RedOxiBase: View Perox 8795

Entry information : CclAPx-R (clementine0.9_015206m)

Entry ID	8795
Creation	2011-06-25 (Qiang Li)
Last sequence changes	2011-10-03 (Qiang Li)
Sequence status	complete
Reviewer	Qiang Li
Last annotation changes	2012-01-04 (Qiang LI)

Peroxidase information: CclAPx-R (clementine0.9_015206m)

Name (synonym)

CclAPx-R (clementine0.9_015206m)

Class

Ascorbate peroxidase related [Orthogroup: APx-R001]

Taxonomy

Eukaryota Viridiplantae Streptophyta Rutaceae Citrus

Organism

Citrus clementina [TaxId: 85681 ]

Cellular localisation

N/D

Tissue type

N/D

Inducer

N/D

Repressor

N/D

Best BLASTp hits

Perox	score	E-value	CclAPx-R start..stop	S start..stop
CsAPx-R	684	0	1..335	1..335
PtAPx-R	471	1e-168	27..335	27..337
GhAPx-R	468	3e-167	25..334	23..333
GrAPx-R	466	2e-166	25..335	23..334

Gene structure Fichier

Exons►

Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size
N° 1	387815..387992	178	N° 2	388079..388193	115	N° 3	388900..389027	128	N° 4	389104..389174	71
N° 5	389328..389370	43	N° 6	389456..389552	97	N° 7	389780..389863	84	N° 8	390151..390272	122
N° 9	390476..390542	67	N° 10	390738..390840	103
join(387815..387992,388079..388193,388900..389027,389104..389174,389328..389370, 389456..389552,389780..389863,390151..390272,390476..390542,390738..390840)

Literature and cross-references CclAPx-R (clementine0.9_015206m)

DNA ref.	Phytozome 12: scaffold_82 (387815..390840)

Protein sequence: CclAPx-R (clementine0.9_015206m)

Sequence Properties
first value : protein
second value (mature protein)

Length (aa):	335
PWM (Da):	36424.43
PI (pH):	8.96

Sequence 572
Send to BLAST
Send to Peroxiscan

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

MRSSTASSLCGCSTAYYSSPLLAPKFKFKFPAKSQRPSLSTVEFRANPLTISSSLVNHRGKDGSCNSNRRRRGLLLTATLPFLLPLHEFVQDLGAKAESGMSDYLLMKEEVTKVVSKGKAASVLRLAFHDAGTFEMDDNGGMNGSIVYELERPENAGLKKPLILEKAKGDVNAIRPVSWADMIALGGAVAVSVCGGPNIPVPMGRLDSMEPDPEGKLPQETLDASGLKQCFQRKGFSAQELVALSGAHTLGTKGFGNPIVFDNSYYKILLEKPWQSAGMSSMIGLPSDRALVEDDECLRWIKMYADNQNMFFEDFKNAYVKLVNSGARWRSL

Retrieve as FASTA

Remarks

Complete sequence from genomic. No EST.

