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Entry information : Sb2CysPrx (Sobic.004G168500.1 [2.1] / Sb04g021990 [1.4])
Entry ID 897
Creation 2008-10-22 (Christophe Dunand)
Last sequence changes 2011-08-12 (Christophe Dunand)
Sequence status complete
Reviewer Messaoudi
Last annotation changes 2014-08-04 (Messaoudi)
Peroxidase information: Sb2CysPrx (Sobic.004G168500.1 [2.1] / Sb04g021990 [1.4])
Name (synonym) Sb2CysPrx (Sobic.004G168500.1 [2.1] / Sb04g021990 [1.4])
Class Typical 2-Cysteine peroxiredoxin    [Orthogroup: 2CysPrx001]
Taxonomy Eukaryota Viridiplantae Streptophyta Monocotyledons Poaceae Sorghum
Organism Sorghum bicolor    [TaxId: 4558 ]
Cellular localisation N/D
Tissue types Callus
Seedlings
Inducers Nitrogen starvation
Salt stress
Repressor N/D
Best BLASTp hits
Perox score E-value Sb2CysPrx
start..stop		 S start..stop
Zm2CysPrx02 520 0 1..260 1..260
Zm2CysPrx01 510 0 1..260 1..260
Ta2CysPrx 437 1.33e-157 1..260 1..258
Os2CysPrx01 429 3.22e-154 2..260 3..261
Gene structure Fichier Exons►
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 51207389..51207577 187 N° 2 51207688..51207762 73 N° 3 51207908..51207989 80 N° 4 51208079..51208158 78
N° 5 51209744..51209869 124 N° 6 51209986..51210099 112 N° 7 51210761..51210877 115  
join(51207389..51207577,51207688..51207762,51207908..51207989,51208079..51208158 ,51209744..51209869,51209986..51210099,51210761..51210877)


exon

Literature and cross-references Sb2CysPrx (Sobic.004G168500.1 [2.1] / Sb04g021990 [1.4])
Literature Cordonnier-Pratt,M.-M. et al., unpublished
DNA ref. Phytozome 12:   chromosome_4 (51207389..51210877)
Cluster/Prediction ref. UniGene:   Sbi.3994
Protein sequence: Sb2CysPrx (Sobic.004G168500.1 [2.1] / Sb04g021990 [1.4])
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   260 (334)
PWM (Da):   %s   27951.47 (36259.5) Transmb domain:   %s   i5-24o
PI (pH):   %s   6.54 (7.34) Peptide Signal:   %s   cut: 20 range:20-353
Sequence
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Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MACSFAAATTVSSAPTPASRPLAAAPQSVSVARSAVATAARPLRL
AASRSARATRLVARAGGVDDLPLVGNKAPDFEAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYEEFEKLNTEVLGVSIDSFSHLAWVQTDRKSGGLGDLKYPLISDVTKSISKAFGVLIPSQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETMRTLQALQYVQENPDEVCPAGWKPGEKSMKPDPKGSKEYFAAI*

Retrieve as FASTA  
Remarks Complete sequence from genomic (chromo 4, 6 introns) and 60 ESTs.
