTTGAATTTGATATTTTTTGTTATCTGAAGGGGGGCTCATAACATTGGAAAAATCAGTTGTCAATTCATTAGAAACCGCCTCTATG
ACTTTTTGGGGACAGGTCAGCCAGATCCTACCATGTCTGATGATTTTTTAGTTGAAATGAGGGTTCTTTGTGGGGATGGCAACCAAACTAGTCTTCATGGCTCTCCTGCTCCTGCTTCTG
CGCCTGCTCCAATGAGATCTAGTGGAATGCGTGAGTCAACTCTAGGAATGAATTACTATCAGAGATTATCAACTTCCATCTCATCTGGGGCAGGTTTTGACGCACATTACTATCAGAATT
TGCTGAGAGGGAGAGGACTTCTCCATGCTGATCAGCAATTGATGGCTGAGGAGAAGACTGCAAAGCTGGTCTGGGCATATGCATCAGACTGTGGAACAGCCTACAGAACAGACTTTGCCA
GGGTTATGTTGAAGATGTCAAACCTTGGTGTCTTGTCCGGATCCCAAGGTCAGGTCCGATCAAACTGCTCCTTGTCACTTAACAGCTCTTAA

Retrieve as FASTA

CDS►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

Retrieve as FASTA