DNA ►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

ATGCGTTCATCAACTGCCTCCAGCCTCTGCGGCTGCTCCACCGCTTACTACTCTTCCCCTCTCCTCGCTCCCAAATTTAAATTCAAGTTTCCCGCCAAATCACAACGGCCCTCTCTCTCA
ACGGTCGAATTTCGCGCCAATCCCCTCACAATTTCTTCCTCCTTAGTCAACCACCGAGGTTCCAGTGACTGACCATAAAACTGATTCTTGTGATTAGTTCTTGATTTATGTATTTTAACT
CTCTACATATGTTTAAATTTACAGGGAAAGATGGATCTTGCAATTCGAATAGGAGGAGGAGAGGACTGTTGCTTACGGCTACACTTCCATTTCTTCTTCCTCTCCACGAATTTGTGCAAG
ACCTGGGCGCAAAAGCTGAGTAAGTTGATTTTTTCTTTTTTTCTTTTTTTCCAAAAGCTGTAATTGTCTGATTTTGGATGCAACTTTCATTTTGTTCATTTAAGATTGTAATTAAATCAT
CTAATTGGATATAATTGAATAGCATACGTCTCTCCAATATTGTCATGTTTCATACATGAGCTTTGTTTTCATATACGATATTGCCATGCTTCAAAAGTTGGCGCACAACTTTTTTCTTTT
TCCTCACCTAATGTCGCGTATGACATGACATTGTTAGTTGTTACAATTTGCTTGGTCTTATGTGATCATTTTATCTTACCATCTCACCGATACATGGTGAATTGTTTGATTTTGATGGCC
ATATGTATGTGAAATCATTTGAGATACTATATTTGTATGCCAACTTTGTAAGTGTAGCATTACTCACATACAAGCCTTCAATAGTGCCCGTGTCCTAAAGCTTGGATAAAAGGTTTAATC
CACATATTTTGCTAAACAGAATTACTAGTTAACAAATATAATACAGAGAGTGTGGGTTGCTAAACATTATCTTCCAAGTAAAAGTTTAGTGGCTTTTGGAGGCCAGTAGTTACAAACATA
TCCCCATTTGAGTTCTGAGGTAACTGGCCAAGTGTTAATAGTTTCTCTGTGTTGATTGACTAGATCCTGCAAATTTTTTTTCCGTTTTTCTGATTATTTTTCAATTTCCTTTACTGACAC
CACAGGTCAGGTATGAGTGACTATCTGCTTATGAAAGAAGAAGTGACTAAGGTAGTTTCAAAAGGCAAGGCTGCTAGTGTACTTCGTCTTGCATTTCATGATGCAGGGACCTTTGAAATG
GATGATAATTCGGGTAAGTTTTAGGATATTATGATTGGTCTTCCTCAGTTTCCTATAAAATTTATCATGTCTTCTTGTCATTAGTGCAGGTGGTATGAACGGTTCTATAGTTTATGAACT
GGAAAGACCTGAAAATGCAGGCCTGAAAAAGCCTTTGAAGGCATGCTCTGTTTCCTTTGTTTTGTTATTGTTTTGATATATGTACTTTGTTTTCTAATTATCCATCCCTTAGATTCCTTG
AACATAAGTCCAAACAAATTAACTCTTATGTCGCTCTACCAGCTAACCCTTTACTGGATCCATTGTTGTTTAGATTCTAGAGAAAGCAAAGGGTGACGTGAATGCAATACGGCCAGGTTT
GTCCATCTGAAATTCTGCTGTTGAATCTCTGATAGCTACGTATGCTATGGTGCTAAGATGTGTGAATCTTGCATTGTTTAGTGTCATGGGCAGATATGATCGCTTTGGGTGGAGCTGTAG
CAGTTTCAGTTTGCGGAGGTCCAAACATCCCAGTTCCTATGGGCAGACTTGATTCAATGTAAGTAGCTAGCTTTCCACTAAGATTAATAACTTTAAATAGAATCAATTAGGCAAACAAAG
ATTATTTACCAGAGGGATCCTCAAATGTGCAATTTCATCAATATTAAATCCTATGTGCTTCAGTGCTGATTCATTTGGAAAATTGATCAAATATCATATCATTTCATACGATAACTATCC
GAGCCTTCACTGTTTTTGCTTTTAATAAGGGATTTTTCTTCATAGGGAGCCTGATCCCGAAGGAAAACTTCCGCAAGAAACTTTGGATGCTTCTGGTTTGAAGCAATGCTTTCAAAGAAA
AGGCTTCTCGTGAGTTTATACCAGCAGACATATTTTTTATCCATATTTTCTTCTCTAATTAAATTCAGTAATCTGTTGAGTGAATTCCTTATAAAACTAAAATCTAGCTGGCCATTTTTA
TCATTTTTTTTAAATTATGAAAATCAGTAATATGCATGCTTATAAGGCATTTAGCCACAATGTAGTTGGTACTACATTCATGTTGTTGGAAAAGCATTAACATACAGTAATTCCAATTCA
GGAACATCTGGATTGAGGAAAACCATGGCNNNNNNNNNNNNNNNNNNNNNNNNCAGAGCACAAGAGCTAGTTGCTTTATCTGGAGCCCATACTCTTGGAACCAAAGGTTTTGGAAATCCA
ATAGTTTTCGACAATTCGTACTATAAAATTCTTTTAGAGAAGCCATGGCAGTCTTCAGGTGAATAGCCTCTCACACAGAACTCATTATGTTCTCTCCTGTGCATTTAATAAAGAATCTTA
TGTTTGTTTGAATTTCCGAATTTGGATAGTAACTTTTTGATGCAACCCTTGCAAAAAGAAAGTCTAGATGACCCAGTTATTGTTTCTTGATTAGTTTTTCTTTTCTCATCAATTGATTCT
TTTCTTTGCTTTTGCTTGTAGCTGGTATGTCAAGCATGATTGGACTTCCTTCAGATCGTGCACTTGTTGAGGATGATGAATGTTTGAGGTTTGTCATCTTCGAAGAGCCTCTTAAAACTT
ACCTGAATTCTATCAACTTCTTTTAAATGACTCTTAAGTGGTCATTAATTAGGAGATACTTTTAGAAATGAGATGTTGGGAACTGAAAACAATAAAAAATTTGTTAATAATCAACAATTA
CATACAAAATTTTCTTATCTTTGATGCTTAAACTAATGCGCAGATGGATCAAGATGTATGCCGACAATCAGAATATGTTCTTTGAAGACTTCAAGAATGCTTACGTTAAACTAGTGAACT
CCGGAGCAAGGTGGAGAAGCTTGTGA

Retrieve as FASTA

CDS►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

Retrieve as FASTA