View Redoxidase 8792

Entry information : CpapPrx[P]24 (evm.model.supercontig_2.329)

Entry ID	8792
Creation	2011-06-28 (Qiang Li)
Last sequence changes	2012-01-05 (Christophe Dunand)
Sequence status	theoretical translation / pseudogene
Reviewer	Not yet reviewed
Last annotation changes	2011-11-30 (Qiang Li)

Peroxidase information: CpapPrx[P]24 (evm.model.supercontig_2.329)

Name (synonym)

CpapPrx[P]24 (evm.model.supercontig_2.329)

Class

Class III peroxidase [Orthogroup: Prx008]*

Taxonomy

Eukaryota Viridiplantae Streptophyta Caricaceae Carica

Organism

Carica papaya [TaxId: 3649 ]

Cellular localisation

N/D

Tissue type

N/D

Inducer

N/D

Repressor

N/D

Best BLASTp hits

Perox	score	E-value	CpapPrx[P]24 start..stop	S start..stop
CpapPrx25	280	4.68e-95	8..176	10..197
PpePrx20	219	2.91e-71	5..176	6..193
CclPrx07	216	2.72e-70	7..176	4..192
CsPrx15	216	2.8e-70	7..176	4..192

Gene structure Fichier

Exons►

Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size
N° 1	3809961..3810189	227	N° 2	3809321..3809453	131	N° 3	3809042..3809206	163	N° 4	3808740..3808888	147
complement(join(3808740..3808888,3809042..3809206,3809321..3809453,3809961..3810 189))

Literature and cross-references CpapPrx[P]24 (evm.model.supercontig_2.329)

DNA ref.	Phytozome 12: supercontig_2 (3810189..3808740)

Protein sequence: CpapPrx[P]24 (evm.model.supercontig_2.329)

Sequence Properties
first value : protein
second value (mature protein)

Length (aa):	226 (197)
PWM (Da):	24471.97 (21339.3)	Transmb domain:	o10-32i
PI (pH):	10.56 (10.31)	Peptide Signal:	cut: 30 range:30-226

Sequence
Send to BLAST
Send to Peroxiscan

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

MASPSSSLRPIILIVMLTFLVLFMGTSRAQLSKNFCAKTCPQALAAxxLKSVVRAAVAKELRMGASLLRMHFHDCFVNPNNNSLRGFEVVDAIKTKVEKLCPGMVSCANILTIAACDSVE
FVRGPSWTVKLRRRDAMTTSLAAANSGVVPPPTATLDQLITRFRAQGLSARDLIALPVNERSRLKAENEGSDVEHAGMKDKWTTEIKRCLLLRTAVKRQVLKYCLF

Retrieve as FASTA

Remarks

Pseudogene from genomic. Incorrect prediction from phytozome (frame shift in exon 1; No DAS; 3' end is missing).
complement(join(3808740..3808888,3809042..3809206,3809321..3809453,3809961..3810189))

DNA ►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

TTCTCCTTCTTCTTCTCTTAGACCCATTATTTTAATTGTAATGTTAACGTTTCTTGTACTCTTCATGGGCACCTCCCGTGCTCAGCTCTCTAAAAACTTCTGCGCTAAAACTTGCCCCCA
AGCCCTCGCCGCCGNNNNNTTAAAGTCTGTAGTTCGAGCTGCCGTCGCCAAAGAGCTCCGAATGGGCGCCTCTCTTCTTCGCATGCACTTTCACGACTGTTTTGTCAATGTAAATATTCT
TCTCTCTTTCTATCTCTCTCTCTATATATATATATATTATATAAATGAAATATGTGTATGCTTTTCGATTATAATTTTGGCAGCTTTACTTCTCAGTCTTGGGATATTGCACATGTGATA
TATGTGTCGTTGATAAACTTGTTGATATATATGATGTATAAAAGTATGGAGAAAGCCAGTGTCATTATGGCCATCCAGGATATCTATCTACTTCAATTATTAGACGACTCTGTGGTTCCC
ATATGATTGAAGATTATGTGCCATTAGTACAGTGTTCATTCAAGGGCCAAAAGCAATATGAACGACACTTGTCCATTCACAGTATTTTTTAACTGATATATAAGAAACCCAAATCAAACA
AAATCCAATAAATGTCCGTGTGCATTATATATATCACGTCAACTTCTATTTTATTTTCCTGCTTACTTTTTTCCCTTTTTTTATTTAGATAAAATGAGGTCATAAACACATGAACTCATT
ATCATAAACTGGACTTCCCCTAATAACAATTCTTTAAGAGGATTTGAAGTTGTTGATGCTATCAAAACAAAGGTGGAGAAATTGTGTCCTGGAATGGTTTCATGTGCTAATATTTTAACT
ATAGCAGCTTGTGATTCTGTTGAATTTGTAAGTACATCTCTACTAATCTTACTTAAATAAATTTTTTACTTCTAGTTAGATTTTAGTTTTCAATAAAATAAATTTATTTGTTAATGATTA
ATTCTTAATTTATGTTGTAACTTAGGAGAGGACCTAGTTGGACAGTTAAATTAAGAAGAAGGGATGCTATGACAACTAGCCTTGCAGCTGCTAATAGTGGTGTCGTTCCTCCTCCAACAG
CTACACTTGACCAACTTATCACAAGATTCCGAGCTCAAGGTCTCTCTGCTAGAGACTTGATTGCATTACCTGGTATAATTTTTTTGACTTTTTAAAGTTTATACAATATATATATATATA
TATTTAAGATTTAACTCAATAAATACTTAATGATATATATTTACATGTGTGTTGTAGGTGGACATACCGTAAAAGATTGAAAATATTCTTGTTAGGGTTTTGAAGTGTGAATGAACGGTC
AAGATTGAAAGCAGAAAATGAAGGGTCAGATGTAGAGCACGCTGGGATGAAGGACAAGTGGACCACGGAAATTAAAAGATGCCTTCTGTTGAGAACAGCTGTAAAAAGGCAGGTTCTGAA
ATATTGTTTGTTTTAG

Retrieve as FASTA

CDS►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

Retrieve as FASTA