Entry information : Sb2CysPrx (Sobic.004G168500.1 [2.1] / Sb04g021990 [1.4])
Entry ID 897
Creation 2008-10-22 (Christophe Dunand)
Last sequence changes 2011-08-12 (Christophe Dunand)
Sequence status complete
Reviewer Messaoudi
Last annotation changes 2014-08-04 (Messaoudi)
Peroxidase information: Sb2CysPrx (Sobic.004G168500.1 [2.1] / Sb04g021990 [1.4])
Name (synonym) Sb2CysPrx (Sobic.004G168500.1 [2.1] / Sb04g021990 [1.4])
Class Typical 2-Cysteine peroxiredoxin    [Orthogroup: 2CysPrx001]
Taxonomy Eukaryota Viridiplantae Streptophyta Monocotyledons Poaceae Sorghum
Organism Sorghum bicolor    [TaxId: 4558 ]
Cellular localisation N/D
Tissue types Callus
Seedlings
Inducers Nitrogen starvation
Salt stress
Repressor N/D
Best BLASTp hits
Perox score E-value Sb2CysPrx
start..stop
S start..stop
Zm2CysPrx02 520 0 1..260 1..260
Zm2CysPrx01 510 0 1..260 1..260
Ta2CysPrx 437 1e-157 1..260 1..258
Os2CysPrx01 429 3e-154 2..260 3..261
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 51207389..51207577 189 N° 2 51207688..51207762 75 N° 3 51207908..51207989 82 N° 4 51208079..51208158 80
N° 5 51209744..51209869 126 N° 6 51209986..51210099 114 N° 7 51210761..51210877 117  
join(51207389..51207577,51207688..51207762,51207908..51207989,51208079..51208158 ,51209744..51209869,51209986..51210099,51210761..51210877)


exon

Literature and cross-references Sb2CysPrx (Sobic.004G168500.1 [2.1] / Sb04g021990 [1.4])
Literature Cordonnier-Pratt,M.-M. et al., unpublished
DNA ref. Phytozome 12:   chromosome_4 (51207389..51210877)
Cluster/Prediction ref. UniGene:   Sbi.3994
Protein sequence: Sb2CysPrx (Sobic.004G168500.1 [2.1] / Sb04g021990 [1.4])
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   260
PWM (Da):   %s   27951.47  
PI (pH):   %s   6.54
Sequence 301
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MACSFAAATTVSSAPTPASRPLAAAPQSVSVARSAVATAARPLRLAASRSARATRLVARAGGVDDLPLVGNKAPDFEAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYEEFEKLNTEVLGVSIDSVFSHLAWVQTDRKSGGLGDLKYPLISDVTKSISKAFGVLIPSQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETMRTLQALQYVQENPDEVCPAGWKPGEKSMKPDPKGSKEYFAAI

Retrieve as FASTA  
Remarks Complete sequence from genomic (chromo 4, 6 introns) and 60 ESTs.
