Entry information : RcPrx08 (28295.m000014)
Entry ID 9339
Creation 2011-06-30 (Qiang Li)
Last sequence changes 2011-10-03 (Qiang Li)
Sequence status partial
Reviewer Qiang Li
Last annotation changes 2012-01-04 (Qiang LI)
Peroxidase information: RcPrx08 (28295.m000014)
Name (synonym) RcPrx08 (28295.m000014)
Class Class III peroxidase     [Orthogroup: Prx006]*
Taxonomy Eukaryota Viridiplantae Streptophyta Euphorbiaceae Ricinus
Organism Ricinus communis    [TaxId: 3988 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value RcPrx08
start..stop
S start..stop
CpapPrx03 291 1e-99 1..207 141..347
HbPrx01 286 1e-97 1..207 139..346
CpapPrx05 283 2e-96 1..207 141..347
RcPrx12 280 2e-96 1..207 65..271
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 7109..7277 169 N° 2 8079..8530 452  
join(7109..7277,8079..8530)


exon

Literature and cross-references RcPrx08 (28295.m000014)
DNA ref. Phytozome 12:   28295 (7109..8530)
Protein sequence: RcPrx08 (28295.m000014)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   207
PWM (Da):   %s   21994.85  
PI (pH):   %s   4.29
Sequence
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
SGGPSWTNQLGRRDARTASRAQANLSLPSPFETLDQLKQKFLDVGLNDNVDLVALSGGHTFGRAQCFTFSQRLVDFNGTGAPDTSLNTTYGDTLRALCPVNGTPSVLTDLDSATPDAFDNRYFSNLLSGKGLLQSDQELFSTPGADTAGIVTNFSTSQTAFFESFVVSMIRMGNLSVLTGTDGEVRLNCRVVNPPLAEDDNLLVSS

Retrieve as FASTA  
Remarks Patial sequence from genomic. Incorrect prediction from phytozome (Long 5' end is missing due to NNNNN in NDA and short 3' end is missing which has been completed manully).
DNA
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
TCGGGAGGTCCTTCATGGACTAATCAACTAGGAAGAAGAGATGCCAGAACAGCAAGCAGAGCTCAAGCTAATCTTTCTCTTCCAAGTCCCTTTGAAACCCTTGATCAGCTGAAACAAAAG
TTTTTAGATGTTGGTCTCAACGACAACGTCGATCTGGTTGCGTTATCTG
GTAACTATATTTGAACTATGCTTAGTTATTTTCAATTTAACGGTCAGACGAGATGCAGCCATGGGCAATCA
CAATTTAAACTCTAAACCTTTTCTAGTTTGAGACTATCTGATACCATGTCAAATGATAAATCCATCCGAAAATCTAAGTGTTTATAATAGTTTTGGTACATCTAACAATCTTAAACAATA
AAATAAGATCTTCTAACATTTATAGAAACGGGAGAGATCAATTAGCATAGTTTGCTACTTGGGTTGATGGAAAGGAGTGTGATGAATTATTGTTATAACCTTTTTTTTAATTGGTCTTTT
AAAACTTTATACAAAACTTATTAATTATGGGAAAATTATTGAGTTTAAAGCGTATATTTCTATTTATACACTGATTGACATATTTATTAGTATTAGTTTAAATAATGAAGTTTGTATCGA
TCATATAGAACACTCATATTTACGTATCACTTTTCTTATTAGTAGTTATATATACATTAAGTCTAAGTAAAAATCTCTTTTAATTATATCCGATGTATTTTATATTTGTAGATGTGACAT
GGTATACTGTGTGAATTAAAAGTAATATTTAACCTGCTATAGTAAGTTAACAATAATTAAGGAGTTACCACTTGAGAAAGTTACAAGTCAATTTTTCTTGTTTTTGTTACTTATTTAGCA
AGTAATACTTAATAGATTTTAATAGTTAAGATTAAAAGTTGGATATCTAAAGATTATAATTTATATAAGGAGGGACATATATATATATATAAGTGATTATTAATGATTATTTTCTCTTCT
TCGTTTTAAGGTGGTCATACATTTGGAAGAGCTCAATGCTTTACTTTCAGCCAGCGTCTAGTCGATTTCAATGGTACTGGTGCTCCAGACACATCATTGAACACAACTTATGGAGATACA
CTTCGAGCATTGTGCCCTGTAAATGGAACTCCAAGTGTCTTGACCGACCTTGATTCAGCAACACCTGACGCATTTGACAACAGATATTTCTCAAATCTTCTGAGTGGCAAAGGCCTTCTG
CAAAGTGATCAAGAACTGTTCTCAACTCCTGGTGCTGATACTGCTGGCATTGTCACCAACTTTAGCACTAGCCAAACTGCTTTCTTTGAGAGCTTCGTGGTTTCCATGATCAGGATGGGA
AATCTCAGTGTCTTGACAGGCACTGATGGGGAGGTCAGGCTGAATTGCAGAGTTGTTAATCCACCTCTAGCTGAAGATGATAACCTTCTTGTCAGCTCAATG

Retrieve as FASTA  
CDS
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
TCGGGAGGTCCTTCATGGACTAATCAACTAGGAAGAAGAGATGCCAGAACAGCAAGCAGAGCTCAAGCTAATCTTTCTCTTCCAAGTCCCTTTGAAACCCTTGATCAGCTGAAACAAAAG
TTTTTAGATGTTGGTCTCAACGACAACGTCGATCTGGTTGCGTTATCTG
GTGGTCATACATTTGGAAGAGCTCAATGCTTTACTTTCAGCCAGCGTCTAGTCGATTTCAATGGTACTGGT
GCTCCAGACACATCATTGAACACAACTTATGGAGATACACTTCGAGCATTGTGCCCTGTAAATGGAACTCCAAGTGTCTTGACCGACCTTGATTCAGCAACACCTGACGCATTTGACAAC
AGATATTTCTCAAATCTTCTGAGTGGCAAAGGCCTTCTGCAAAGTGATCAAGAACTGTTCTCAACTCCTGGTGCTGATACTGCTGGCATTGTCACCAACTTTAGCACTAGCCAAACTGCT
TTCTTTGAGAGCTTCGTGGTTTCCATGATCAGGATGGGAAATCTCAGTGTCTTGACAGGCACTGATGGGGAGGTCAGGCTGAATTGCAGAGTTGTTAATCCACCTCTAGCTGAAGATGAT
AACCTTCTTGTCAGCTCAATG

Retrieve as FASTA