Entry information : SbPrx62 (Sobic.003G152100.1 [2.1] / SB03G013210 [1.4])
Entry ID 886
Creation 2006-01-03 (Christophe Dunand)
Last sequence changes 2006-01-03 (Christophe Dunand)
Sequence status complete
Reviewer Messaoudi
Last annotation changes 2014-08-04 (Messaoudi)
Peroxidase information: SbPrx62 (Sobic.003G152100.1 [2.1] / SB03G013210 [1.4])
Name (synonym) SbPrx62 (Sobic.003G152100.1 [2.1] / SB03G013210 [1.4])
Class Class III peroxidase    [Orthogroup: Prx084]
Taxonomy Eukaryota Viridiplantae Streptophyta Monocotyledons Poaceae Sorghum
Organism Sorghum bicolor    [TaxId: 4558 ]
Cellular localisation N/D
Tissue types Leaves
Ovaries
Roots
Inducers Acid treatment
Alkaline treatment
Dark growth
Drought
Light growth
Oxidative stress
Repressor N/D
Best BLASTp hits
Perox score E-value SbPrx62
start..stop
S start..stop
ZmPrx49 614 0 6..357 1..355
BdiPrx66 517 0 6..357 1..355
TaPrx46 490 2e-175 9..348 3..344
TmPrx08 489 6e-175 9..348 3..344
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 16173165..16173404 240 N° 2 16176657..16177490 834  
join(16173165..16173404,16176657..16177490)


exon

Literature and cross-references SbPrx62 (Sobic.003G152100.1 [2.1] / SB03G013210 [1.4])
Literature Cordonnier-Pratt,M.-M. et al., unpublished
DNA ref. Phytozome 12:   chromosome_3 (16173165..16177490)
Cluster/Prediction ref. PlantGDB:   SbGSStuc11-12-04.30474.1
Protein sequence: SbPrx62 (Sobic.003G152100.1 [2.1] / SB03G013210 [1.4])
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   357 (324)
PWM (Da):   %s   37603.93 (34409.4) Transmb domain:   %s   i7-29o
PI (pH):   %s   6.35 (6.03) Peptide Signal:   %s   cut: 34 range:34-357
Sequence 398
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MAGERMSTSSGGFAGLVACVATVCLLLPTGSRAQLKVGFYNTTCPNAEALVRQVVTAAFANNSGVAPGLIRLHFHDCFVRGCDASVLLSVNPAGGNTERQSRANNPSLRGFDVIDAAKAAVERSCPRTVSCADIVAFAARDSVNLTGKLFYQVPAGRRDGRVSNETEADTNLLGPDSTAQVLIDGFRRKNLTVEDMVVLSGSHTIGRSHCASFLATNRRRLADGTISAAYQALLEALCPPSPGQFDPNTTEIDVSTPAVLDNNYYKLLPLNLGLHFSDDQLIRNATLAPLANAFAADETLWKQKFAAAMVKMGNIDVKTGTTDEIRLNCSVVNPSSSSAAAAGVIEMLFPADEVATS

