The peroxidases and oxidases database
Entry information : RcPrx25 (29726.m003967)
Entry ID 9353
Creation 2011-06-30 (Qiang Li)
Last sequence changes 2011-10-03 (Qiang Li)
Sequence status partial
Reviewer Qiang Li
Last annotation changes 2012-01-04 (Qiang LI)
Peroxidase information: RcPrx25 (29726.m003967)
Name (synonym) RcPrx25 (29726.m003967)
Class Class III peroxidase     [Orthogroup: Prx013]*
Taxonomy Eukaryota Viridiplantae Streptophyta Euphorbiaceae Ricinus
Organism Ricinus communis    [TaxId: 3988 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value RcPrx25
start..stop		 S start..stop
MePrx88 330 5e-115 7..196 1..190
MePrx88 81 2e-18 194..238 276..320
MePrx127 330 2e-114 1..196 1..195
MePrx127 78 4e-17 170..237 257..324
LePrx91 301 4e-103 6..196 5..195
LePrx91 82 2e-18 170..237 257..324
EtPrx02 293 4e-102 28..196 6..174
Gene structure Fichier Exons►
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 477633..477848 216 N° 2 477143..477334 192 N° 3 476754..476923 170 N° 4 476365..476500 136
complement(join(476365..476500,476754..476923,477143..477334,477633..477848))


exon

Literature and cross-references RcPrx25 (29726.m003967)
DNA ref. Phytozome 12:   29726 (477848..476365)
Protein sequence: RcPrx25 (29726.m003967)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   238 (220)
PWM (Da):   %s   25787.4 (23766.3) Transmb domain:   %s   o5-27i
PI (pH):   %s   8.32 (8.21) Peptide Signal:   %s   cut: 19 range:19-238
Sequence 398
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MKSSLVLLLLFCVALVYQVGVCCGGGLRKNFYKDTCPQAEGIVRSIIWKRVSANSTLPAKLLRMHFHDCFVRGCDASVLLDSTPKNSAEKAAIPNLSLGGFDVIDEVKSKLETTCPGVVSCADIVALAARDSVSFQFKKPIWEVLTGRRDGLISRASEALADIPSPFFNFSLLKQSFANKSLTVHDLVVLSGYDIIDELLDSGKFFTEFAQSMKRMGAIDVLTGSAGEIRKKCNVVN

Retrieve as FASTA  
Remarks Partial sequence from genomic. Incorrect prediction from phytozome (A long sequence in frame is missing due to 'NNNN' and bad sequencing).
DNA ►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGAAGAGTAGCTTAGTTCTGCTGTTGTTGTTCTGTGTTGCATTAGTGTATCAAGTAGGAGTTTGCTGTGGAGGGGGATTAAGAAAAAACTTTTACAAGGATACTTGTCCTCAAGCTGAG
GGTATTGTAAGGAGTATCATTTGGAAACGTGTCTCTGCCAATTCGACATTGCCTGCAAAGCTTTTAAGGATGCATTTTCACGACTGTTTTGTCAGGGTAAACATATATATATATATACAT
ATATTATTGCTATAGAAAATTAACTGGTGTTAGAACTTATTTGGTTAAAAGTGAAATACTAACATATGCCTCACAGAAAATAATTATTTTATATAATAAATTATTACGCCTGTATATGTT
ATTCCTTGTGTACGTAAGTTATACTCACACACAGAAGCAGATTATAAGAAAAGAGTATATGTGCACATTCAATCTCCCCATATTGGGTTAAATATATTATCTTGAATAACAACAATAGAT
ATGAATATTTTTTGTTATGGCTATGCTTTGGCAGGGCTGTGATGCATCCGTATTGCTGGATTCCACACCCAAGAACTCAGCTGAAAAGGCAGCAATTCCAAACCTGTCTCTAGGAGGTTT
CGATGTCATAGATGAGGTGAAGAGCAAGCTAGAGACGACATGCCCTGGAGTTGTCTCTTGTGCAGATATTGTTGCTCTAGCTGCTAGAGATTCTGTTTCCTTCCAAGTAAGTTAATTCTA
TATTTTTTAAACTAACTAGTAAACTGTGTATGTCAGAGATACTAAATTATTTATTATACATGTGGTTCAAACTACTAATTCTTAGTCCAGTGGCCAAAGACGAGCTAGTTCTAATCGAGT
CCCACCCTTCTTTCCCCAATATACTTCTAAGCAAAATTCTTTATCTAATTTGCATGATTTGGTTTTGGTTGTTTGGTGATTGCAGTTTAAAAAGCCAATTTGGGAAGTGCTAACTGGTAG
AAGAGATGGATTAATTTCCAGAGCATCGGAGGCTCTAGCGGATATCCCTTCACCTTTCTTTAATTTTTCCCTTCTCAAACAGTCTTTTGCCAACAAAAGCTTAACGGTCCATGACCTTGT
CGTTTTATCAGGTTAGTAATAAGTATAATATACTCAATCTATCACGATATTTATAGAAAAATTGAATTAAATATTAATGAGTAATTCAAAGTTAATTAATTACGGACACAGCTACTACAT
ACCAATTAGACTACTAATTGATGTTTAAGTCATAATTTTTATTAATAATTTTTGGTCAGGTGGACACACCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNGCTCAGCGATATCATTGACGAGTTGCTTGATTCAGGCAAGTTCTTCACCGAGTTTGCACAATCCATGAAGAGGATGGGAGCAATTGACGTGCTCACTG
GGAGTGCTGGAGAAATTAGGAAGAAATGTAATGTGGTGAATTCT

Retrieve as FASTA  
CDS►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGAAGAGTAGCTTAGTTCTGCTGTTGTTGTTCTGTGTTGCATTAGTGTATCAAGTAGGAGTTTGCTGTGGAGGGGGATTAAGAAAAAACTTTTACAAGGATACTTGTCCTCAAGCTGAG
GGTATTGTAAGGAGTATCATTTGGAAACGTGTCTCTGCCAATTCGACATTGCCTGCAAAGCTTTTAAGGATGCATTTTCACGACTGTTTTGTCAGGGGCTGTGATGCATCCGTATTGCTG
GATTCCACACCCAAGAACTCAGCTGAAAAGGCAGCAATTCCAAACCTGTCTCTAGGAGGTTTCGATGTCATAGATGAGGTGAAGAGCAAGCTAGAGACGACATGCCCTGGAGTTGTCTCT
TGTGCAGATATTGTTGCTCTAGCTGCTAGAGATTCTGTTTCCTTCCAATTTAAAAAGCCAATTTGGGAAGTGCTAACTGGTAGAAGAGATGGATTAATTTCCAGAGCATCGGAGGCTCTA
GCGGATATCCCTTCACCTTTCTTTAATTTTTCCCTTCTCAAACAGTCTTTTGCCAACAAAAGCTTAACGGTCCATGACCTTGTCGTTTTATCAGGTTACGATATCATTGACGAGTTGCTT
GATTCAGGCAAGTTCTTCACCGAGTTTGCACAATCCATGAAGAGGATGGGAGCAATTGACGTGCTCACTGGGAGTGCTGGAGAAATTAGGAAGAAATGTAATGTGGTGAATTCT

Retrieve as FASTA