DNA
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
TGGCCTGCTCCTTCGCCGCCGCCACCACCGTCTCTTCCGCCCCCACCCCGGCCTCTAGGCCCCTCGCCGCTGCCCCGCAGTCCGTCTCCGTCGCCCGCTCCGCGGTCGCCACCGCCGCCA
GGCCGCTCCGCCTCGCCGCCTCCAGATCCGCGCGGGCCACCAGACTCGTCGCCCGCGCCGGCGGCGTC
GTAAGTTCTCTCGCGTCTTGCCTCGCCTTACCGTACTACGGGTTTGCTTCTC
ACCCCCTTCTTCTTTGCACTCACGGCTCTCGCCCTTGTGCCTCTGCTCTGCTCTGTAGGATGACTTGCCGCTGGTCGGGAACAAGGCTCCAGACTTCGAGGCCGAGGCTGTGTTCGACCA
GGAGTTCATCAAC
GTATGTGCACCTCTCTCTCTCCGCGCAATCTCGCGTGGTTTATGTATGCTGTGGCAGCAGAACTCTGAAATGTTTCGTCCTCTCAAATTGCTCCTAAGACCCTTTTA
TGTGGCTGGCGATGACATTGCTCTTTGTGCTTTTGCAGGTGAAGCTCTCTGATTACATTGGGAAGAAGTACGTCATTCTGTTCTTCTACCCCTTGGATTTCACCTTCGTCTGCCCGACCG
GTGAGGATAAAACATTAGCATTAGTATCAACAAGACACGTTTGGAGTGGGTCTACGAGATTCTGATAAACTAACGCCCGGTACTTGTAGAGATTACTGCCTTCAGTGATAGATACGAGGA
ATTCGAGAAGTTGAACACTGAGGTTCTTGGCGTCTCCATTGACAGTGTG
GTATGTTATAATGCCCTGGTATTCCATGATATGATAGCATCTGTCAGTATGAATCAGTCTGTCAATTGTTC
TTAAGGATAAGTGAGTGTAGTTGACATCTGATGCCTCCACTGTTCGTACGGGGATTGTTCTCTCATTTGTCATATTCGTAGTTAGCTGTTGAAGTACATTTCAGCTTTGATATGTGCTAG
CTCATAACTGAAATAGAAATATTATGGTTGAACTGCTCATATAATGAGAAATTCATGTGCTACTTCTAGGTTATCTTTGGAGCACAACTGCTGTACTTGTATGTATGGCTCTTGAGCAGT
CACATTATTTCTAAAATTAATTGTGGAAATTATGTTTATGTGGAGTTAGAGAAAAGTAGTTATACAAATACACAATATTCTATAACAGTAAGGTAGTCGCTGTGTAAGGGTGGGGCAGGG
GTTCAGGGGTTTTCTCGATCTGTGTGAGAAGATCTTCTTAAGCCGGAATACCCTGGGACTGTCTAGCCACCGTGGATTGAGTTATTTTTTTATAACAGTAAGGTAGTGTTTCCTTTACAC
TTGCCGGTTTCAATATTTGGCAAAGTAGTATGACCACACATTCTGCTTTTTTTTCTCATGGTGAAAGATACGTGCTGCGCATTATCAATGTAACTATTAATAGAAAAAACCATCTACATG
AACATAACAGCAATGACAGTAGGGATGAGAACAGTCGGAATGGTACTATAATACAGAATCTGAAAGCGGTTGGTGCCGGATTTTCCCCTTTTTATCAAAATAAGTAATGAAGAAAATGGT
TGTGATAAAATCACAAAATGTCAACTTTCATGTTTTGATAGAAACGGAAATGTTATGATAATACGGAAAACGATATACCTGCTTTCACCTCTTAGTGACACGTCACTATCCAATATTTAT
TTCCAGATTTTCTATTGGGACTAAGAACTCACATTGCACTTGAGGCCTTAAATTTAACCTTTGTTGGTCCAAAGAAAATCTCTTCTTAGCTTCATAATCTTATTAAATTGATCATTTCTG
TTCGCTAAAGTACTTTACAATTACAAATCTTTGGAGAACTGCATAGTCCCTCCATTTTTATTTTTTAAATATGCCCCATTGAGTTTTTACTATAATTTTGACCAACAATATTATTTAATT
