Entry information : SbPrx139 (Sobic.010G232500.1 [2.1] / Sb10g027490 [1.4])
Entry ID 903
Creation 2007-09-10 (Christophe Dunand)
Last sequence changes 2007-09-10 (Christophe Dunand)
Sequence status complete
Reviewer Messaoudi
Last annotation changes 2014-08-04 (Messaoudi)
Peroxidase information: SbPrx139 (Sobic.010G232500.1 [2.1] / Sb10g027490 [1.4])
Name (synonym) SbPrx139 (Sobic.010G232500.1 [2.1] / Sb10g027490 [1.4])
Class Class III peroxidase    [Orthogroup: Prx010]
Taxonomy Eukaryota Viridiplantae Streptophyta Monocotyledons Poaceae Sorghum
Organism Sorghum bicolor    [TaxId: 4558 ]
Cellular localisation N/D
Tissue types Ovaries
Seedlings
Inducer Dark growth
Repressor N/D
Best BLASTp hits
Perox score E-value SbPrx139
start..stop
S start..stop
SofPrx01 625 0 1..331 1..331
ZmPrx20 598 0 24..331 21..328
SiPrx29 576 0 19..331 17..330
OsPrx89 507 0 27..329 30..333
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 57294775..57294990 216 N° 2 57295123..57295314 192 N° 3 57295457..57295619 163 N° 4 57297352..57297776 425
join(57294775..57294990,57295123..57295314,57295457..57295619,57297352..57297776 )


exon

Literature and cross-references SbPrx139 (Sobic.010G232500.1 [2.1] / Sb10g027490 [1.4])
Literature Cordonnier-Pratt,M.-M. et al., unpublished
DNA ref. Phytozome 12:   chromosome_10 (57294775..57297776)
Protein sequence: SbPrx139 (Sobic.010G232500.1 [2.1] / Sb10g027490 [1.4])
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   331 (306)
PWM (Da):   %s   35653.49 (33178.0) Transmb domain:   %s   i5-27o
PI (pH):   %s   8.57 (8.01) Peptide Signal:   %s   cut: 26 range:26-331
Sequence 372
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MVRRMVLVAALVVATVAVLAGGARAQLKEGFYGSTCPQAEKIVKEFVKAHIPHAPDVAATLIRTHFHDCFVRGCDASVLLNATGGKEAEKDAAPNQTLRGFGFIDRIKALLEKECPGVVSCADILALAARDSVGVIGGPFWSVPTGRRDGTVSIKQEALDQIPAPTMNFTTLLQSFRNKSLDLADLVWLSGAHTIGISHCNSFSERLYNFTGRAVPGDADPSLDPLYAAKLRRKCKTLTDNTTIVEMDPGSFRTFDLSYYRGVLKRRGLFQSDAALITDAASKADILSVVNAPPEVFFQVFARSMVKMGAIDVKTGSEGEIRKHCAFVNKH

