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Entry information : RcAPx06 (29908.m006074)
Entry ID 9332
Creation 2011-06-30 (Qiang Li)
Last sequence changes 2011-10-03 (Qiang Li)
Sequence status partial
Reviewer Qiang Li
Last annotation changes 2012-01-04 (Qiang LI)
Peroxidase information: RcAPx06 (29908.m006074)
Name (synonym) RcAPx06 (29908.m006074)
Class Ascorbate peroxidase     [Orthogroup: APx004]*
Taxonomy Eukaryota Viridiplantae Streptophyta Euphorbiaceae Ricinus
Organism Ricinus communis    [TaxId: 3988 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value RcAPx06
start..stop		 S start..stop
MeAPx02 268 5.49e-90 1..186 1..186
MeAPx02 115 7.02e-31 187..244 292..349
PtAPx10 268 1e-89 1..186 1..184
PtAPx10 115 8.45e-31 187..244 290..347
CclAPx01 255 7e-85 1..186 1..186
CclAPx01 110 7.21e-29 187..244 292..349
VvAPx07 254 1.09e-84 1..186 1..181
VvAPx07 112 1.43e-29 187..244 287..344
Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '9332' 'complement(join(1465064..1465171,1465293..1465357,1465510..1465640,1465952..1465992,1466124..1466189,1466303..1466337,1466423..1466507,1466765..1466863,1467015..1467116))' Exons►
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 1467015..1467116 100 N° 2 1466765..1466863 97 N° 3 1466423..1466507 83 N° 4 1466303..1466337 33
N° 5 1466124..1466189 64 N° 6 1465952..1465992 39 N° 7 1465510..1465640 129 N° 8 1465293..1465357 63
N° 9 1465064..1465171 106  
complement(join(1465064..1465171,1465293..1465357,1465510..1465640,1465952..1465 992,1466124..1466189,1466303..1466337,1466423..1466507,1466765..1466863,1467015. .1467116))


exon

Literature and cross-references RcAPx06 (29908.m006074)
DNA ref. Phytozome 12:   29908 (1467116..1465064)
Protein sequence: RcAPx06 (29908.m006074)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   244
PWM (Da):   %s   26767.69  
PI (pH):   %s   5.14
Sequence
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MGVTFLSTIPSLVHLSSLSNPTTSTVTHRLPPRAGPICGIKNETDVTSENDFLRRDVLKCFGATIGMELITSSGSFVEMAYAADLIQRRQRSEFQSNIKGTLYTALEKPELVPSILTLAL
NDAMTYDKASKSGGPNGSIRFSSEISRPENEGLAAALNMLEEAKEEIDSYSKGGPISFADLIQCDVLPWVQKYQRSRETVSQTDYEVDLITTLTKLSSLGQQINYEAYTYPVRKIDVTKL
K