Retrieve as FASTA  
Remarks Complete sequence from genomic (chromo 3, intron 1) and 17 ESTs (TC102790, 5'is missing) and from 12 EST (TC102791,sequence between FDN and Stop is missing, stop at position 283).
DNA
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
TGGCGGGAGAGAGGATGAGCACTAGCAGCGGCGGCTTTGCCGGCCTGGTGGCGTGCGTCGCCACCGTGTGCCTGCTGCTGCCGACGGGGAGCCGCGCCCAGCTCAAGGTGGGGTTCTACA
ACACCACCTGCCCCAACGCCGAGGCGCTCGTGCGTCAGGTCGTCACGGCTGCTTTCGCCAACAACTCCGGCGTCGCACCCGGCCTCATCCGCCTCCATTTCCATGACTGCTTTGTCAGG
G
TACGTACGTATATACACAATTAAACATGCATGCATGTAAGTGGTGTCTCGGCAGATCACACATGTGCAGTACATGTATAGACTCTACTTGATTTTTTTTCCACGTTTTTCATCTCTACTA
CTTCGTACTTCAGACGAGCTGGTTCACCCAATTCCATTGCCACGGTCGTTCAGTAGTTTTTAATCTAGCGAACAATCCGACAGCTAATGCATGCCGGTCGTCCATCCTTCTCCCACCACT
TCTCTTTCCCTCTGCTTTTGACATCATCATGAAAAAAATAAAATATTTATTTCAAATTACTATAACTTTTGAATGATGTATCTATTTTTAATTCCGTCTTCACCGGTGTGTTCAACGTGA
CAAGACGAACAAAACTAGACCCCACTTCTATATGTTTCGAGGATTTTTATTTTTCTAATAACAATTTATGTATATAAACTTATAACATATAAGTTATGTTGCTAACTTATTCTGCTAAAT
TATGCTGCTAACCTATTCTGCTAAGTTGTATCGTATAACTTCTGTTTATGTATAATAAATGTCATAACTTTCTATATGCACTAGTGTATTAGTTGTGCAACTTATGTACATAAGTTGTAT
TGTGTAACTTATGTCTCTCTCTATTCTAAATTATAAAATGTTTTGATATTTCTACATATATTGATTTTGTTATGTGTATACATATATAGTTGTGTCTAGATACATACTAAATTCAATTTA
GAAAAGTCAACGTGCCTTATAATTCGAAATAGTGGAAGTAAACTTATGTACATAAGTTATATACTATAACTTTTTGAGAACGACTAAGTTAGCAATGTTAAGTTATTTCTCGAACTTATG
TTGTCTAGAAGCACTTCTAAGTTAGTACTGTTAAGTTTATCGTGAAAGTTACGCTTTTTTTTAATTCCATTTTATAAGTTATGAGCACATGCTTCTTAAAAAAAATATATTAAAGGGCGG
GTGATCTAGGAAAAGAAAGTGAAAAGAGAATCGAATATCTAAAAAGAGAAAGAGAAACGATTCTTGTTCTGTCCAAAATAAAAAGTAATATATGCACTTTCCAAAAAAGGAAAGAAAATA
GTTGTCGGAAACTGACCGCTGCTTTTATTTTCACTGAACGTTTGTGAAATAGTGGTGTCGGCTTGTTCATGAGAGATGGAAATATATCTCTCATATAATAATATTCGTCCTGTGAACAAG
GAACCAAAAAGGAAATATAAGGTATAGCATGATCCAACAATAGTTGCGGTAAAACCAAACGTATTAATTTTGACCAATATATTGTAAAGTTAGACACATAAGAGGATGGGAATTCCAAAA
ATAATTTTCAACTGAAATCCTCTTGGTATACTCTGTCAGACCAAATATATACAAAAAATTATTAATATTTATAGTACATAATAAATATCGTTAGATTAATTGTTCATATTTTGACAGTAA
CCTTATTTGGAGATATAAATATTGCTAATGTTTTATATAACTGCCCATTTAGATCTTTATCATTCTGGAAAAATTATAATCTACTTTATGAACTAGGCTAGCTATTTGGCTAGCAAATTT
GATATTCCACAACTTTCAAAGTTTAAATATAAACCTGTGTTAAATTCGTGGGTGAAAGATAGAGATAGATATTTCGTCAATTATCATGCCCTGTTTCTGCTTTGCATCTTATACCAAGCA
GAAGTGCGGTGTATAAGTATCTCCCCTCTGTGGCCAACAACAACATACAAATATGTTCCACACGCAGTCATGCTAACTTAACTGATTCGTGCCTAAATTGTGATTATTGGAACGGATTTT
AATTCAAAAACTCAAATGAGACCTAATTCTTCTAGTTAAATTTAAGAAAGCTTGAATTATATACATAACCATAAACAGCATTTTTTGTGGTTTTTGGTATGGATGGCGTAGTGGTTGCGG
CTATTTATTTACAACCAAGTAAATATCTAAATTATTTAATTTGAACAATGGTGCAAAAACTCAAAAACGTTGGCCAATAACATATTTTCCTAAGGCCTTATTTAGATGTCCATGTGTTTA
TCTCAAATTTTCAACCCATGTGTGTTGAAATGGGTTTGTGGGAAATTTAAACTAAACTCTATATACCAACCCACCTCAACGCATACGTCTGAGATGAATACATAGATACCCAAACTAAGC
CCCTAACATGGTCTTCAACATATTGTGAGCCAGAGATTTTTACGTAAAACACTACCAAAATGGTAAAAATCTCCTAGTATTTTTAACTAGTAATAAAACACTATCATTAGTCATATCACA
TACGAATCTCACTAGGAGACATTTAGTAGGCAAATTTATACTAAATTTTGAATACCAAAACACTAGAAGAATCCCACGTTACTAGGAAAAATCTAAAATTATGGTTGTGAAAGTTCCATC
AATAATAATAATTTAGTCTGTTCGATCAGTGTAGGTAACAGATAAGGGTTGTTTGTCTCTATCATAAAAATAATCCAAACAAAACTCTAAGCTTCACGGAACACGTGCACATGTCTTGGT
TATCGTTCTCAAACTTTCCTCTCTTGAATAATAGATAGTTCAACAGCAACGAAAGCTCAGTTTGGATCTTGGCAGCATATGCTCCCTCAACTCTTGAATTATATTCTTCATGGATATATA
TGACATAAACCGTTGAATTATTTTGGAAGAACAAGTCAATTGGTCGTTGGTACACACATAGTACATGAGTACAACCACCACCTAGATAGACCGGCCTGTACTAGCAATATATTGATGCCG
TCCAACAGGTACTATATACTACAATTACGTAGGAGTACTAGTTAAGATTGGTATTAGGCCTTGTTTAGATGCACTAAAAAACCCAAAACTTTATAAGATTCTCCATCACATCGAATCTTA
CGGCACTTGCATGGAATATTAAATATAGATAAAAAAAATAACTAATTGCATAGTTTATCTGTAAATCACGATACGAATCTTTTCAGGCTAGTTACTCTATAATTGGACAATGTTTGTTAA
ATAAAAACGAAAGTGCTATAGTGTCAAAATCCAAAAAGTTTTTTATTAAAAAAGGCCTTATCCAACGCACTTGTGGTTTTATATACTGCCAGTCCAAGTCCAGAATGATCAGCGTTGAAG
CATACGCGTGTTATGTTGATGCTTGACAATTAATGTAATGCCACATTTACTAATCATGGTGAGGACTGAAACAGTGAAACCTAATTAAACTTTGGTGGTTGGCTTTTGATGACCCATCAT
TCCACACACAGGGCTGCGACGCCTCCGTCCTCCTATCCGTGAACCCCGCCGGCGGCAACACGGAGCGTCAGTCCCGGGCGAACAACCCGAGCCTGCGCGGCTTCGACGTGATCGACGCCG
CCAAGGCCGCCGTGGAGCGGAGCTGCCCGCGCACCGTCTCGTGCGCCGACATCGTCGCCTTCGCCGCCCGCGACAGCGTCAACCTGACGGGCAAGCTCTTCTACCAGGTGCCCGCGGGGC
GGCGGGACGGCCGCGTGTCCAACGAGACGGAGGCCGACACCAACCTGCTTGGCCCTGACAGCACGGCGCAGGTCCTCATCGACGGCTTCAGGAGGAAGAACCTCACCGTCGAGGACATGG
TGGTGCTGTCGGGCTCCCACACTATCGGCCGCTCCCACTGCGCCTCCTTCCTGGCCACCAACCGCCGCCGGCTGGCCGACGGGACCATCAGCGCGGCGTACCAGGCGCTGCTGGAGGCGC
TGTGCCCGCCCAGCCCCGGCCAGTTCGACCCAAACACGACGGAGATCGACGTCAGCACGCCGGCTGTGCTGGACAACAACTACTACAAGCTGCTGCCGCTCAACCTCGGCCTCCACTTCT
CCGACGACCAGCTCATCCGCAACGCCACGCTCGCGCCGCTCGCCAACGCCTTCGCCGCCGACGAGACGCTCTGGAAGCAGAAGTTCGCCGCCGCCATGGTCAAGATGGGCAACATCGACG
TCAAGACCGGCACCACGGATGAGATCCGCCTCAACTGCAGCGTCGTCAACCCGTCCTCGTCGTCGGCGGCCGCCGCCGGGGTGATCGAGATGCTGTTCCCGGCCGACGAGGTTGCCACGA
GCTGA