Retrieve as FASTA  
Remarks Complete sequence from 2 ESTs and genomic (chromo 10, 3 introns).
DNA
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
TGGTGAGAAGAATGGTGCTGGTGGCGGCGCTGGTGGTGGCCACCGTCGCCGTCCTCGCCGGCGGCGCGCGGGCGCAGCTCAAGGAAGGGTTCTACGGCTCCACCTGCCCGCAGGCGGAGA
AGATCGTCAAGGAGTTCGTCAAGGCGCACATCCCGCACGCGCCTGACGTCGCCGCCACCCTGATCCGCACCCACTTCCACGACTGCTTCGTCAGG
GTACGTACACTTCAGCTAGCTAGCA
TGCCAGCGTCCTGCCTGCCTGCTGCCTGCGCGCCGACGAATGCCGATGCCGACGATGACCGACTCTGCGCCATGGCATGCTGTAATGCTTCCCCTGCTGCTATGCAGGGCTGCGACGCGT
CGGTGCTGCTCAACGCGACGGGCGGCAAGGAGGCGGAGAAGGACGCGGCGCCCAACCAGACGCTGCGGGGCTTCGGCTTCATCGACCGCATCAAGGCGCTGCTCGAGAAGGAGTGCCCCG
GCGTCGTGTCCTGCGCCGACATCCTCGCGCTCGCCGCCCGCGACTCCGTCGGCGTCATC
GTAAGCCTTCCTCATCGAGCGAGCGTGTCCCCATGCATCATATCCTGAATTAATGCATCAG
CCGCCGGCCGGCCGGTGACTGTCGATCACTGACTCTTCTCCTCTCTCTCTCCGCCGTGCGCGTATGATATGATGCATGCAGGGCGGGCCGTTCTGGAGCGTGCCGACGGGGAGGCGCGAC
GGCACCGTGTCCATCAAGCAGGAGGCGCTGGACCAGATCCCCGCGCCCACCATGAACTTCACCACACTCCTCCAGTCCTTCCGCAACAAGAGCCTCGACCTCGCCGACCTCGTCTGGCTC
TCAG
GTACGCTACTCCCTCCATTGCCGCCACCCACCATTCTCAGCTCAGCTACTACACTGCGGCTTTATTTGTTATTTCACCTCACGACAACTTCACTGGCATCATTTAACAAATTGCTT
AAATAAAAGGAGAAACAAACAAGAAGTTTATCTTCCACCTGTCAATCAATCAACTTAATTTACCCAGTCAGACAACTGACATGCCAAGGAACTAGACAGATTAGCAGTGACAGGTCTGAC
TAGTCCTCAGATTACATTACAGGGCACACTTGCAAGTTTATCTGCTTATTAAACGTGCTGCTTCCAACCAACAGCACCGACACCGAGTGATCAATGTTACATACGCTTTCGTTGGACGCT
GGGTGAATCATTTGTTTGGAGAGTCCTCCTATCTGAATAGTATGTTCGGTCAGGCCCGCATAGGCACTAGGCAGTAGGACTAGGAGTGCTCTGATTGTACTAGTAGATGACTAGTAGCCT
TGGCAAATTGCTTATGACACGCTCCTACTCTAGCTACTTACTCTATGTAGGACCAGTAAGCACTGATGTCCTCCCAAACTAGATAGCTCCAAGATAAAAAATTACAGATGATGTACAATT
AGTTATGAGTAAACTGAACAAACACTAAGAGCCTAGAACGTTTCGGGAGCAATTAGTTCGATGCCATGGCCGGATTGGACGGAGAACCTGAACATGCATGGTCAAATCTGAAATCTTCAT
CTAAAAGGCGAAAGTTCAGCACCTAACAGTATTTTAGTGACGTACTACACGCATGCACAAAACAATGTTAGGAAGCTTAAATTTGTGTTTCTAGAGTGAATCCGTAGCCACCAGAAAAAG
AGGCTTTTTAAACTGGGCAGCTGCAATTCTGTTCATATTAGTGTCAAGCACAGCTGAGTAGAGTGTAGCTGACAGCTGCACGTCATCCTTGAGGATCGGAGGGACACAGCATGTTAGTAC
TAGTTAGCATCTAAAGGATGGTTTTGTCCTGCCTATGTATGTAGCTGGAGTTTGGTAGCCGGAAAATGATTAAGTACGACAGAGATAAGATAAATTTGCCTAAAAACTAGTTATGATAAC
TGACAGAGATTGTAGCTAGGTGACCCCCTGCATTGCATCCAACAAGGCAGAGGCAGGTTTAACTTACAGCGTTCTTCAGAGCAGGTCATCTTGCTTGCTTAAAGTAAAAGAAGAGATTTG
ATGGCATGTGGAGAAGGTGAACTTGGAATCTGAAGATCAGAACATGTGTATACTCCTCATCATTTGAGGAGGACATCCCGGGTCACTGACCAGACTGGTTTTGACCACTGATGTGCTTCC
ATTTTTCGTATGTGCATGTCTGCATGACATTAATCGGCAACCTCTTCTGATGTAGACATGCACGCTGCTGCCAACTACCTTCCACCGGTCTATTCCAATCTATAGTATCATAGATAGAAG
ATGAGCCTTTAGTATATACTCCTATATGCAAACACCAGACAGAGGATACTTCTGAAATGGTCCTTTTCCTAGAACAGACGCTTCTGATGGAGTAGGTTGATGTTGCCTTCAAATACATAC
CTCATATTTATAACCTGCCGATCGACAAATATAAGGATATAATTGCAAAGTACTCCGTATTTCAGAGAAGAGAACACTGATAATTTCCTGAATATATAGCTCCGAAAACTATAGATACAC
TGAATAGTTGGCATTTCACCCAGACATTAATTCCTAATCACATTTTGCGTGTGCAGGGGCTCACACGATCGGCATCTCCCACTGCAACTCCTTCAGCGAGCGGCTGTACAACTTCACGGG
GCGCGCCGTTCCCGGGGACGCGGACCCGTCGCTGGACCCGCTGTACGCGGCGAAGCTGCGGCGGAAGTGCAAGACGCTGACGGACAACACGACGATCGTGGAGATGGACCCGGGGAGCTT
CCGCACCTTCGACCTCAGCTACTACCGCGGCGTGCTCAAGCGGCGGGGCCTGTTCCAGTCCGACGCCGCGCTCATCACCGACGCCGCCTCCAAGGCCGACATCCTCAGCGTGGTGAACGC
GCCGCCCGAGGTGTTCTTCCAGGTCTTCGCGCGCTCCATGGTGAAGATGGGCGCCATCGACGTCAAGACCGGCTCCGAGGGCGAGATCAGGAAGCACTGCGCCTTCGTCAACAAGCACTA
G

