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Entry information : SbPrx139 (Sobic.010G232500.1 [2.1] / Sb10g027490 [1.4])
Entry ID 903
Creation 2007-09-10 (Christophe Dunand)
Last sequence changes 2007-09-10 (Christophe Dunand)
Sequence status complete
Reviewer Messaoudi
Last annotation changes 2014-08-04 (Messaoudi)
Peroxidase information: SbPrx139 (Sobic.010G232500.1 [2.1] / Sb10g027490 [1.4])
Name (synonym) SbPrx139 (Sobic.010G232500.1 [2.1] / Sb10g027490 [1.4])
Class Class III peroxidase    [Orthogroup: Prx007]
Taxonomy Eukaryota Viridiplantae Streptophyta Monocotyledons Poaceae Sorghum
Organism Sorghum bicolor    [TaxId: 4558 ]
Cellular localisation N/D
Tissue types Ovaries
Seedlings
Inducer Dark growth
Repressor N/D
Best BLASTp hits
Perox score E-value SbPrx139
start..stop		 S start..stop
SofPrx01 625 0 1..331 1..331
ZmPrx20 598 0 24..331 21..328
SiPrx29 576 0 19..331 17..330
TaPrx18-1A 524 0 25..329 25..330
Gene structure Fichier Exons►
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 57294775..57294990 214 N° 2 57295123..57295314 190 N° 3 57295457..57295619 161 N° 4 57297352..57297776 423
join(57294775..57294990,57295123..57295314,57295457..57295619,57297352..57297776 )


exon

Literature and cross-references SbPrx139 (Sobic.010G232500.1 [2.1] / Sb10g027490 [1.4])
Literature Cordonnier-Pratt,M.-M. et al., unpublished
DNA ref. Phytozome 12:   chromosome_10 (57294775..57297776)
Protein sequence: SbPrx139 (Sobic.010G232500.1 [2.1] / Sb10g027490 [1.4])
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   331 (306)
PWM (Da):   %s   35653.49 (33178.0) Transmb domain:   %s   i5-27o
PI (pH):   %s   8.57 (8.01) Peptide Signal:   %s   cut: 26 range:26-331
Sequence
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Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MVRRMVLVAALVVATVAVLAGGARAQLKEGFYGSTCPQAEKIVKE
FVKAHIPHAPDVAATLIRTHFHDCFVRGCDASVLLNATGGKEAEKDAAPNQTLRGFGFIDRIKALLEKECPGVVSCADILALAARDSVGVIGGPFWSVPTGRRDGTVSIKQEALDQIPAPTMNFTTLLQSFRNKSLDLADLVWLSGA
HTIGISHCNSFSERLYNFTGRAVPGDADPSLDPLYAAKLRRKCKTLTDNTTIVEMDPGSFRTFDLSYYRGVLKRRGLFQSDAALITDAASKADILSVVNAPPEVFFQVFARSMVKMGAID
VKTGSEGEIRKHCAFVNKH

