Entry information : MePrx140 ( cassava4.1_034026m)
Entry ID 9097
Creation 2011-07-01 (Qiang Li)
Last sequence changes 2011-12-01 (Qiang Li)
Sequence status partial
Reviewer Christophe Dunand
Last annotation changes 2016-02-24 (Christophe Dunand)
Peroxidase information: MePrx140 ( cassava4.1_034026m)
Name (synonym) MePrx140 ( cassava4.1_034026m)
Class Class III peroxidase     [Orthogroup: Prx011]*
Taxonomy Eukaryota Viridiplantae Streptophyta Euphorbiaceae Manihot
Organism Manihot esculenta (cassava)    [TaxId: 3983 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value MePrx140
start..stop
S start..stop
MePrx122 261 5e-89 1..132 211..343
RcPrx10 217 6e-72 1..132 195..327
RcPrx62 202 5e-66 1..132 195..328
MePrx106 200 3e-65 1..132 195..328
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 228403..228798 396  
join(228403..228798)


exon

Literature and cross-references MePrx140 ( cassava4.1_034026m)
DNA ref. Phytozome 12:   scaffold01828 (228403..228798)
Protein sequence: MePrx140 ( cassava4.1_034026m)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   132
PWM (Da):   %s   14208.19  
PI (pH):   %s   8.05
Sequence
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Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
HTIRIDHCFV IANRLYNFSG RGDTDPSLDP AFAAQLKTKC KPGDTTTVVD MDPGSPKLFD DNYYTVVARR GLFQSDAALL NDIQTRAYVT LQAATNGITF ARDFGASMVK LGNVGVLTGS 
QGEIRKQCAL VN 

Retrieve as FASTA  
Remarks Partial sequence from genomic (chromo 13, 3 introns). Exon 1 is missing and frame shift in exon 2.
22480324..22525584
DNA
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.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
CACACCATTA GAATTGACCA TTGCTTTGTA ATCGCAAATC GTTTGTACAA TTTCAGTGGG AGAGGCGACA CGGACCCATC ATTGGACCCA GCATTTGCAG CCCAATTGAA GACGAAATGT  AAGCCTGGAG ACACCACCAC TGTCGTAGAT ATGGACCCTG GAAGCCCCAA ATTATTCGAT GACAATTATT ACACAGTTGT AGCTAGGAGA GGGCTCTTCC AATCTGATGC AGCTCTTCTC  AACGATATCC AAACAAGAGC TTATGTCACA TTGCAAGCTG CAACCAATGG AATCACTTTC GCTCGAGATT TTGGTGCGTC AATGGTGAAA CTAGGCAACG TTGGAGTCCT CACTGGCAGC 
CAAGGTGAAA TCAGGAAACA GTGTGCCCTA GTAAAT 

Retrieve as FASTA  
CDS
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
CACACCATTA GAATTGACCA TTGCTTTGTA ATCGCAAATC GTTTGTACAA TTTCAGTGGG AGAGGCGACA CGGACCCATC ATTGGACCCA GCATTTGCAG CCCAATTGAA GACGAAATGT  AAGCCTGGAG ACACCACCAC TGTCGTAGAT ATGGACCCTG GAAGCCCCAA ATTATTCGAT GACAATTATT ACACAGTTGT AGCTAGGAGA GGGCTCTTCC AATCTGATGC AGCTCTTCTC  AACGATATCC AAACAAGAGC TTATGTCACA TTGCAAGCTG CAACCAATGG AATCACTTTC GCTCGAGATT TTGGTGCGTC AATGGTGAAA CTAGGCAACG TTGGAGTCCT CACTGGCAGC 
CAAGGTGAAA TCAGGAAACA GTGTGCCCTA GTAAAT 

Retrieve as FASTA