RedOxiBase: View Perox 875

Entry information : SbPrx92 (Sobic.006G110700.1 [2.1] / Sb06g019280 [1.4])

Entry ID	875
Creation	2007-11-12 (Christophe Dunand)
Last sequence changes	2011-01-21 (Toky Ramarohetra)
Sequence status	complete
Reviewer	Messaoudi
Last annotation changes	2014-08-04 (Messaoudi)

Peroxidase information: SbPrx92 (Sobic.006G110700.1 [2.1] / Sb06g019280 [1.4])

Name (synonym)

SbPrx92 (Sobic.006G110700.1 [2.1] / Sb06g019280 [1.4])

Class

Class III peroxidase [Orthogroup: Prx003]

Taxonomy

Eukaryota Viridiplantae Streptophyta Monocotyledons Poaceae Sorghum

Organism

Sorghum bicolor [TaxId: 4558 ]

Cellular localisation

N/D

Tissue types

Callus
Cell culture
Seedlings

Inducer

Heat shock stress

Repressor

N/D

Best BLASTp hits

Perox	score	E-value	SbPrx92 start..stop	S start..stop
SiPrx52	538	0	36..345	33..336
ZmPrx111	491	3e-176	35..345	30..334
BdiPrx129	489	1e-175	36..345	30..333
OsPrx55	488	3e-175	38..344	35..335

Gene structure Fichier

Exons►

Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size
N° 1	48859328..48860365	1038
complement(join(48859328..48860365))

Literature and cross-references SbPrx92 (Sobic.006G110700.1 [2.1] / Sb06g019280 [1.4])

Literature	Cordonnier-Pratt,M.-M. et al., unpublished
DNA ref.	Phytozome 12: chromosome_6 (48860364..48859328)
Cluster/Prediction ref.	PlantGDB: SbGSStuc11-12-04.32299.1 UniGene: Sbi.2272

Protein sequence: SbPrx92 (Sobic.006G110700.1 [2.1] / Sb06g019280 [1.4])

Sequence Properties
first value : protein
second value (mature protein)

Length (aa):	345 (323)
PWM (Da):	36562.85 (34256.5)
PI (pH):	10.04 (9.90)	Peptide Signal:	cut: 23 range:23-345

Sequence
Send to BLAST
Send to Peroxiscan

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

MGAPLLRRRL LLSLALLAAC CAAVGTAAAA KAKAPRLSPN YYRHSCPRVQ RIVSDVIAAK QRANPSTAAG TLRLFFHDCF VNGCDASVLV SPLSSTAAPE RRREITLSLP GDAFDAVARA KAALESACPG VVSCADVLAL AARDLVGILG GPRFPVALGR RDSARSEARD VEGNLPRTNM SARAMVRLFA GKGLSAREMV ALAGAHTVGF SHCAEFAHRI YGYRGPGAAG AGAGHDPRLN
PEFARALQRS CAGYRTDPTV SIFNDIVTPS EFDEAYYKNL PHGLGLLASD AAIWEYPPTR VFAQRYSANR TAFFEDFAAA MQRLGAVGVK TGRQGVVRRR CDALD

Retrieve as FASTA

Remarks

Complete sequence from DNA (no intron) and 8 ESTs. 1 base is missing in phytozome version (cf ESTs).

DNA ►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

ATGGGCGCGC CGCTGCTCCG CCGCCGCCTC CTGCTGTCCC TCGCGCTCCT GGCCGCCTGC TGCGCCGCGG TGGGGACAGC GGCGGCGGCG AAAGCGAAAG CGCCCAGGCT GTCGCCCAAC TACTACCGCC ACAGCTGCCC GCGGGTGCAG CGGATCGTGT CGGACGTCAT CGCGGCGAAG CAGCGCGCCA ACCCGTCGAC GGCGGCGGGC ACGCTGCGGC TCTTCTTCCA CGACTGCTTC GTCAACGGCT GCGACGCCTC CGTGCTGGTC TCCCCGCTCT CCTCCACCGC GGCCCCGGAG CGCCGGCGGG AGATCACCCT CTCCCTGCCC GGGGACGCGT TCGACGCCGT GGCCCGCGCC AAGGCGGCGC TGGAGTCCGC CTGCCCCGGC GTGGTGTCCT GCGCCGACGT CCTGGCGCTG GCGGCGCGGG ACCTCGTGGG GATCCTTGGC GGGCCACGGT TCCCCGTCGC GCTGGGCCGC CGCGACTCCG CCCGCTCCGA GGCGCGCGAC GTGGAGGGCA ACCTGCCACG CACCAACATG TCGGCGCGCG CCATGGTGCG GCTCTTCGCG GGCAAGGGGC TCTCGGCCCG GGAGATGGTG GCGCTGGCCG GCGCCCACAC CGTGGGCTTC TCCCACTGCG CCGAGTTCGC GCACCGCATC TACGGATACC GGGGCCCGGG CGCCGCCGGC GCCGGGGCCG GCCACGACCC GCGGCTCAAC CCGGAGTTCG CCCGCGCGCT GCAGCGCTCC TGCGCGGGGT ACCGGACCGA CCCCACCGTC TCCATCTTCA ACGACATCGT CACGCCCAGT GAGTTCGACG AGGCATACTA CAAGAACCTG CCCCACGGGC TGGGCCTGCT CGCCTCCGAC GCCGCCATCT GGGAGTACCC GCCCACCAGG GTGTTCGCGC AGCGGTACTC CGCCAACCGC ACCGCCTTCT TCGAGGACTT CGCCGCCGCC
ATGCAGAGGC TCGGCGCCGT CGGCGTCAAG ACCGGGCGCC AGGGCGTCGT CAGACGCCGC TGCGACGCGC TCGACTGA

Retrieve as FASTA

CDS►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

Retrieve as FASTA