Entry information : CsPrx30 (orange1.1g039585m/Cs5g04960)
Entry ID 8870
Creation 2011-07-01 (Qiang Li)
Last sequence changes 2014-03-11 (Catherine Mathe)
Sequence status complete
Reviewer Qiang Li
Last annotation changes 2017-12-14 (Qiang Li)
Peroxidase information: CsPrx30 (orange1.1g039585m/Cs5g04960)
Name (synonym) CsPrx30 (orange1.1g039585m/Cs5g04960)
Class Class III peroxidase    [Orthogroup: Prx002]
Taxonomy Eukaryota Viridiplantae Streptophyta Rutaceae Citrus
Organism Citrus sinensis    [TaxId: 2711 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value CsPrx30
start..stop
S start..stop
CclPrx12 817 0 1..406 1..406
VvPrx25 425 2.39e-149 95..404 15..323
RcPrx66 422 4.4e-148 98..404 18..323
CsaPrx30 416 1.56e-145 94..404 18..328
Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '8870' 'join(1382774..1383994)' Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 1382774..1383994 1219  
join(1382774..1383994)


exon

Literature and cross-references CsPrx30 (orange1.1g039585m/Cs5g04960)
DNA ref. Citrus sinensis Annotation Project:   chr5 (2947472..2948792) Phytozome 12:   scaffold00020 (1382774..1383991)
Protein sequence: CsPrx30 (orange1.1g039585m/Cs5g04960)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   406 (385)
PWM (Da):   %s   43578.13 (41331.9)  
PI (pH):   %s   9.21 (9.23) Peptide Signal:   %s   cut: 22 range:22-406
Sequence
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Send to Peroxiscan
*.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
MAVLPISVIF LAFISIPYSI ANPNSPNASP KPSPVASPKP SPRASPKPSP VASPKPSPLA SPKPSPVASP KPSPLASPKP SPAASPNPRP LASPMPSAKP ALRADYYKTT CPDFEKIVRE  FVHQKQTQSP STAAGALRVF MHDCFVDGCD GSVLISSNAF NVAERDSDIN LSLPGDAFDV VIKIKNALED ACPGVVSCAD ILTASTRNLV VMAGGPRFNV SFGRKDGLVS QAARIPGNLP  TNNMTMDEIL KMFASKGFSI QEYVALMGAH TIGFAHCKEF SDRLFKFAPN QPTDPELNPK YAEALKAACK NHEQNITMTA FNDVMSPGKF DNSYFRGLPR GLGLLRVDNM LVKDPRTKPL 
VDQYASNEVK FFADFAAAME KLSLLEVKTD PKDGNVRRRC DAFNDA 

Retrieve as FASTA  
Remarks Complete sequence from genomic. Incorrect prediction from phytozome (3'end missing).
Rem : contains a repeated sequence from 30 to 100. Similar prediction in Citrus clementina and confoirmed with ESTs.
DNA
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.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
ATGGCCGTGC TTCCTATCTC CGTTATCTTC CTTGCATTTA TCTCCATTCC CTACTCCATT GCCAATCCTA ATTCTCCCAA TGCCAGTCCC AAACCGAGTC CTGTAGCTAG TCCTAAGCCA  AGCCCTCGTG CTAGTCCCAA ACCAAGTCCT GTAGCTAGTC CTAAGCCAAG TCCTCTTGCT AGTCCCAAAC CAAGTCCTGT AGCTAGTCCT AAGCCAAGTC CTCTCGCTAG TCCGAAACCA  AGTCCTGCAG CTAGTCCTAA CCCAAGGCCC CTCGCTAGTC CCATGCCTTC TGCTAAGCCG GCCCTCCGCG CGGACTACTA TAAGACGACA TGCCCAGACT TTGAAAAGAT CGTCCGTGAG  TTCGTGCACC AGAAGCAAAC ACAGAGCCCC AGCACAGCTG CGGGTGCCCT CCGGGTTTTC ATGCACGACT GCTTTGTGGA CGGGTGCGAT GGGTCCGTCC TCATCTCGTC GAATGCATTC  AACGTGGCGG AGCGTGACAG TGACATCAAT CTTTCCCTAC CCGGCGACGC ATTTGATGTT GTCATCAAGA TAAAGAATGC CCTTGAGGAT GCCTGCCCTG GCGTGGTGTC ATGCGCTGAC  ATCTTAACCG CCTCCACTCG TAACCTGGTT GTTATGGCAG GGGGACCTCG TTTCAATGTG TCATTCGGCC GCAAGGATGG GCTTGTCTCT CAAGCGGCCA GGATCCCAGG GAATTTACCA  ACCAATAACA TGACAATGGA CGAAATTCTC AAAATGTTTG CAAGCAAGGG ATTCTCCATT CAGGAATATG TTGCATTGAT GGGTGCCCAC ACCATAGGTT TCGCTCACTG CAAGGAGTTT  TCTGACAGGC TCTTTAAATT CGCCCCGAAT CAGCCAACAG ACCCTGAATT GAACCCAAAG TATGCCGAGG CTTTGAAAGC CGCCTGCAAA AATCACGAAC AAAACATCAC GATGACTGCT  TTCAACGATG TGATGTCACC TGGCAAGTTT GATAACTCTT ATTTCAGGGG TTTGCCCAGA GGCTTGGGGC TGTTGAGAGT AGATAATATG CTGGTCAAGG ATCCTAGGAC CAAGCCCCTG  GTGGATCAGT ATGCTAGCAA TGAGGTTAAA TTCTTCGCTG ATTTTGCTGC TGCTATGGAG AAACTTAGTC TTCTTGAAGT CAAGACTGAT CCCAAGGATG GAAACGTCAG ACGCCGCTGC 
GATGCTTTCA ATGATGCTTA A 