DNA ►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCCTGCTCCTTCGCCGCCGCCACCACCGTCTCTTCCGCCCCCACCCCGGCCTCTAGGCCCCTCGCCGCTGCCCCGCAGTCCGTCTCCGTCGCCCGCTCCGCGGTCGCCACCGCCGCC
AGGCCGCTCCGCCTCGCCGCCTCCAGATCCGCGCGGGCCACCAGACTCGTCGCCCGCGCCGGCGGCGTCTCGTAAGTTCTCTCGCGTCTTGCCTCGCCTTACCGTACTACGGGTTTGCTT
CTCACCCCCTTCTTCTTTGCACTCACGGCTCTCGCCCTTGTGCCTCTGCTCTGCTCTGTAGGATGACTTGCCGCTGGTCGGGAACAAGGCTCCAGACTTCGAGGCCGAGGCTGTGTTCGA
CCAGGAGTTCATCAACACGTATGTGCACCTCTCTCTCTCCGCGCAATCTCGCGTGGTTTATGTATGCTGTGGCAGCAGAACTCTGAAATGTTTCGTCCTCTCAAATTGCTCCTAAGACCC
TTTTATGTGGCTGGCGATGACATTGCTCTTTGTGCTTTTGCAGGTGAAGCTCTCTGATTACATTGGGAAGAAGTACGTCATTCTGTTCTTCTACCCCTTGGATTTCACCTTCGTCTGCCC
GACCGCGGTGAGGATAAAACATTAGCATTAGTATCAACAAGACACGTTTGGAGTGGGTCTACGAGATTCTGATAAACTAACGCCCGGTACTTGTAGAGATTACTGCCTTCAGTGATAGAT
ACGAGGAATTCGAGAAGTTGAACACTGAGGTTCTTGGCGTCTCCATTGACAGTGTGTGGTATGTTATAATGCCCTGGTATTCCATGATATGATAGCATCTGTCAGTATGAATCAGTCTGT
CAATTGTTCTTAAGGATAAGTGAGTGTAGTTGACATCTGATGCCTCCACTGTTCGTACGGGGATTGTTCTCTCATTTGTCATATTCGTAGTTAGCTGTTGAAGTACATTTCAGCTTTGAT
ATGTGCTAGCTCATAACTGAAATAGAAATATTATGGTTGAACTGCTCATATAATGAGAAATTCATGTGCTACTTCTAGGTTATCTTTGGAGCACAACTGCTGTACTTGTATGTATGGCTC
TTGAGCAGTCACATTATTTCTAAAATTAATTGTGGAAATTATGTTTATGTGGAGTTAGAGAAAAGTAGTTATACAAATACACAATATTCTATAACAGTAAGGTAGTCGCTGTGTAAGGGT
GGGGCAGGGGTTCAGGGGTTTTCTCGATCTGTGTGAGAAGATCTTCTTAAGCCGGAATACCCTGGGACTGTCTAGCCACCGTGGATTGAGTTATTTTTTTATAACAGTAAGGTAGTGTTT
CCTTTACACTTGCCGGTTTCAATATTTGGCAAAGTAGTATGACCACACATTCTGCTTTTTTTTCTCATGGTGAAAGATACGTGCTGCGCATTATCAATGTAACTATTAATAGAAAAAACC
ATCTACATGAACATAACAGCAATGACAGTAGGGATGAGAACAGTCGGAATGGTACTATAATACAGAATCTGAAAGCGGTTGGTGCCGGATTTTCCCCTTTTTATCAAAATAAGTAATGAA
GAAAATGGTTGTGATAAAATCACAAAATGTCAACTTTCATGTTTTGATAGAAACGGAAATGTTATGATAATACGGAAAACGATATACCTGCTTTCACCTCTTAGTGACACGTCACTATCC
AATATTTATTTCCAGATTTTCTATTGGGACTAAGAACTCACATTGCACTTGAGGCCTTAAATTTAACCTTTGTTGGTCCAAAGAAAATCTCTTCTTAGCTTCATAATCTTATTAAATTGA
TCATTTCTGTTCGCTAAAGTACTTTACAATTACAAATCTTTGGAGAACTGCATAGTCCCTCCATTTTTATTTTTTAAATATGCCCCATTGAGTTTTTACTATAATTTTGACCAACAATAT
