Entry information : GmPrx[P]149 (Glyma05g17130.1)
Entry ID 9034
Creation 2011-07-04 (Qiang Li)
Last sequence changes 2011-12-14 (Qiang Li)
Sequence status theoretical translation / pseudogene
Reviewer Not yet reviewed
Last annotation changes 2011-11-28 (Qiang Li)
Peroxidase information: GmPrx[P]149 (Glyma05g17130.1)
Name (synonym) GmPrx[P]149 (Glyma05g17130.1)
Class Class III peroxidase    [Orthogroup: N/D] N/D
Taxonomy Eukaryota Viridiplantae Streptophyta Fabaceae Glycine
Organism Glycine max (soybean)    [TaxId: 3847 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value GmPrx[P]149
start..stop
S start..stop
GmPrx32 111 2e-31 28..83 30..85
PvPrx14 86 5e-22 32..83 30..81
LjPrx11 82 9e-21 26..83 25..82
GmPrx329 82 9e-21 33..83 28..78
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 19591589..19591837 249  
complement(join(19591589..19591837))


exon

Literature and cross-references GmPrx[P]149 (Glyma05g17130.1)
DNA ref. Phytozome 12:   Gm05 (19591837..19591589)
Protein sequence: GmPrx[P]149 (Glyma05g17130.1)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   82
PWM (Da):   %s   9038.77  
PI (pH):   %s   9.29
Sequence
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

FCISNLVIYF SSIAYPCITL GKK*AFLNVS SLAPPPIVDG LSWDFYRTSC PMLEGIVSKH LQKVLKKDNG PTPALLRIFF HDC 

Retrieve as FASTA  
Remarks Pseudogene from genomic. Incorrect prediction from Phytozome (Just exon 1, 5' end is missing. Stop in frame).
DNA
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
TTTTGCATTA GTAATCTTGT TATTTATTTT TCAAGCATTG CTTATCCTTG CATTACTCTG GGTAAAAAGT AAGCTTTCTT GAATGTTTCC TCCTTGGCAC CTCCTCCAAT TGTGGATGGA  CTTTCATGGG ATTTCTATAG GACAAGTTGT CCCATGCTTG AAGGGATAGT GAGCAAGCAT CTCCAGAAGG TGTTAAAGAA GGACAATGGT CCAACTCCTG CCTTACTCAG GATCTTCTTC 
CATGACTGT 

Retrieve as FASTA  
CDS
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
TTTTGCATTA GTAATCTTGT TATTTATTTT TCAAGCATTG CTTATCCTTG CATTACTCTG GGTAAAAAGT AAGCTTTCTT GAATGTTTCC TCCTTGGCAC CTCCTCCAAT TGTGGATGGA  CTTTCATGGG ATTTCTATAG GACAAGTTGT CCCATGCTTG AAGGGATAGT GAGCAAGCAT CTCCAGAAGG TGTTAAAGAA GGACAATGGT CCAACTCCTG CCTTACTCAG GATCTTCTTC 
CATGACTGT 

Retrieve as FASTA