View Redoxidase 8738

Entry information : CpapPrx02 (evm.model.supercontig_1127.3)

Entry ID	8738
Creation	2011-06-28 (Qiang Li)
Last sequence changes	2012-01-05 (Qiang Li)
Sequence status	complete
Reviewer	Not yet reviewed
Last annotation changes	2011-11-30 (Qiang Li)

Peroxidase information: CpapPrx02 (evm.model.supercontig_1127.3)

Name (synonym)

CpapPrx02 (evm.model.supercontig_1127.3)

Class

Class III peroxidase [Orthogroup: Prx004]

Taxonomy

Eukaryota Viridiplantae Streptophyta Caricaceae Carica

Organism

Carica papaya [TaxId: 3649 ]

Cellular localisation

N/D

Tissue type

N/D

Inducer

N/D

Repressor

N/D

Best BLASTp hits

Perox	score	E-value	CpapPrx02 start..stop	S start..stop
CclPrx107	413	6.31e-146	1..331	1..326
CsPrx58	409	2.57e-144	1..331	1..326
NtPrx09-1B	407	2.21e-143	3..331	5..324
KfedPrx38	405	9.29e-143	21..331	22..329

Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '8738' 'join(16132..16314,16456..16479,16504..16710,16796..16961,17163..17577)'

Exons►

Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size
N° 1	16132..16314	181	N° 2	16456..16479	22	N° 3	16504..16710	205	N° 4	16796..16961	164
N° 5	17163..17577	413
join(16132..16314,16456..16479,16504..16710,16796..16961,17163..17577)

Literature and cross-references CpapPrx02 (evm.model.supercontig_1127.3)

DNA ref.	Phytozome 12: supercontig_1127 (16132..17577)

Protein sequence: CpapPrx02 (evm.model.supercontig_1127.3)

Sequence Properties
first value : protein
second value (mature protein)

Length (aa):	331 (306)
PWM (Da):	35339.8 (32516.1)
PI (pH):	5.34 (4.63)	Peptide Signal:	cut: 26 range:26-331

Sequence
Send to BLAST
Send to Peroxiscan

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

MSRFPIRKILYLLVSLTLLVASTHAQLSSTFYDTSCPNVTSIIRGVIQQARQSNVRTGAKLIDIYVYICFIQGCDGSVLLDSSPADGIVTEKNVFPNSNSLVGFEVVDAIKTAVENVCPG
VVSCADILAIASEVSVVLDGGPSWQVQLGRRDSRTTSPGDVTSSLPSSTEGLSAITSKFSALGLDTTDLVVLSGAHTFGRARCVTFQNRLFIFSGSGSPDSSIDPTFxTSLQQACPQDGS
NRQSLNNLDVTTPNNFDNNYFVNLQNNRGLLQTDQELFSTNGAPTIPIVNRFAGRQSDFFDSFTKSMIKMGNISPLTGNSGEIRADCKRIN

Retrieve as FASTA

Remarks

Complete sequence from genomic. Incorrect prediction from phytozome (Short PS was missing).

DNA ►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

ATGTCTAGGTTTCCAATTAGAAAAATTTTGTACCTTCTTGTTTCTTTGACATTGCTTGTAGCATCCACTCATGCTCAGCTTAGTTCTACTTTTTACGACACGAGTTGCCCTAATGTGACG
AGTATTATACGCGGAGTCATTCAACAAGCTCGACAGAGTAATGTTCGAACTGGCGCTAAACTTTTGTTCGACTTCACTTTCACGATTGCTTCGTTCAAGTAATTTACATATCTCTCTTCT
CTAAGTTCCAAAATATGCTTATATATCAGAATACATGTAGATCCCTATGTATATGGCACATATTCTAGCTACTTGTCTATTGACCGATTGATATATATGTATACATATGTGTACATATCT
CACTAATACATGTATTTTCATACAGGGGTGTGACGGATCAGTTCTACTTGATAGTTCACCTGCAGACGGCATAGTGACCGAGAAAAATGTATTTCCAAACTCGAACTCATTAGTTGGATT
CGAAGTTGTCGATGCCATTAAAACTGCGGTAGAGAATGTTTGTCCTGGCGTCGTTTCTTGTGCTGATATTTTGGCTATTGCATCCGAAGTTTCGGTCGTTTTGTGGTAATTTGATTAACT
AATTACTATATATATAATAAAAAATTTTAATTAATTATTAATAGAGATAATTAAATTATGAGATTTGCAGGATGGAGGACCATCATGGCAAGTGCAGCTGGGAAGAAGAGACAGCAGAAC
AACTAGTCCCGGAGATGTTACCAGCTCTCTTCCTTCTTCTACTGAAGGCCTTTCTGCTATCACTTCCAAATTCTCTGCTCTTGGACTTGATACAACCGATCTTGTTGTTTTATCTGTGGT
AANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAGTAAAAAATTCAACAATA
TCTTCACGTAAATTGAGAGTTATTTAAAATATTTACTGTTACGTCGTATAAAATTTTCAATAATTATGGACATTTACAGGTGCTCACACATTTGGACGGGCGAGATGTGTGACATTTCAA
AATCGGCTCTTTATTTTCAGTGGTTCGGGAAGTCCCGACTCGTCAATAGACCCGACATTCTANACTTCCTTACAGCAAGCATGCCCTCAGGATGGAAGCAATCGCCAATCACTCAACAAT
CTCGACGTGACAACTCCGAACAATTTCGATAACAACTACTTCGTCAACCTTCAGAACAATCGAGGACTTCTCCAAACCGATCAAGAGCTGTTTTCGACGAATGGGGCGCCTACGATCCCG
ATTGTCAACCGGTTTGCCGGCCGCCAGAGTGATTTTTTTGATAGCTTTACTAAGTCTATGATCAAGATGGGTAATATTAGTCCTTTGACAGGAAACAGTGGGGAGATTAGGGCTGATTGC
AAGAGGATTAATTG

Retrieve as FASTA

CDS►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

Retrieve as FASTA