ACTTAGATAAGTAAAGTGAAAACTAAATCAGTTCTAAAGTCAAATGTTTATAGAAGAGACAAATAGTCAAATAAATAAAAGAGTCAAAGGTTAAACAGAGGAGTACTATTAAAAATGCCC
TAATGACTTGTATATTTGAAGTCTTTATACAGCTATGCTTGTATTTGTTATTACTCCCTCTGTTCCAAATTATAGGTTGTCTTGGCTTTTCTAATATCTAGACATAGCCTATATCTAGGT
GCATAGCAAAAGCTATTTACCTAAAAAAACCAAAACGACCTATAATTTGGGACAGAGGGAATACCTTTTTATATCATTGAATGTATGTGGTCAAAAGTAGAAATCTTGACATAAATAGAT
CTTGGGTTTTGGTTACTGTGATTTCATCATAATCATAACTGTTGTTAATTGCTTTAGTGTTTGTTTGGATGCAGTTCTCCCACCTTGCATGGGTGCAGACAGACAGGAAGTCTGGTGGGC
TTGGCGATCTTAAATACCCACTTATTTCTGATGTCACCAAATCAATTTCAAAGGCCTTTGGTGTTCTGATCCCTAGCCAG
GTTTTTTTTTTCAACCACTGGATATTCTTCTCCAGATTCT
AACCCTGTGGAGTCCTTTTGTTTTCCGTATTATGTTTCTGTTTGTTGCTCTCTATATCTGAATGTTCTTTGGGCAGGGTATTGCTCTGAGAGGACTGTTCATCATTGACAAGGAGGGAGT
GATTCAGCACTCTACCATTAACAACCTTGCCATTGGTCGTAGTGTGGATGAGACCATGAGGACCCTTCAG
GTATGTTCTATGTTGGTCGTGCTACATTTCTGATAGGCAGTTGCTCTGGA
CTTCAGAAATAAGAAGTTTTCTGTGCTGTTACTTAAAACCTAAAGTAAAATGAATATGCCTTTTGTGTTCATGGTGTTTGTGATACACAACTTGAACAAGATTCAACACTGGTGTGCATT
TTACATGATGAATTGTTTGTCAACACTTGACAGTGCAATATAGTTCTCCATTTGCAGGGACAAAATAAACTGTTTCTAACCTTTAAATCATACTCTAATCCAAATGCTTTAAAATTACAG
AAGAATGACTGAAAATATGTACATTATTTATGTGACCTACTTTGGCATTAGTGTACAAGGCCATTTTACTATAGTACTATACTAAATATAACTGTCAAAGTACTACACATACCACTTTTC
ATAGGGCAAGATGCATCATAGCAAGCATATATGGAAACAAGTGAGGCTCTTGATATGGGATGACGTTATGTAGTTTCACAATGAAAAATAAGCATAATCCCATGATTACAATTGTGGTAC
ATCATTTGGGCATTTTGCTGAGCTGGTTTACGCCCTACCCAGTTACATAGCTGCTTTTGCCATTTTATACAGTCCACCGATAACAATCAGGAGAATATTGAAGTTGACATCTCATTTCAA
TGTTTCACCAGGCATTGCAGTACGTCCAGGAGAACCCAGACGAGGTGTGCCCGGCCGGCTGGAAGCCAGGGGAGAAGTCGATGAAGCCCGACCCCAAGGGAAGCAAAGAGTACTTCGCGG
CCATCTAG

Retrieve as FASTA  
CDS
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
TGGCCTGCTCCTTCGCCGCCGCCACCACCGTCTCTTCCGCCCCCACCCCGGCCTCTAGGCCCCTCGCCGCTGCCCCGCAGTCCGTCTCCGTCGCCCGCTCCGCGGTCGCCACCGCCGCCA
GGCCGCTCCGCCTCGCCGCCTCCAGATCCGCGCGGGCCACCAGACTCGTCGCCCGCGCCGGCGGCGTC
GATGACTTGCCGCTGGTCGGGAACAAGGCTCCAGACTTCGAGGCCGAGGCTG
TGTTCGACCAGGAGTTCATCAAC
