Entry information : CsaPrx[P]65 (Cucsa.204200.1)
Entry ID 8861
Creation 2011-06-29 (Qiang Li)
Last sequence changes 2011-10-03 (Qiang Li)
Sequence status theoretical translation / pseudogene
Reviewer Christophe Dunand
Last annotation changes 2015-11-18 (Christophe Dunand)
Peroxidase information: CsaPrx[P]65 (Cucsa.204200.1)
Name (synonym) CsaPrx[P]65 (Cucsa.204200.1)
Class Class III peroxidase    [Orthogroup: N/D] N/D
Taxonomy Eukaryota Viridiplantae Streptophyta Cucurbitaceae Cucumis
Organism Cucumis sativus    [TaxId: 3659 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value CsaPrx[P]65
start..stop
S start..stop
CpPrx01 179 3e-57 1..146 182..325
CsaPrx01 175 2e-55 1..146 186..329
CpapPrx02 173 1e-54 1..135 195..331
GmPrx71 173 2e-54 1..135 194..329
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 1068..1505 438  
complement(join(1068..1505))


exon

Literature and cross-references CsaPrx[P]65 (Cucsa.204200.1)
DNA ref. Phytozome 12:   scaffold01399 (1505..1068)
Protein sequence: CsaPrx[P]65 (Cucsa.204200.1)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   146
PWM (Da):   %s   15694.56  
PI (pH):   %s   4.43
Sequence
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Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
AHTFGRSRCV FFSGRLNNFN GTGSPDSTLD PTFRDALVIA CPTGDGNNRI ALDVATPDAF DNAYYTDLVT NRGLLQSDQE LFSTEGAETI EIVNRFAGNQ SDFFAQFGQS MINMGNIQPL 
VAPAGEIRTN CRRVNPTSTA AGTAVM* 

Retrieve as FASTA  
Remarks Partial sequence from genomic. Only last exon has been found two times in a small scaffold.
DNA
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.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
GCGCATACAT TTGGAAGGTC AAGATGCGTA TTCTTCAGTG GGAGGCTAAA CAACTTCAAT GGCACCGGAA GTCCAGACTC GACTCTTGAC CCTACATTTC GGGATGCATT GGTCATCGCT  TGTCCGACCG GCGATGGAAA CAACCGCATC GCACTGGACG TGGCGACACC GGATGCGTTC GACAATGCAT ATTACACTGA TTTGGTTACC AACCGTGGGC TTCTCCAATC GGATCAAGAG  CTGTTCTCAA CCGAAGGGGC AGAAACCATC GAGATCGTCA ACCGTTTTGC CGGGAACCAA TCTGATTTCT TCGCTCAGTT TGGTCAGTCA ATGATAAATA TGGGGAACAT TCAACCGTTA 
GTGGCACCGG CGGGAGAAAT CAGGACCAAT TGTAGGCGTG TTAATCCTAC TTCTACTGCT GCTGGTACTG CTGTTATG 

Retrieve as FASTA  
CDS
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
GCGCATACAT TTGGAAGGTC AAGATGCGTA TTCTTCAGTG GGAGGCTAAA CAACTTCAAT GGCACCGGAA GTCCAGACTC GACTCTTGAC CCTACATTTC GGGATGCATT GGTCATCGCT  TGTCCGACCG GCGATGGAAA CAACCGCATC GCACTGGACG TGGCGACACC GGATGCGTTC GACAATGCAT ATTACACTGA TTTGGTTACC AACCGTGGGC TTCTCCAATC GGATCAAGAG  CTGTTCTCAA CCGAAGGGGC AGAAACCATC GAGATCGTCA ACCGTTTTGC CGGGAACCAA TCTGATTTCT TCGCTCAGTT TGGTCAGTCA ATGATAAATA TGGGGAACAT TCAACCGTTA 
GTGGCACCGG CGGGAGAAAT CAGGACCAAT TGTAGGCGTG TTAATCCTAC TTCTACTGCT GCTGGTACTG CTGTTATG 

Retrieve as FASTA