Retrieve as FASTA  
CDS
Send to BLAST
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
ATGGCCGTGC TTCCTATCTC CGTTATCTTC CTTGCATTTA TCTCCATTCC CTACTCCATT GCCAATCCTA ATTCTCCCAA TGCCAGTCCC AAACCGAGTC CTGTAGCTAG TCCTAAGCCA  AGCCCTCGTG CTAGTCCCAA ACCAAGTCCT GTAGCTAGTC CTAAGCCAAG TCCTCTTGCT AGTCCCAAAC CAAGTCCTGT AGCTAGTCCT AAGCCAAGTC CTCTCGCTAG TCCGAAACCA  AGTCCTGCAG CTAGTCCTAA CCCAAGGCCC CTCGCTAGTC CCATGCCTTC TGCTAAGCCG GCCCTCCGCG CGGACTACTA TAAGACGACA TGCCCAGACT TTGAAAAGAT CGTCCGTGAG  TTCGTGCACC AGAAGCAAAC ACAGAGCCCC AGCACAGCTG CGGGTGCCCT CCGGGTTTTC ATGCACGACT GCTTTGTGGA CGGGTGCGAT GGGTCCGTCC TCATCTCGTC GAATGCATTC  AACGTGGCGG AGCGTGACAG TGACATCAAT CTTTCCCTAC CCGGCGACGC ATTTGATGTT GTCATCAAGA TAAAGAATGC CCTTGAGGAT GCCTGCCCTG GCGTGGTGTC ATGCGCTGAC  ATCTTAACCG CCTCCACTCG TAACCTGGTT GTTATGGCAG GGGGACCTCG TTTCAATGTG TCATTCGGCC GCAAGGATGG GCTTGTCTCT CAAGCGGCCA GGATCCCAGG GAATTTACCA  ACCAATAACA TGACAATGGA CGAAATTCTC AAAATGTTTG CAAGCAAGGG ATTCTCCATT CAGGAATATG TTGCATTGAT GGGTGCCCAC ACCATAGGTT TCGCTCACTG CAAGGAGTTT  TCTGACAGGC TCTTTAAATT CGCCCCGAAT CAGCCAACAG ACCCTGAATT GAACCCAAAG TATGCCGAGG CTTTGAAAGC CGCCTGCAAA AATCACGAAC AAAACATCAC GATGACTGCT  TTCAACGATG TGATGTCACC TGGCAAGTTT GATAACTCTT ATTTCAGGGG TTTGCCCAGA GGCTTGGGGC TGTTGAGAGT AGATAATATG CTGGTCAAGG ATCCTAGGAC CAAGCCCCTG  GTGGATCAGT ATGCTAGCAA TGAGGTTAAA TTCTTCGCTG ATTTTGCTGC TGCTATGGAG AAACTTAGTC TTCTTGAAGT CAAGACTGAT CCCAAGGATG GAAACGTCAG ACGCCGCTGC 
GATGCTTTCA ATGATGCTTA A 

Retrieve as FASTA