GTGAAGCTCTCTGATTACATTGGGAAGAAGTACGTCATTCTGTTCTTCTACCCCTTGGATTTCACCTTCGTCTGCCCGACCGAGATTACTGCCTTCA
GTGATAGATACGAGGAATTCGAGAAGTTGAACACTGAGGTTCTTGGCGTCTCCATTGACAGTGTG
TTCTCCCACCTTGCATGGGTGCAGACAGACAGGAAGTCTGGTGGGCTTGGCGATC
TTAAATACCCACTTATTTCTGATGTCACCAAATCAATTTCAAAGGCCTTTGGTGTTCTGATCCCTAGCCAG
GGTATTGCTCTGAGAGGACTGTTCATCATTGACAAGGAGGGAGTGATTC
AGCACTCTACCATTAACAACCTTGCCATTGGTCGTAGTGTGGATGAGACCATGAGGACCCTTCAG
GCATTGCAGTACGTCCAGGAGAACCCAGACGAGGTGTGCCCGGCCGGCTGGAAGC
CAGGGGAGAAGTCGATGAAGCCCGACCCCAAGGGAAGCAAAGAGTACTTCGCGGCCATCTAG

Retrieve as FASTA  
cDNA
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
GCAGACACGT CCCTATTTAA AACCTCCTCG CTCACTCAGC CATAGCCATC CCCAACACCC CCGGAAAGGA AACCCATCAC ACCAAATCCC CAACCCCAAA CCCCCAATCC ACCCTCATCC  ACTCCGGGCG GCCATGGCCT GCTCCTTCGC CGCCGCCACC ACCGTCTCTT CCGCCCCCAC CCCGGCCTCT AGGCCCCTCG CCGCTGCCCC GCAGTCCGTC TCCGTCGCCC GCTCCGCGGT  CGCCACCGCC GCCAGGCCGC TCCGCCTCGC CGCCTCCAGA TCCGCGCGGG CCACCAGACT CGTCGCCCGC GCCGGCGGCG TCGATGACTT GCCGCTGGTC GGGAACAAGG CTCCAGACTT  CGAGGCCGAG GCTGTGTTCG ACCAGGAGTT CATCAACGTG AAGCTCTCTG ATTACATTGG GAAGAAGTAC GTCATTCTGT TCTTCTACCC CTTGGATTTC ACCTTCGTCT GCCCGACCGA  GATTACTGCC TTCAGTGATA GATACGAGGA ATTCGAGAAG TTGAACACTG AGGTTCTTGG CGTCTCCATT GACAGTGTGT TCTCCCACCT TGCATGGGTG CAGACAGACA GGAAGTCTGG  TGGGCTTGGC GATCTTAAAT ACCCACTTAT TTCTGATGTC ACCAAATCAA TTTCAAAGGC CTTTGGTGTT CTGATCCCTA GCCAGGGTAT TGCTCTGAGA GGACTGTTCA TCATTGACAA  GGAGGGAGTG ATTCAGCACT CTACCATTAA CAACCTTGCC ATTGGTCGTA GTGTGGATGA GACCATGAGG ACCCTTCAGG CATTGCAGTA CGTCCAGGAG AACCCAGACG AGGTGTGCCC  GGCCGGCTGG AAGCCAGGGG AGAAGTCGAT GAAGCCCGAC CCCAAGGGAA GCAAAGAGTA CTTCGCGGCC ATCTAGACTC CCCGTCATTG AGAAGCTTTG CTACTCTATC ATGGTGCCTG  TTAAGTGCCC CAGCGGTAGG TCCTTGTGGA GTTTTGCGGA GCTCGCGTTT TGACATGCCT TTGTGCCTTG AACCGAGTGT GCTAGCCCTT GTGCTGTTGT GCATCCCGAT TGAGTGCTGT  TCTTTGCCAC TTCGTTTAAT TTTTCACCTG ACGAATAAGG TTCATTTGGC ACGTGATTGA GAGTTCACGC TTCTGGTGTA GTTTGCTGGG CTTCTGTTTG TAGCATTGTC TGGTAAGCTT 
CGCGTCGATG CTGATA 

Retrieve as FASTA