TATTTAATTACTTAGATAAGTAAAGTGAAAACTAAATCAGTTCTAAAGTCAAATGTTTATAGAAGAGACAAATAGTCAAATAAATAAAAGAGTCAAAGGTTAAACAGAGGAGTACTATTA
AAAATGCCCTAATGACTTGTATATTTGAAGTCTTTATACAGCTATGCTTGTATTTGTTATTACTCCCTCTGTTCCAAATTATAGGTTGTCTTGGCTTTTCTAATATCTAGACATAGCCTA
TATCTAGGTGCATAGCAAAAGCTATTTACCTAAAAAAACCAAAACGACCTATAATTTGGGACAGAGGGAATACCTTTTTATATCATTGAATGTATGTGGTCAAAAGTAGAAATCTTGACA
TAAATAGATCTTGGGTTTTGGTTACTGTGATTTCATCATAATCATAACTGTTGTTAATTGCTTTAGTGTTTGTTTGGATGCAGTTCTCCCACCTTGCATGGGTGCAGACAGACAGGAAGT
CTGGTGGGCTTGGCGATCTTAAATACCCACTTATTTCTGATGTCACCAAATCAATTTCAAAGGCCTTTGGTGTTCTGATCCCTAGCCAGAGGTTTTTTTTTTCAACCACTGGATATTCTT
CTCCAGATTCTAACCCTGTGGAGTCCTTTTGTTTTCCGTATTATGTTTCTGTTTGTTGCTCTCTATATCTGAATGTTCTTTGGGCAGGGTATTGCTCTGAGAGGACTGTTCATCATTGAC
AAGGAGGGAGTGATTCAGCACTCTACCATTAACAACCTTGCCATTGGTCGTAGTGTGGATGAGACCATGAGGACCCTTCAGAGGTATGTTCTATGTTGGTCGTGCTACATTTCTGATAGG
CAGTTGCTCTGGACTTCAGAAATAAGAAGTTTTCTGTGCTGTTACTTAAAACCTAAAGTAAAATGAATATGCCTTTTGTGTTCATGGTGTTTGTGATACACAACTTGAACAAGATTCAAC
ACTGGTGTGCATTTTACATGATGAATTGTTTGTCAACACTTGACAGTGCAATATAGTTCTCCATTTGCAGGGACAAAATAAACTGTTTCTAACCTTTAAATCATACTCTAATCCAAATGC
TTTAAAATTACAGAAGAATGACTGAAAATATGTACATTATTTATGTGACCTACTTTGGCATTAGTGTACAAGGCCATTTTACTATAGTACTATACTAAATATAACTGTCAAAGTACTACA
CATACCACTTTTCATAGGGCAAGATGCATCATAGCAAGCATATATGGAAACAAGTGAGGCTCTTGATATGGGATGACGTTATGTAGTTTCACAATGAAAAATAAGCATAATCCCATGATT
ACAATTGTGGTACATCATTTGGGCATTTTGCTGAGCTGGTTTACGCCCTACCCAGTTACATAGCTGCTTTTGCCATTTTATACAGTCCACCGATAACAATCAGGAGAATATTGAAGTTGA
CATCTCATTTCAATGTTTCACCAGGCATTGCAGTACGTCCAGGAGAACCCAGACGAGGTGTGCCCGGCCGGCTGGAAGCCAGGGGAGAAGTCGATGAAGCCCGACCCCAAGGGAAGCAAA
GAGTACTTCGCGGCCATCTAG

Retrieve as FASTA  
CDS►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCCTGCTCCTTCGCCGCCGCCACCACCGTCTCTTCCGCCCCCACCCCGGCCTCTAGGCCCCTCGCCGCTGCCCCGCAGTCCGTCTCCGTCGCCCGCTCCGCGGTCGCCACCGCCGCC
AGGCCGCTCCGCCTCGCCGCCTCCAGATCCGCGCGGGCCACCAGACTCGTCGCCCGCGCCGGCGGCGTCGATGACTTGCCGCTGGTCGGGAACAAGGCTCCAGACTTCGAGGCCGAGGCT
