View Redoxidase 888

Entry information : SbPrxQ (Sobic.010G072900.1 [2.1] / Sb10g006380 [1.4])

Entry ID	888
Creation	2008-10-23 (Christophe Dunand)
Last sequence changes	2011-01-18 (Toky Ramarohetra (Scipio))
Sequence status	complete
Reviewer	Messaoudi
Last annotation changes	2014-08-06 (Messaoudi)

Peroxidase information: SbPrxQ (Sobic.010G072900.1 [2.1] / Sb10g006380 [1.4])

Name (synonym)

SbPrxQ (Sobic.010G072900.1 [2.1] / Sb10g006380 [1.4])

Class

Atypical 2-Cysteine peroxiredoxin (type Q) [Orthogroup: PrxQ001]

Taxonomy

Eukaryota Viridiplantae Streptophyta Monocotyledons Poaceae Sorghum

Organism

Sorghum bicolor [TaxId: 4558 ]

Cellular localisation

N/D

Tissue type

Leaves

Inducers

Methyl jasmonate treatment
Wounding

Repressor

N/D

Best BLASTp hits

Perox	score	E-value	SbPrxQ start..stop	S start..stop
ZmPrxQ	356	4.56e-127	1..212	1..218
TaPrxQ	350	7.7e-125	1..212	1..217
OsPrxQ	330	5.27e-117	1..212	1..217
HaPrxQ01	297	8.03e-104	20..212	32..217

Gene structure Fichier

Exons►

Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size
N° 1	5863592..5863783	190	N° 2	5863868..5864005	136	N° 3	5864547..5864855	307
join(5863592..5863783,5863868..5864005,5864547..5864855)

Literature and cross-references SbPrxQ (Sobic.010G072900.1 [2.1] / Sb10g006380 [1.4])

Literature	Cordonnier-Pratt,M.-M. et al., unpublished
DNA ref.	Phytozome 12: chromosome_10 (5863592..5864855)
EST ref.	GenBank: CN147676.1 [3' end]

Protein sequence: SbPrxQ (Sobic.010G072900.1 [2.1] / Sb10g006380 [1.4])

Sequence Properties
first value : protein
second value (mature protein)

Length (aa):	212 (303)
PWM (Da):	22800.81 (31664.5)
PI (pH):	10.25 (4.15)	Peptide Signal:	cut: 26 range:26-328

Sequence
Send to BLAST
Send to Peroxiscan

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

MAFTPATACCKPSLALAPRAASSRAQAAALLCTPSTSAFRGLRAA
PAPPRWRRSAASTGIVCGKVSKGSVPPNFTLKDQNGKPVSLNKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDAASHKAFAQKYRLPFTLLSDEGNRVRKEWGVPADLFGTLPGRQTYVLDK
QGVVQYIYNNQFQPEKHIGETLKILQSL*

Retrieve as FASTA

Remarks

Complete sequence from genomic (chromo 10, 2 introns) and 1 EST. Cultivar="BTx623",

DNA ►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

ATGGCATTCACGCCCGCTACGGCCTGCTGCAAGCCTTCCCTGGCGCTGGCGCCGCGGGCGGCGTCGTCCCGCGCGCAGGCGGCGGCGCTCCTCTGCACGCCCTCCACCTCCGCGTTCCGC
GGCCTCCGGGCCGCGCCGGCCCCGCCGCGCTGGCGCCGCTCGGCGGCGTCCACGGGCATCGTCTGCGGCAAGAGGTACGTGGCCTCGTAGCCATAGCCCCCGCGGAAATGGTTTTTTGGC
TGTGATTGGTTGATTTGATAGTCGTGGTTTGGTTGCAGGTCAGCAAGGGCAGCGTGCCACCAAACTTCACCCTCAAGGACCAGAACGGGAAGCCCGTGTCGCTGAACAAGTTCAAGGGCA
AGCCCGTCGTCGTCTACTTCTACCCCGCCGACGAGACGCCCGGATGCACAAAGCAGAGGTCAGCTTCCTCCTTCCTGCGCAAATGCCTGAGCCGACACTTTACTGAAACGAACTCTGAAA
ACATGCATATGTTTTGTTGCCTCCAAGAAACAGCAAGAAACTCTGAAACCATGCGTCTGTTTTGTTTTGTTTTTTTGCCTCCAAAGAATAGCAAGAAGCTCTGAACCCATTCCAGTGCGG
CGAGTAATGCAGCGTAGTACTCGTATAATCATTTGTTTTGTTGCAAAGGCAAAAGCTTGTCAATTTGTAGAATGGAAGCAACCAATGGAAGATTGACCCAAAAGTAGCTGCATCTGAAAA
GGCAGCTTGTGGTTTCCATCCCTTTAGTTGACTTTTGACCTTTATTATATAGAAGAAGAAAAAGCTCAAAAGCAGCTCCCAAAAGCCCAGCCAAAATCACTCCTGAAACCGATGTATGCA
AAGTCGGCAAATTGCCTGAAATCAGCGTGTGTCTGTCTGTATCTGACCTCCACCACCACCACCAATCCTCTAATCTGCGCTAGTTGGTGCATGCAACACAATGCGAATGCGAATTGCAGG
CGTGCGCGTTCAGGGACTCGTACGAGAAGTTCAAGAAGGCCGGGGCGGAGGTGATCGGCATCAGCGGCGACGACGCGGCGTCGCACAAGGCGTTCGCGCAGAAGTACCGGCTGCCGTTCA
CGCTGCTGAGCGACGAAGGGAACCGCGTGCGCAAGGAGTGGGGCGTCCCCGCCGACCTGTTCGGGACGCTCCCGGGGCGGCAGACGTACGTGCTGGACAAGCAGGGCGTCGTGCAGTACA
TCTACAACAACCAGTTCCAGCCCGAGAAGCACATCGGCGAGACGCTCAAGATCCTGCAGAGCCTCTGA

Retrieve as FASTA

CDS►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

Retrieve as FASTA