View Redoxidase 9327

Entry information : RcAPx01 (29805.m001492)

Entry ID	9327
Creation	2011-06-30 (Qiang Li)
Last sequence changes	2012-01-04 (Qiang Li)
Sequence status	complete
Reviewer	Not yet reviewed
Last annotation changes	2011-12-02 (Qiang Li)

Peroxidase information: RcAPx01 (29805.m001492)

Name (synonym)

RcAPx01 (29805.m001492)

Class

Ascorbate peroxidase [Orthogroup: APx019]

Taxonomy

Eukaryota Viridiplantae Streptophyta Euphorbiaceae Ricinus

Organism

Ricinus communis [TaxId: 3988 ]

Cellular localisation

N/D

Tissue type

N/D

Inducer

N/D

Repressor

N/D

Best BLASTp hits

Perox	score	E-value	RcAPx01 start..stop	S start..stop
PtriAPx02	361	7.16e-128	1..248	1..250
CclAPx05	360	2.03e-127	1..248	1..250
CsAPx02	358	5.88e-127	1..248	1..250
CroAPx02	356	8.32e-126	1..248	1..250

Gene structure Fichier

Exons►

Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size
N° 1	117870..117988	117	N° 2	117614..117788	173	N° 3	117489..117548	58	N° 4	117306..117363	56
N° 5	117097..117154	56	N° 6	116934..117027	92	N° 7	116480..116584	103	N° 8	116314..116372	57
N° 9	116208..116226	17
complement(join(116208..116226,116314..116372,116480..116584,116934..117027,1170 97..117154,117306..117363,117489..117548,117614..117788,117870..117988))

Literature and cross-references RcAPx01 (29805.m001492)

DNA ref.	Phytozome 12: 29805 (117988..116208)

Protein sequence: RcAPx01 (29805.m001492)

Sequence Properties
first value : protein
second value (mature protein)

Length (aa):	248
PWM (Da):	27414.32
PI (pH):	6.4

Sequence
Send to BLAST
Send to Peroxiscan

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

MGKSYPKVSEEYQKAVEKCRRKLRGLIAEKHCAPIILRLAWHAAGTFDVSTRTGGPFGTIRHPLELAHEANNGLDIAVKLLEPIKQQFPILTYADFYLAGVVTVTGGSEIPFHPGRPDKT
DPPPEGRLPDATKGQSLTKILLHYLVVRPCYVYIAREGVTWSALDLRDPGLATPSFFITPISSKSNRELLSGEKEGLIQLPSDKALLQDPVFRPLVEKYAADEDAFFEDYEEAHLKLSELGFADAE

Retrieve as FASTA

Remarks

Complete sequence from genomic.

DNA ►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

ATGGGGAAGAGCTACCCGAAGGTGAGCGAAGAGTATCAGAAAGCAGTTGAGAAATGCAGGAGGAAGCTTAGAGGACTCATTGCTGAGAAGCACTGTGCTCCAATAATCCTTCGCTTAGCG
TAACATCTCCACCTTCTACAAGACTCCATGTGGGTGAGTTTTTAAGAGGCTCGTGTATTAGTTTATATGGTTTGTTGCAGATATGGCATGCTGCAGGTACTTTTGATGTCAGTACAAGAA
CAGGTGGGCCGTTTGGGACGATCAGGCACCCACTTGAGCTTGCTCACGAGGCAAATAATGGTCTTGATATTGCTGTCAAACTTCTTGAACCTATCAAGCAGCAATTTCCTATTTTAACTT
ATGCCGACTTCTATCAGGTATTTATAGCTCTTCAAGTATTTTGGCTGTTAACAATATGAACATATGATTACAATTTTTACAGTTTTAGCTGGAGTTGTAACAGTTACAGGAGGGTCTGAG
ATTCCTTTCCATCCAGGGAGACCTGTTTGTAATCAGCTACTCGCCGCTGAGACTTTATTTATTGTTCTTATATGTGTCTGACTGCCTATTTGGATCACCATATCTGACATCTGAAGCAAA
GATAAAACTAAATTCTTGTGTTGATACAGGAGACAAAACTGATCCTCCTCCAGAAGGTCGCTTACCTGATGCTACTAAAGGTCAGTCTTTCTTTTTTCTTTTTTCTTTTTTCTTTTTTTA
AGTCAAATGCTCAACATAAAATCATTACAGCGCATAACTGTAACTAAAGTCTATATATATAAGTTGTCTTGCTTTGGGTTCTGATCATCTTAGGGACGTCTTCGGTCGAATGGGTCTTAG
TGTGACAAAGATATTGTTGCATTATCTGGTGGTCAGACCTTGCTACGTATATATTGCTAGGTGAGAAATGAGACAAGAATCCTGGCAAATGCCATACATCTTGATCAATGCTCTTGGTTT
TTGCTGCAGGGGGAAGGTGTCACATGGAGCGCTCTGGATTTGAGGGACCCTGGACTAGCAACCCCCTCATTTTTTATAACTCCTATTTCAAGCAAGTCTAATTTCATCTCCATTGATAAT
CGGTAATCTTTCTTTCTTAAAGTTAATTGCCTTAGTCTCTTCTCTTATGTATGTTTATGCATGATGCTCTTGGGTAACTGTATTATTAGAACAACTCTTCATTTGAAATATAATGAGCAG
ATTATTGTTGTGAATCTGGACTCTTCAAGGTTGATTGTATGATTAAACGCAAGATCTCAATTAAGTTACATTTCCCAATTAATATATGTAGACAGCTCTGTATTTGGATCAAGTAAAGTT
GTGCTCAACTGTTTGGAGTTTAATCCCACAGGCCTTCGCATCATTGCATGTTTGAAAGTTAAAATAAGCGATATCAATTTTGATACTGTTAATCAGAGGGAACTCTTGAGTGGAGAAAAA
GAAGGCCTCATTCAGCTGCCGTCAGACAAGGCTCTTCTGCAAGATCCAGTCTTCCGTCCTCTAGTTGAAAAATATGCTGCCGTGAGTATTTAGCTATATATACAATTTCTTCGCAGCCGT
TAGCTACATACATCCCGTCAGGTGTAATTATTTAAACTCTGATTGTTATGGTGGTTGCTCTTTATCAGGAGATGAGGATGCGTTCTTTGAAGATTATGAAGAAGCTCATTTGAAGCTCTC
AGAACTTGGGTAAGCAAAAGATTTTATTTTGTCCTCTTTATTTGCTTTGTTGTTACTTATTCTGAAGTTAACTTAATTTGTCTCCTTTTACTTCAGATATTCGCTGATGCTGAATGA

Retrieve as FASTA

CDS►
Send to BLAST