Retrieve as FASTA  
Remarks Complete sequence from 2 ESTs and genomic (chromo 10, 3 introns).
DNA ►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGTGAGAAGAATGGTGCTGGTGGCGGCGCTGGTGGTGGCCACCGTCGCCGTCCTCGCCGGCGGCGCGCGGGCGCAGCTCAAGGAAGGGTTCTACGGCTCCACCTGCCCGCAGGCGGAG
AAGATCGTCAAGGAGTTCGTCAAGGCGCACATCCCGCACGCGCCTGACGTCGCCGCCACCCTGATCCGCACCCACTTCCACGACTGCTTCGTCAGGGGGTACGTACACTTCAGCTAGCTA
GCATGCCAGCGTCCTGCCTGCCTGCTGCCTGCGCGCCGACGAATGCCGATGCCGACGATGACCGACTCTGCGCCATGGCATGCTGTAATGCTTCCCCTGCTGCTATGCAGGGCTGCGACG
CGTCGGTGCTGCTCAACGCGACGGGCGGCAAGGAGGCGGAGAAGGACGCGGCGCCCAACCAGACGCTGCGGGGCTTCGGCTTCATCGACCGCATCAAGGCGCTGCTCGAGAAGGAGTGCC
CCGGCGTCGTGTCCTGCGCCGACATCCTCGCGCTCGCCGCCCGCGACTCCGTCGGCGTCATCTCGTAAGCCTTCCTCATCGAGCGAGCGTGTCCCCATGCATCATATCCTGAATTAATGC
ATCAGCCGCCGGCCGGCCGGTGACTGTCGATCACTGACTCTTCTCCTCTCTCTCTCCGCCGTGCGCGTATGATATGATGCATGCAGGGCGGGCCGTTCTGGAGCGTGCCGACGGGGAGGC
GCGACGGCACCGTGTCCATCAAGCAGGAGGCGCTGGACCAGATCCCCGCGCCCACCATGAACTTCACCACACTCCTCCAGTCCTTCCGCAACAAGAGCCTCGACCTCGCCGACCTCGTCT
GGCTCTCAGAGGTACGCTACTCCCTCCATTGCCGCCACCCACCATTCTCAGCTCAGCTACTACACTGCGGCTTTATTTGTTATTTCACCTCACGACAACTTCACTGGCATCATTTAACAA
ATTGCTTAAATAAAAGGAGAAACAAACAAGAAGTTTATCTTCCACCTGTCAATCAATCAACTTAATTTACCCAGTCAGACAACTGACATGCCAAGGAACTAGACAGATTAGCAGTGACAG
GTCTGACTAGTCCTCAGATTACATTACAGGGCACACTTGCAAGTTTATCTGCTTATTAAACGTGCTGCTTCCAACCAACAGCACCGACACCGAGTGATCAATGTTACATACGCTTTCGTT
GGACGCTGGGTGAATCATTTGTTTGGAGAGTCCTCCTATCTGAATAGTATGTTCGGTCAGGCCCGCATAGGCACTAGGCAGTAGGACTAGGAGTGCTCTGATTGTACTAGTAGATGACTA
GTAGCCTTGGCAAATTGCTTATGACACGCTCCTACTCTAGCTACTTACTCTATGTAGGACCAGTAAGCACTGATGTCCTCCCAAACTAGATAGCTCCAAGATAAAAAATTACAGATGATG
TACAATTAGTTATGAGTAAACTGAACAAACACTAAGAGCCTAGAACGTTTCGGGAGCAATTAGTTCGATGCCATGGCCGGATTGGACGGAGAACCTGAACATGCATGGTCAAATCTGAAA
TCTTCATCTAAAAGGCGAAAGTTCAGCACCTAACAGTATTTTAGTGACGTACTACACGCATGCACAAAACAATGTTAGGAAGCTTAAATTTGTGTTTCTAGAGTGAATCCGTAGCCACCA
GAAAAAGAGGCTTTTTAAACTGGGCAGCTGCAATTCTGTTCATATTAGTGTCAAGCACAGCTGAGTAGAGTGTAGCTGACAGCTGCACGTCATCCTTGAGGATCGGAGGGACACAGCATG
TTAGTACTAGTTAGCATCTAAAGGATGGTTTTGTCCTGCCTATGTATGTAGCTGGAGTTTGGTAGCCGGAAAATGATTAAGTACGACAGAGATAAGATAAATTTGCCTAAAAACTAGTTA
TGATAACTGACAGAGATTGTAGCTAGGTGACCCCCTGCATTGCATCCAACAAGGCAGAGGCAGGTTTAACTTACAGCGTTCTTCAGAGCAGGTCATCTTGCTTGCTTAAAGTAAAAGAAG
AGATTTGATGGCATGTGGAGAAGGTGAACTTGGAATCTGAAGATCAGAACATGTGTATACTCCTCATCATTTGAGGAGGACATCCCGGGTCACTGACCAGACTGGTTTTGACCACTGATG
TGCTTCCATTTTTCGTATGTGCATGTCTGCATGACATTAATCGGCAACCTCTTCTGATGTAGACATGCACGCTGCTGCCAACTACCTTCCACCGGTCTATTCCAATCTATAGTATCATAG
ATAGAAGATGAGCCTTTAGTATATACTCCTATATGCAAACACCAGACAGAGGATACTTCTGAAATGGTCCTTTTCCTAGAACAGACGCTTCTGATGGAGTAGGTTGATGTTGCCTTCAAA
TACATACCTCATATTTATAACCTGCCGATCGACAAATATAAGGATATAATTGCAAAGTACTCCGTATTTCAGAGAAGAGAACACTGATAATTTCCTGAATATATAGCTCCGAAAACTATA
GATACACTGAATAGTTGGCATTTCACCCAGACATTAATTCCTAATCACATTTTGCGTGTGCAGGGGCTCACACGATCGGCATCTCCCACTGCAACTCCTTCAGCGAGCGGCTGTACAACT
TCACGGGGCGCGCCGTTCCCGGGGACGCGGACCCGTCGCTGGACCCGCTGTACGCGGCGAAGCTGCGGCGGAAGTGCAAGACGCTGACGGACAACACGACGATCGTGGAGATGGACCCGG
GGAGCTTCCGCACCTTCGACCTCAGCTACTACCGCGGCGTGCTCAAGCGGCGGGGCCTGTTCCAGTCCGACGCCGCGCTCATCACCGACGCCGCCTCCAAGGCCGACATCCTCAGCGTGG
TGAACGCGCCGCCCGAGGTGTTCTTCCAGGTCTTCGCGCGCTCCATGGTGAAGATGGGCGCCATCGACGTCAAGACCGGCTCCGAGGGCGAGATCAGGAAGCACTGCGCCTTCGTCAACA
AGCACTAG