GTGTTCGACCAGGAGTTCATCAACGTGAAGCTCTCTGATTACATTGGGAAGAAGTACGTCATTCTGTTCTTCTACCCCTTGGATTTCACCTTCGTCTGCCCGACCGAGATTACTGCCTTC
AGTGATAGATACGAGGAATTCGAGAAGTTGAACACTGAGGTTCTTGGCGTCTCCATTGACAGTGTGTTCTCCCACCTTGCATGGGTGCAGACAGACAGGAAGTCTGGTGGGCTTGGCGAT
CTTAAATACCCACTTATTTCTGATGTCACCAAATCAATTTCAAAGGCCTTTGGTGTTCTGATCCCTAGCCAGGGTATTGCTCTGAGAGGACTGTTCATCATTGACAAGGAGGGAGTGATT
CAGCACTCTACCATTAACAACCTTGCCATTGGTCGTAGTGTGGATGAGACCATGAGGACCCTTCAGGCATTGCAGTACGTCCAGGAGAACCCAGACGAGGTGTGCCCGGCCGGCTGGAAG
CCAGGGGAGAAGTCGATGAAGCCCGACCCCAAGGGAAGCAAAGAGTACTTCGCGGCCATCTAG

Retrieve as FASTA  
cDNA►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
GCAGACACGT CCCTATTTAA AACCTCCTCG CTCACTCAGC CATAGCCATC CCCAACACCC CCGGAAAGGA AACCCATCAC ACCAAATCCC CAACCCCAAA CCCCCAATCC ACCCTCATCC  ACTCCGGGCG GCCATGGCCT GCTCCTTCGC CGCCGCCACC ACCGTCTCTT CCGCCCCCAC CCCGGCCTCT AGGCCCCTCG CCGCTGCCCC GCAGTCCGTC TCCGTCGCCC GCTCCGCGGT  CGCCACCGCC GCCAGGCCGC TCCGCCTCGC CGCCTCCAGA TCCGCGCGGG CCACCAGACT CGTCGCCCGC GCCGGCGGCG TCGATGACTT GCCGCTGGTC GGGAACAAGG CTCCAGACTT  CGAGGCCGAG GCTGTGTTCG ACCAGGAGTT CATCAACGTG AAGCTCTCTG ATTACATTGG GAAGAAGTAC GTCATTCTGT TCTTCTACCC CTTGGATTTC ACCTTCGTCT GCCCGACCGA  GATTACTGCC TTCAGTGATA GATACGAGGA ATTCGAGAAG TTGAACACTG AGGTTCTTGG CGTCTCCATT GACAGTGTGT TCTCCCACCT TGCATGGGTG CAGACAGACA GGAAGTCTGG  TGGGCTTGGC GATCTTAAAT ACCCACTTAT TTCTGATGTC ACCAAATCAA TTTCAAAGGC CTTTGGTGTT CTGATCCCTA GCCAGGGTAT TGCTCTGAGA GGACTGTTCA TCATTGACAA  GGAGGGAGTG ATTCAGCACT CTACCATTAA CAACCTTGCC ATTGGTCGTA GTGTGGATGA GACCATGAGG ACCCTTCAGG CATTGCAGTA CGTCCAGGAG AACCCAGACG AGGTGTGCCC  GGCCGGCTGG AAGCCAGGGG AGAAGTCGAT GAAGCCCGAC CCCAAGGGAA GCAAAGAGTA CTTCGCGGCC ATCTAGACTC CCCGTCATTG AGAAGCTTTG CTACTCTATC ATGGTGCCTG  TTAAGTGCCC CAGCGGTAGG TCCTTGTGGA GTTTTGCGGA GCTCGCGTTT TGACATGCCT TTGTGCCTTG AACCGAGTGT GCTAGCCCTT GTGCTGTTGT GCATCCCGAT TGAGTGCTGT  TCTTTGCCAC TTCGTTTAAT TTTTCACCTG ACGAATAAGG TTCATTTGGC ACGTGATTGA GAGTTCACGC TTCTGGTGTA GTTTGCTGGG CTTCTGTTTG TAGCATTGTC TGGTAAGCTT 
CGCGTCGATG CTGATA 

Retrieve as FASTA