View Redoxidase 9353

Entry information : RcPrx25 (29726.m003967)

Entry ID	9353
Creation	2011-06-30 (Qiang Li)
Last sequence changes	2011-10-03 (Qiang Li)
Sequence status	partial
Reviewer	Qiang Li
Last annotation changes	2012-01-04 (Qiang LI)

Peroxidase information: RcPrx25 (29726.m003967)

Name (synonym)

RcPrx25 (29726.m003967)

Class

Class III peroxidase [Orthogroup: Prx013]*

Taxonomy

Eukaryota Viridiplantae Streptophyta Euphorbiaceae Ricinus

Organism

Ricinus communis [TaxId: 3988 ]

Cellular localisation

N/D

Tissue type

N/D

Inducer

N/D

Repressor

N/D

Best BLASTp hits

Perox	score	E-value	RcPrx25 start..stop	S start..stop
MePrx88	330	4.92e-115	7..196	1..190
MePrx88	81	2.15e-18	194..238	276..320
MePrx127	330	1.62e-114	1..196	1..195
MePrx127	78	4.08e-17	170..237	257..324
LePrx91	301	3.59e-103	6..196	5..195
LePrx91	82	2.13e-18	170..237	257..324
EtPrx02	293	4.2e-102	28..196	6..174

Gene structure Fichier

Exons►

Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size
N° 1	477633..477848	214	N° 2	477143..477334	190	N° 3	476754..476923	168	N° 4	476365..476500	134
complement(join(476365..476500,476754..476923,477143..477334,477633..477848))

Literature and cross-references RcPrx25 (29726.m003967)

DNA ref.	Phytozome 12: 29726 (477848..476365)

Protein sequence: RcPrx25 (29726.m003967)

Sequence Properties
first value : protein
second value (mature protein)

Length (aa):	238 (220)
PWM (Da):	25787.4 (23766.3)	Transmb domain:	o5-27i
PI (pH):	8.32 (8.21)	Peptide Signal:	cut: 19 range:19-238

Sequence
Send to BLAST
Send to Peroxiscan

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

MKSSLVLLLLFCVALVYQVGVCCGGGLRKNFYKDTCPQAEGIVRS
IIWKRVSANSTLPAKLLRMHFHDCFVRGCDASVLLDSTPKNSAEKAAIPNLSLGGFDVIDEVKSKLETTCPGVVSCADIVALAARDSVSFQFKKPIWEVLTGRRDGLISRASEALADIPSPFFNFSLLKQSFANKSLTVHDLVVLSGYDIIDELLDSGKFFTEFAQSMKRMGAIDVLTGSAGEIRKKCNVVN

Retrieve as FASTA

Remarks

Partial sequence from genomic. Incorrect prediction from phytozome (A long sequence in frame is missing due to 'NNNN' and bad sequencing).

DNA ►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

ATGAAGAGTAGCTTAGTTCTGCTGTTGTTGTTCTGTGTTGCATTAGTGTATCAAGTAGGAGTTTGCTGTGGAGGGGGATTAAGAAAAAACTTTTACAAGGATACTTGTCCTCAAGCTGAG
GGTATTGTAAGGAGTATCATTTGGAAACGTGTCTCTGCCAATTCGACATTGCCTGCAAAGCTTTTAAGGATGCATTTTCACGACTGTTTTGTCAGGGTAAACATATATATATATATACAT
ATATTATTGCTATAGAAAATTAACTGGTGTTAGAACTTATTTGGTTAAAAGTGAAATACTAACATATGCCTCACAGAAAATAATTATTTTATATAATAAATTATTACGCCTGTATATGTT
ATTCCTTGTGTACGTAAGTTATACTCACACACAGAAGCAGATTATAAGAAAAGAGTATATGTGCACATTCAATCTCCCCATATTGGGTTAAATATATTATCTTGAATAACAACAATAGAT
ATGAATATTTTTTGTTATGGCTATGCTTTGGCAGGGGGCTGTGATGCATCCGTATTGCTGGATTCCACACCCAAGAACTCAGCTGAAAAGGCAGCAATTCCAAACCTGTCTCTAGGAGGT
TTCGATGTCATAGATGAGGTGAAGAGCAAGCTAGAGACGACATGCCCTGGAGTTGTCTCTTGTGCAGATATTGTTGCTCTAGCTGCTAGAGATTCTGTTTCCTTCCAAGTAAGTTAATTC
TATATTTTTTAAACTAACTAGTAAACTGTGTATGTCAGAGATACTAAATTATTTATTATACATGTGGTTCAAACTACTAATTCTTAGTCCAGTGGCCAAAGACGAGCTAGTTCTAATCGA
GTCCCACCCTTCTTTCCCCAATATACTTCTAAGCAAAATTCTTTATCTAATTTGCATGATTTGGTTTTGGTTGTTTGGTGATTGCAGTTTTTAAAAAGCCAATTTGGGAAGTGCTAACTG
GTAGAAGAGATGGATTAATTTCCAGAGCATCGGAGGCTCTAGCGGATATCCCTTCACCTTTCTTTAATTTTTCCCTTCTCAAACAGTCTTTTGCCAACAAAAGCTTAACGGTCCATGACC
TTGTCGTTTTATCAGGTTAGTAATAAGTATAATATACTCAATCTATCACGATATTTATAGAAAAATTGAATTAAATATTAATGAGTAATTCAAAGTTAATTAATTACGGACACAGCTACT
ACATACCAATTAGACTACTAATTGATGTTTAAGTCATAATTTTTATTAATAATTTTTGGTCAGGTGGACACACCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNGCTCAGCGCGATATCATTGACGAGTTGCTTGATTCAGGCAAGTTCTTCACCGAGTTTGCACAATCCATGAAGAGGATGGGAGCAATTGACGTGC
TCACTGGGAGTGCTGGAGAAATTAGGAAGAAATGTAATGTGGTGAATTCT

Retrieve as FASTA

CDS►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

Retrieve as FASTA