Retrieve as FASTA  
CDS►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGTGAGAAGAATGGTGCTGGTGGCGGCGCTGGTGGTGGCCACCGTCGCCGTCCTCGCCGGCGGCGCGCGGGCGCAGCTCAAGGAAGGGTTCTACGGCTCCACCTGCCCGCAGGCGGAG
AAGATCGTCAAGGAGTTCGTCAAGGCGCACATCCCGCACGCGCCTGACGTCGCCGCCACCCTGATCCGCACCCACTTCCACGACTGCTTCGTCAGGGGCTGCGACGCGTCGGTGCTGCTC
AACGCGACGGGCGGCAAGGAGGCGGAGAAGGACGCGGCGCCCAACCAGACGCTGCGGGGCTTCGGCTTCATCGACCGCATCAAGGCGCTGCTCGAGAAGGAGTGCCCCGGCGTCGTGTCC
TGCGCCGACATCCTCGCGCTCGCCGCCCGCGACTCCGTCGGCGTCATCGGCGGGCCGTTCTGGAGCGTGCCGACGGGGAGGCGCGACGGCACCGTGTCCATCAAGCAGGAGGCGCTGGAC
CAGATCCCCGCGCCCACCATGAACTTCACCACACTCCTCCAGTCCTTCCGCAACAAGAGCCTCGACCTCGCCGACCTCGTCTGGCTCTCAGGGGCTCACACGATCGGCATCTCCCACTGC
AACTCCTTCAGCGAGCGGCTGTACAACTTCACGGGGCGCGCCGTTCCCGGGGACGCGGACCCGTCGCTGGACCCGCTGTACGCGGCGAAGCTGCGGCGGAAGTGCAAGACGCTGACGGAC
AACACGACGATCGTGGAGATGGACCCGGGGAGCTTCCGCACCTTCGACCTCAGCTACTACCGCGGCGTGCTCAAGCGGCGGGGCCTGTTCCAGTCCGACGCCGCGCTCATCACCGACGCC
GCCTCCAAGGCCGACATCCTCAGCGTGGTGAACGCGCCGCCCGAGGTGTTCTTCCAGGTCTTCGCGCGCTCCATGGTGAAGATGGGCGCCATCGACGTCAAGACCGGCTCCGAGGGCGAG
ATCAGGAAGCACTGCGCCTTCGTCAACAAGCACTAG

Retrieve as FASTA