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Entry information : GmPrx[P]171 ( Glyma08g19190.1)
Entry ID 9036
Creation 2011-07-04 (Qiang Li)
Last sequence changes 2011-12-14 (Qiang Li)
Sequence status theoretical translation / pseudogene
Reviewer Christophe Dunand
Last annotation changes 2016-01-12 (Christophe Dunand)
Peroxidase information: GmPrx[P]171 ( Glyma08g19190.1)
Name (synonym) GmPrx[P]171 ( Glyma08g19190.1)
Class Class III peroxidase     [Orthogroup: Prx005]*
Taxonomy Eukaryota Viridiplantae Streptophyta Fabaceae Glycine
Organism Glycine max (soybean)    [TaxId: 3847 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value GmPrx[P]171
start..stop		 S start..stop
GmPrx256 233 6.37e-77 1..138 1..143
GmPrx256 107 2e-28 103..195 221..298
GmPrx170 210 7.2e-68 1..127 1..130
GmPrx170 72 0.00000000000000282 130..196 234..302
GmPrx05 209 1.13e-67 1..136 1..139
GmPrx05 72 0.00000000000000384 130..195 234..301
AhPrx05 194 9.57e-62 7..138 12..148
AhPrx05 91 3.52e-22 103..195 227..306
Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '9036' 'join(14481579..14481964,14482028..14482279)' Exons►
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 14481579..14481964 384 N° 2 14482028..14482279 250  
join(14481579..14481964,14482028..14482279)


exon

Literature and cross-references GmPrx[P]171 ( Glyma08g19190.1)
DNA ref. Phytozome 12:   Gm08 (14481579..14482279)
Protein sequence: GmPrx[P]171 ( Glyma08g19190.1)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   212 (190)
PWM (Da):   %s   23050.76 (20729.5) Transmb domain:   %s   i5-27o
PI (pH):   %s   7.84 (7.83) Peptide Signal:   %s   cut: 23 range:23-212
Sequence
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Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MEGRSSLVFILLALAIVNTVHGTRVGFYSSACPRAEFIVRSTVQSHVRSxDPTMAAGLLRIHFDDCFVQGCDASVLIAGDATERTAFANLGLRGYEVIDDAKTQLEAACPGVVSCADILA
LAARDSVSLAKQWRFKSGGQNRFDISYLANLRIGHGILQSDQALWNDPSTKSFVQRYLQDGFKGLLFNVEFAKSMFCHQLAIVHVKINLYMA

Retrieve as FASTA  
Remarks Pseudogene from genomic. Incorrect prediction from phytozome (Long sequence in frame is missing, 3' end is missing and Gaps in frame which can't be found).
DNA ►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGAGGGACGTAGTTCACTGGTGTTTATTTTACTTGCTTTGGCCATTGTGAACACAGTACATGGGACGCGTGTAGGGTTCTATTCGAGTGCATGCCCACGCGCAGAGTTCATTGTTAGG
TCCACAGTTCAATCCCACGTTAGGTCTCTNGATCCTACCATGGCTGCCGGGTTGCTTCGTATTCACTTCGATGATTGCTTTGTGCAAGGTTGCGACGCTTCTGTTCTCATTGCCGGTGAT
GCCACTGAGAGAACAGCATTTGCAAACCTTGGTTTGAGAGGATACGAGGTTATTGATGATGCAAAGACACAGCTCGAGGCTGCGTGCCCCGGTGTTGTGTCATGTGCTGATATTCTTGCT
CTTGCAGCTCGTGATTCCGTTTCTCTCTGGTAGTACATAACTCCAAACTATCAAATATCAATGTTTGAATTTATTATCTATTAACTCTGCCCGCAAAACAGTGGCGGTTCAAATCGGGTG
GTCAAAACAGATTTGACATATCTTACTTGGCTAATTTGAGGATTGGCCATGGAATTCTGCAGTCTGATCAAGCGCTTTGGAATGATCCTTCCACAAAGTCATTTGTACAAAGGTACCTGC
AGGACGGCTTCAAAGGTTTGCTTTTCAACGTGGAATTTGCAAAGTCTATGTTCTGCCATCAACTAGCTATAGTGCATGTTAAAATAAATTTGTACATGGCTTA

Retrieve as FASTA  
CDS►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGAGGGACGTAGTTCACTGGTGTTTATTTTACTTGCTTTGGCCATTGTGAACACAGTACATGGGACGCGTGTAGGGTTCTATTCGAGTGCATGCCCACGCGCAGAGTTCATTGTTAGG
TCCACAGTTCAATCCCACGTTAGGTCTCTNGATCCTACCATGGCTGCCGGGTTGCTTCGTATTCACTTCGATGATTGCTTTGTGCAAGGTTGCGACGCTTCTGTTCTCATTGCCGGTGAT
GCCACTGAGAGAACAGCATTTGCAAACCTTGGTTTGAGAGGATACGAGGTTATTGATGATGCAAAGACACAGCTCGAGGCTGCGTGCCCCGGTGTTGTGTCATGTGCTGATATTCTTGCT
CTTGCAGCTCGTGATTCCGTTTCTCTCGCAAAACAGTGGCGGTTCAAATCGGGTGGTCAAAACAGATTTGACATATCTTACTTGGCTAATTTGAGGATTGGCCATGGAATTCTGCAGTCT
GATCAAGCGCTTTGGAATGATCCTTCCACAAAGTCATTTGTACAAAGGTACCTGCAGGACGGCTTCAAAGGTTTGCTTTTCAACGTGGAATTTGCAAAGTCTATGTTCTGCCATCAACTA
GCTATAGTGCATGTTAAAATAAATTTGTACATGGCTTA

Retrieve as FASTA