Retrieve as FASTA  
CDS
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
TGGTGAGAAGAATGGTGCTGGTGGCGGCGCTGGTGGTGGCCACCGTCGCCGTCCTCGCCGGCGGCGCGCGGGCGCAGCTCAAGGAAGGGTTCTACGGCTCCACCTGCCCGCAGGCGGAGA
AGATCGTCAAGGAGTTCGTCAAGGCGCACATCCCGCACGCGCCTGACGTCGCCGCCACCCTGATCCGCACCCACTTCCACGACTGCTTCGTCAGG
GGCTGCGACGCGTCGGTGCTGCTCA
ACGCGACGGGCGGCAAGGAGGCGGAGAAGGACGCGGCGCCCAACCAGACGCTGCGGGGCTTCGGCTTCATCGACCGCATCAAGGCGCTGCTCGAGAAGGAGTGCCCCGGCGTCGTGTCCT
GCGCCGACATCCTCGCGCTCGCCGCCCGCGACTCCGTCGGCGTCATC
GGCGGGCCGTTCTGGAGCGTGCCGACGGGGAGGCGCGACGGCACCGTGTCCATCAAGCAGGAGGCGCTGGACC
AGATCCCCGCGCCCACCATGAACTTCACCACACTCCTCCAGTCCTTCCGCAACAAGAGCCTCGACCTCGCCGACCTCGTCTGGCTCTCAG
GGGCTCACACGATCGGCATCTCCCACTGCA
ACTCCTTCAGCGAGCGGCTGTACAACTTCACGGGGCGCGCCGTTCCCGGGGACGCGGACCCGTCGCTGGACCCGCTGTACGCGGCGAAGCTGCGGCGGAAGTGCAAGACGCTGACGGACA
ACACGACGATCGTGGAGATGGACCCGGGGAGCTTCCGCACCTTCGACCTCAGCTACTACCGCGGCGTGCTCAAGCGGCGGGGCCTGTTCCAGTCCGACGCCGCGCTCATCACCGACGCCG
CCTCCAAGGCCGACATCCTCAGCGTGGTGAACGCGCCGCCCGAGGTGTTCTTCCAGGTCTTCGCGCGCTCCATGGTGAAGATGGGCGCCATCGACGTCAAGACCGGCTCCGAGGGCGAGA
TCAGGAAGCACTGCGCCTTCGTCAACAAGCACTAG

Retrieve as FASTA