Retrieve as FASTA  
CDS
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
TGGCGGGAGAGAGGATGAGCACTAGCAGCGGCGGCTTTGCCGGCCTGGTGGCGTGCGTCGCCACCGTGTGCCTGCTGCTGCCGACGGGGAGCCGCGCCCAGCTCAAGGTGGGGTTCTACA
ACACCACCTGCCCCAACGCCGAGGCGCTCGTGCGTCAGGTCGTCACGGCTGCTTTCGCCAACAACTCCGGCGTCGCACCCGGCCTCATCCGCCTCCATTTCCATGACTGCTTTGTCAGG
G
GCTGCGACGCCTCCGTCCTCCTATCCGTGAACCCCGCCGGCGGCAACACGGAGCGTCAGTCCCGGGCGAACAACCCGAGCCTGCGCGGCTTCGACGTGATCGACGCCGCCAAGGCCGCCG
TGGAGCGGAGCTGCCCGCGCACCGTCTCGTGCGCCGACATCGTCGCCTTCGCCGCCCGCGACAGCGTCAACCTGACGGGCAAGCTCTTCTACCAGGTGCCCGCGGGGCGGCGGGACGGCC
GCGTGTCCAACGAGACGGAGGCCGACACCAACCTGCTTGGCCCTGACAGCACGGCGCAGGTCCTCATCGACGGCTTCAGGAGGAAGAACCTCACCGTCGAGGACATGGTGGTGCTGTCGG
GCTCCCACACTATCGGCCGCTCCCACTGCGCCTCCTTCCTGGCCACCAACCGCCGCCGGCTGGCCGACGGGACCATCAGCGCGGCGTACCAGGCGCTGCTGGAGGCGCTGTGCCCGCCCA
GCCCCGGCCAGTTCGACCCAAACACGACGGAGATCGACGTCAGCACGCCGGCTGTGCTGGACAACAACTACTACAAGCTGCTGCCGCTCAACCTCGGCCTCCACTTCTCCGACGACCAGC
TCATCCGCAACGCCACGCTCGCGCCGCTCGCCAACGCCTTCGCCGCCGACGAGACGCTCTGGAAGCAGAAGTTCGCCGCCGCCATGGTCAAGATGGGCAACATCGACGTCAAGACCGGCA
CCACGGATGAGATCCGCCTCAACTGCAGCGTCGTCAACCCGTCCTCGTCGTCGGCGGCCGCCGCCGGGGTGATCGAGATGCTGTTCCCGGCCGACGAGGTTGCCACGAGCTGA

Retrieve as FASTA