Retrieve as FASTA  
Remarks Partial sequence from genomic. Incorrect prediction from phytozome (A long sequence in frame is missing which can not be found).
DNA ►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGGGGTGACTTTCCTCTCAACTATCCCTTCTCTTGTTCATCTCTCATCTCTAAGCAACCCCACCACCAGTACTGTCACTCATAGACTCCCTCCTCGTGCTGTAAGCTTATCTCATCTC
TGCCTTCAGATGCTTCTTTTCACTTACAAAGAAAATGCGAGTTCATATTTAGATGTATGTATATAATATAATACTATTGCAGCTAAGCATAATCAAGAAACCATTTCTGTTGTTTTTGAA
CATGTGTCAACAGGGGGTCCTATTTGTGGCATTAAGAATGAGACCGATGTTACTAGTGAAAATGATTTCCTTCGAAGAGATGTTTTAAAATGCTTCGGTGCTACCATTGGCATGGTAAGA
CCAGATTTTCCCTTTCTTTTCTGTGGCCTGTTTCTGCATTTGTATATATTAATAATCTAGCATTCCATTTTATTAGTTCCTATATTAAAAAGAATGATTCTTCTCCATCAATCTATGTGA
AAACTTGTGGACTAATTGTTACATTTGTAAAAGGGAGAAAAAATCTAGCTAGGCATTTTCAAGATATATGGAAATTCCTTGATTTTGAATGATGTGATGATGAGTTTCTACCAGTTGTGA
TATCACCTTAGGAGAACTAATAACAAGCTCTGGATCATTTGTCGAAATGGCTTATGCTGCTGATTTGATTCAACGCAGACAGCGTTCTGAGTTTCAGTGTAAGTCATCTAAACACTTTTC
TTTAAATTTCCTTGCTAGAAACCACCTATAATCTTCTCAACTGAAGCTGATTCATTTTTACAGCACAAATATTAAGGGGACCCTTTACACAGCGTTAAAGGTAAATCTTATTTTCCTGCA
ACAATGCCTTCTCTTTTTGTCATATACCTGTTTTATGCTTCATACAAGGAAACCACTTGTTACTACTTTGTCGTGCTTCCTTTGTGTTTGCAGGAGAAAAACCTGAACTTGTCCCATCAA
TACTAACTCTGGCACTAAATGATGCCATGACTTATGATAAGGTCAGACCTGAAACTCTACCTGTTAAAATATTTATCTTCAGGTTATGGAAGTCCTTTACTTTCTGTATAAGAGAAAAAG
CGAACAAAATCTCTATATATATATATATACACTGATTTCTTTCTGATTGCAGGCGCTTCCAAATCTGGGGGCCCAAATGGATCCATACGTTTCAGGTATCTACTACATGAAGTATTACTC
TCATATGATTTGGAACAATAATTAGTTGGAAGTATGAATGACGATATCGGATTTGTGCATATTTTTACTGTTACAAAGCCTCACAACTTGCGGTTTTTCTGAAGTAACTTGATAGTATGA
AGAGATTTCAATTCATGCTTGTTTTCTAGCTTTTCAAAGTTCATTATAATACATGCTTTTCTCCTTTGACTTATCAACTAATTCATTTTATGCAATTTTGAAGAATTATCCTTCTTTCTT
TTTCAACAGCTATCTTAATTTTCTTGTCTTTCTTTCCTGCTTGAAGTTTTCAGAGATAAGCAGACCTGAAAACGAGGGACTTGCTGCAGCTTTGAATATGTTAGAGGAAGCAAAGGAGGA
GATAGATTCATATTCGAAGGGTGGACCCATCTCCTTTGCAGATCTTATCCAATGTGCAGGTTCTACATGTTAAATCCACCAAGTTTCAGACCTGCTGCATGTAATGGCCATTTGCAGGAG
CTATTATATGCAGATATCAAAATATATTTGTCTAATTCATGTTCTTCGTTTTAGCAGCACAAAGCGCGGNNNTTACTGGCCACTGACCCAGATATGTTTTGCCATGGGTTCAGAAGTACC
AGCGTAGTCGAGAAACTGTCTCTCAGACAGATTATGAGGTTAGTACTTCAAAGTGAGCAAAGATCAAAGTCTGAAATTCGAGATTTATGATTCTTGGGCATATCTATATATTGCTTTGCT
TTTCTTATTTTTATAGTACCTAAATTGATTCAATTTCAGGTGTTGACCTGATAACTACTCTCACCAAATTAAGTTCCTTGGGCCAACAAATCAATTATGAAGCATACACATATCCTGTCC
GAAAGATAGATGTGACCAAACTCAAATTA

Retrieve as FASTA  
CDS►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGGGGTGACTTTCCTCTCAACTATCCCTTCTCTTGTTCATCTCTCATCTCTAAGCAACCCCACCACCAGTACTGTCACTCATAGACTCCCTCCTCGTGCTGGTCCTATTTGTGGCATT
AAGAATGAGACCGATGTTACTAGTGAAAATGATTTCCTTCGAAGAGATGTTTTAAAATGCTTCGGTGCTACCATTGGCATGGAACTAATAACAAGCTCTGGATCATTTGTCGAAATGGCT
TATGCTGCTGATTTGATTCAACGCAGACAGCGTTCTGAGTTTCAGTCAAATATTAAGGGGACCCTTTACACAGCGTTAAAGGAAAAACCTGAACTTGTCCCATCAATACTAACTCTGGCA
CTAAATGATGCCATGACTTATGATAAGGCTTCCAAATCTGGGGGCCCAAATGGATCCATACGTTTCAGTTCAGAGATAAGCAGACCTGAAAACGAGGGACTTGCTGCAGCTTTGAATATG
TTAGAGGAAGCAAAGGAGGAGATAGATTCATATTCGAAGGGTGGACCCATCTCCTTTGCAGATCTTATCCAATGTGCAGATGTTTTGCCATGGGTTCAGAAGTACCAGCGTAGTCGAGAA
ACTGTCTCTCAGACAGATTATGAGGTTGACCTGATAACTACTCTCACCAAATTAAGTTCCTTGGGCCAACAAATCAATTATGAAGCATACACATATCCTGTCCGAAAGATAGATGTGACC
AAACTCAAATTA

Retrieve as FASTA