Entry information : GmPrx[P]110 (Glyma02g08780.1)
Entry ID 9033
Creation 2011-07-04 (Qiang Li)
Last sequence changes 2011-12-14 (Qiang Li)
Sequence status theoretical translation / pseudogene
Reviewer Not yet reviewed
Last annotation changes 2011-11-28 (Qiang Li)
Peroxidase information: GmPrx[P]110 (Glyma02g08780.1)
Name (synonym) GmPrx[P]110 (Glyma02g08780.1)
Class Class III peroxidase     [Orthogroup: Prx050]*
Taxonomy Eukaryota Viridiplantae Streptophyta Fabaceae Glycine
Organism Glycine max (soybean)    [TaxId: 3847 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value GmPrx[P]110
start..stop
S start..stop
GmPrx329 332 3e-116 1..189 144..345
LjPrx11 283 1e-96 1..189 148..347
MtPrx48 259 4e-87 1..189 150..352
GmPrx276 249 2e-83 1..186 146..345
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 6800304..6800870 567  
complement(join(6800304..6800870))


exon

Literature and cross-references GmPrx[P]110 (Glyma02g08780.1)
DNA ref. Phytozome 12:   Gm02 (6800870..6800304)
Protein sequence: GmPrx[P]110 (Glyma02g08780.1)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   187
PWM (Da):   %s   20406.44  
PI (pH):   %s   7.92
Sequence
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Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
TGCPDYAVLL GRRDGLSFST *GTRDLPKPF NTTGVFTAKN FDVTDVVALS GTHTCGTFFN RLSPLDPNID KTLAKQLQST CPDANSGNTA NLDIRTPTLF DNKYYLDLMN RQGVFTSDQD 
LLSDKRTKAL VNAFALN*TL FFDKFVDATI RLSQLDVLTG NQGEIRAKCN VVNARKSLLT SVVQLVDQF 

Retrieve as FASTA  
Remarks Pesudogene from genomic. Incorrect annotation from Phytozome (Both 5'and 3' ends are missing, Gaps in frame and Stops in frame).
DNA
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.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ACAGGATGCC CCGATTATGC AGTGCTACTA GGAAGACGAG ATGGCCTGAG CTTCAGCACA TGAGGAACAC GTGATCTCCC CAAACCCTTC AACACCACCG GCGTTTTCAC CGCCAAAAAC  TTTGATGTCA CCGACGTTGT CGCCTTATCC GGCACACACA CCTGCGGCAC ATTCTTCAAC AGGCTCTCCC CTCTCGACCC CAACATAGAC AAAACCCTAG CGAAGCAACT CCAGTCCACG  TGCCCCGACG CAAACTCCGG CAACACCGCT AACTTGGACA TCAGAACCCC GACACTGTTC GACAACAAGT ACTACCTCGA CCTAATGAAC CGCCAGGGCG TGTTCACCTC GGATCAGGAC  TTGCTCAGTG ATAAGCGGAC TAAAGCGTTG GTGAATGCAT TTGCATTGAA TTAGACGTTG TTCTTTGACA AGTTTGTGGA TGCTACTATA AGGTTGAGTC AATTGGATGT GCTCACTGGG 
AATCAAGGTG AAATTAGGGC TAAGTGCAAT GTCGTGAATG CTAGGAAATC TTTGTTGACG TCTGTGGTGC AATTGGTTGA TCAGTTT 

Retrieve as FASTA  
CDS
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.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ACAGGATGCC CCGATTATGC AGTGCTACTA GGAAGACGAG ATGGCCTGAG CTTCAGCACA TGAGGAACAC GTGATCTCCC CAAACCCTTC AACACCACCG GCGTTTTCAC CGCCAAAAAC  TTTGATGTCA CCGACGTTGT CGCCTTATCC GGCACACACA CCTGCGGCAC ATTCTTCAAC AGGCTCTCCC CTCTCGACCC CAACATAGAC AAAACCCTAG CGAAGCAACT CCAGTCCACG  TGCCCCGACG CAAACTCCGG CAACACCGCT AACTTGGACA TCAGAACCCC GACACTGTTC GACAACAAGT ACTACCTCGA CCTAATGAAC CGCCAGGGCG TGTTCACCTC GGATCAGGAC  TTGCTCAGTG ATAAGCGGAC TAAAGCGTTG GTGAATGCAT TTGCATTGAA TTAGACGTTG TTCTTTGACA AGTTTGTGGA TGCTACTATA AGGTTGAGTC AATTGGATGT GCTCACTGGG 
AATCAAGGTG AAATTAGGGC TAAGTGCAAT GTCGTGAATG CTAGGAAATC TTTGTTGACG TCTGTGGTGC AATTGGTTGA TCAGTTT 

Retrieve as FASTA