Entry information : GmPrx[P]268 (Glyma15g21530.1)
Entry ID 9045
Creation 2011-07-04 (Qiang Li)
Last sequence changes 2011-12-14 (Qiang Li)
Sequence status theoretical translation / pseudogene
Reviewer Not yet reviewed
Last annotation changes 2011-11-28 (Qiang Li)
Peroxidase information: GmPrx[P]268 (Glyma15g21530.1)
Name (synonym) GmPrx[P]268 (Glyma15g21530.1)
Class Class III peroxidase     [Orthogroup: Prx009]*
Taxonomy Eukaryota Viridiplantae Streptophyta Fabaceae Glycine
Organism Glycine max (soybean)    [TaxId: 3847 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value GmPrx[P]268
start..stop
S start..stop
GmPrx307 422 5e-151 1..246 31..276
GmPrx234 387 3e-137 1..246 28..270
LjPrx31 356 9e-125 1..254 32..286
PvPrx02 353 1e-123 1..245 28..271
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 19805847..19806608 762  
join(19805847..19806608)


exon

Literature and cross-references GmPrx[P]268 (Glyma15g21530.1)
DNA ref. Phytozome 12:   Gm15 (19805847..19806608)
Protein sequence: GmPrx[P]268 (Glyma15g21530.1)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   251
PWM (Da):   %s   27417.64  
PI (pH):   %s   6.33
Sequence
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Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
YNDTCPQFSQ IIRDIVTRKQ IMSPTTVIAT LRLFLHDCLL PNDCDASILL SSIAFSKVER NANINHSLPS DTFDLIIRAK AALELSCPNT ISCSNILFDA TCDLLTMLGG PFFLVFLGRC  NGQTSLAFAV SSHLSTPSMP ISQITQLFAK CGFTVEEFVA LSGAHTIEFS HCFEFVTNLS NNTSSSYNPR YAQGLQKACA DYKTNPTLSV FNDIMTSNKF YNAYL*NLPK GLGVLKSDLG 
LYGDPS**TF SSRF 

Retrieve as FASTA  
Remarks Pseudogen from genomic. Incorrect prediction from Phytozome (Stops in frame. Both 5' end and 3' end are missing).
DNA
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.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
TATAATGACA CGTGTCCACA GTTCAGCCAG ATCATTAGGG ACATAGTAAC CCGCAAGCAG ATCATGAGCC CCACCACAGT CATTGCCACC CTCCGCCTCT TCCTCCACGA CTGCCTTCTC  CCCAATGACT GCGATGCCTC CATCCTTCTC TCCTCCATCG CCTTCTCCAA GGTTGAGCGC AACGCCAACA TCAACCATTC CCTCCCAAGC GACACCTTTG ACCTCATCAT CCGTGCCAAG  GCCGCCCTCG AGCTCTCCTG CCCCAACACC ATCTCTTGCT CTAACATCCT CTTCGACGCC ACCTGCGACC TCCTGACCAT GCTCGGCGGC CCCTTCTTCC TCGTCTTCCT CGGTCGTTGC  AACGGCCAGA CCTCCCTCGC CTTCGCCGTA TCCTCCCACC TCTCCACCCC CTCCATGCCC ATCTCCCAAA TCACCCAACT CTTCGCCAAA TGCGGCTTCA CCGTCGAAGA ATTCGTCGCC  CTCAGTGGGG CCCACACCAT CGAATTCTCT CATTGCTTCG AGTTCGTCAC CAACCTCTCC AACAACACTT CCTCCTCCTA CAACCCTCGC TACGCTCAGG GGCTTCAAAA GGCTTGTGCA  GATTACAAAA CTAACCCTAC CTTATCAGTC TTCAACGATA TCATGACGTC GAACAAGTTC TATAATGCTT ACCTCTAGAA CCTTCCCAAG GGTTTGGGTG TGTTGAAATC TGACCTTGGT 
TTGTATGGTG ACCCTTCTTA ATGAACCTTC TCCTCACGTT TT 

Retrieve as FASTA  
CDS
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.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
TATAATGACA CGTGTCCACA GTTCAGCCAG ATCATTAGGG ACATAGTAAC CCGCAAGCAG ATCATGAGCC CCACCACAGT CATTGCCACC CTCCGCCTCT TCCTCCACGA CTGCCTTCTC  CCCAATGACT GCGATGCCTC CATCCTTCTC TCCTCCATCG CCTTCTCCAA GGTTGAGCGC AACGCCAACA TCAACCATTC CCTCCCAAGC GACACCTTTG ACCTCATCAT CCGTGCCAAG  GCCGCCCTCG AGCTCTCCTG CCCCAACACC ATCTCTTGCT CTAACATCCT CTTCGACGCC ACCTGCGACC TCCTGACCAT GCTCGGCGGC CCCTTCTTCC TCGTCTTCCT CGGTCGTTGC  AACGGCCAGA CCTCCCTCGC CTTCGCCGTA TCCTCCCACC TCTCCACCCC CTCCATGCCC ATCTCCCAAA TCACCCAACT CTTCGCCAAA TGCGGCTTCA CCGTCGAAGA ATTCGTCGCC  CTCAGTGGGG CCCACACCAT CGAATTCTCT CATTGCTTCG AGTTCGTCAC CAACCTCTCC AACAACACTT CCTCCTCCTA CAACCCTCGC TACGCTCAGG GGCTTCAAAA GGCTTGTGCA  GATTACAAAA CTAACCCTAC CTTATCAGTC TTCAACGATA TCATGACGTC GAACAAGTTC TATAATGCTT ACCTCTAGAA CCTTCCCAAG GGTTTGGGTG TGTTGAAATC TGACCTTGGT 
TTGTATGGTG ACCCTTCTTA ATGAACCTTC TCCTCACGTT TT 

Retrieve as FASTA