View Redoxidase 9358

Entry information : RcPrx30 (29772.m000315)

Entry ID	9358
Creation	2011-06-30 (Qiang Li)
Last sequence changes	2014-05-22 (Christophe Dunand)
Sequence status	complete
Reviewer	Not yet reviewed
Last annotation changes	2014-05-22 (Christophe Dunand)

Peroxidase information: RcPrx30 (29772.m000315)

Name (synonym)

RcPrx30 (29772.m000315)

Class

Class III peroxidase [Orthogroup: Prx020]

Taxonomy

Eukaryota Viridiplantae Streptophyta Euphorbiaceae Ricinus

Organism

Ricinus communis [TaxId: 3988 ]

Cellular localisation

N/D

Tissue type

N/D

Inducer

N/D

Repressor

N/D

Best BLASTp hits

Perox	score	E-value	RcPrx30 start..stop	S start..stop
MePrx22	572	0	1..329	1..328
PtPrx59	571	0	1..329	1..330
MePrx63	568	0	1..329	1..327
PtPrx35	566	0	1..329	1..330

Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '9358' 'complement(join(72087..72672,73198..73389,73571..73774))'

Exons►

Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size
N° 1	73571..73774	202	N° 2	73198..73389	190	N° 3	72087..72672	584
complement(join(72087..72672,73198..73389,73571..73774))

Literature and cross-references RcPrx30 (29772.m000315)

DNA ref.	Phytozome 12: 29772 (73774..70411)
EST ref.	GenBank: EG670940.1 [3' end]

Protein sequence: RcPrx30 (29772.m000315)

Sequence Properties
first value : protein
second value (mature protein)

Length (aa):	329 (311)
PWM (Da):	36254.09 (34389.1)
PI (pH):	4.97 (4.97)	Peptide Signal:	cut: 19 range:19-329

Sequence
Send to BLAST
Send to Peroxiscan

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

MSSLLTAFLLLITAMTSAAPLPLRAGFYSETCPEAEIIVRNFMMKALIKEPRSVASVMRFQFHDCFVNGCDASMLMDDTPSMLGEKLSLSNINSLRSYEVVDEVKEELEKVCPGTVSCAD
IIVMASRDAVALSGGPDWEVKLGREDSLTASQEDANNIMPSPRSNASFLIDLFAKFNLSVKDLVALSGSHSIGQGRCFSIVFRLYNQSGTGKPDPTIEPRFREKLEKLCPIGGDENVTGN
LDSTPVVFDNMYFKDLVAGRGFLNSDQTLYTYPETRKYVSFFSKDQSAFFKAFVEGMIKMGDLQSGRPGEIRTNCRVANRRPVDILLES

Retrieve as FASTA

Remarks

Complete sequence from genomic (introns 1 and 2) and ESTs. Incorrect prediction from Phytozome (3' end is missing due to 'NNNN' in DNA but predicted as complete). Completed with EST

Promoter►
Send to BLAST
Send to cis Analysis

.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2

ATTATTTATA GGTCTCATAA TTGTTTGTGC CTAACCAATT TTACCAAAGG TGGTTATGCA GTTGTGTATT TTCAAAATCT TTTTGCTAAA AATTGAATTT TGAATCATAA AACAGCACCA TAATTATTCA TTTTACATAG CCTAAATTTC TTTTCTTTCA TTAAAAAAGA AAATAAAAAT TAAAGAGAGT TTTCTCCTTC TTTTGCTTTC TTTCAATCTT TTCATTCCAT ACAGTTTGTA CTCTTTTTTC AATGTAGAAA TCATTATAAT TTTTCATCCA ATTTTAATAG ATCATTTTCA ATTTACACAA GAATTTAAGA AATTTAAAAT TTTTCAATTA ATATTACCTT TTTTAACTAT TTTCTTACTA AAATACGTCT AGGAGTCATC CGGATTGAGA AATTTTATAA AATCTATGAA TTTAGCTTAA ATTCATTGTT TGACAAGTAA ACAAATAATC TAATCCATAA ATTTTGAAAA ATATTTCATC CTCCAAATTT TTTTATTTTT AAAGGTTTTA ATTTTCTACC TAGAAAGTGA AAAGGTTCAA AATCCATCAT TTTAAAAGAA TGATGGATTA TTATAATATA TTTTTATTCT AATAATATTT CTAATAAAAT TATTTTATCT TAAAATTTTC TTTAACTTTA CACAAAAATT TATTATTTTT ATATTTAATT CAAATAATAA AATTTTAAAA TTTATAAATT TTAAATCTAT AAATTTTAAT TAAATCTATG AATTTCAAAA TCTCTCAATC CCAACAACAC CTTAAATCTT TTAATACATT CGCAAACTTT TTAAATATAT TGGGCAATGT TTGTCAACTC ATTTATAATT TTTAAAATTC AATAAAAGCA CATTTATATT GCAATACAAA AAAGTTTATA TAGTAATATA CAATTTCAAA ATTAAAAAAG TGAAAAATGA ATTATATGTG ATGATATTTA AGTTAATTAA TGAAGAATAT TTTAAATATT nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnACCCAC ATCCTTTTTT CTATGCCCAT CAAATAGACA TAGAAAAAGT TAAAAAAACT AATGAACAGA AAACAAATAA TCATCCTGAA ACTTTTTGTG TTGTTTAGAA TCAGGTCCTT TATTTTGATT GTATTTAAAT GATTCCTACT TTCTTCTTTT TAAGTATTGC GAACCTTTTA ACACCTCAAA TCCCCTAAAC GATGTCAAAA ACATTATTGT TTGGCCAAAT TCATATTATC TTTTATGAGC TCTTTCTATT TTTCCTTCAT TCTGTAATTT TTTTATGTGT TATTGAATTT TTAAATAGTT TTTTTTTTTT AAATTTTTCT TAACAAATCA ACACTGTTTT GTGTATTAAT CACTTTTCGC ACCATTTGAA ATTTATGTGC GTTTGAGATG TTAAAAAGTC CATAACACTG AGAAAATAAA AACCATGGAT CATTTAAAAC ATAATTAAAT GCTAAGAACC CAGTGCCCAA AAACAGGGAT AATTCAAGGA CTATAAAAAT AGGGTTTTTT TTTTTCCTTT CCAAATTTAA TCACCCCCAT GACATGCCAT CCATGGATGA TAAAGCTCTC TATTCATTAC ATTATATGCA TACATACATG
AACCCAACAA GTTATATAAA GCCTATAGAA AGCACCAAAA ACAGACCACA TCTCTCAATA CTATCAACTG CTGCCCAAAA

Retrieve as FASTA

DNA ►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

TCTCCTAACAGCCTTTCTCCTGCTCATAACAGCCATGACCTCTGCAGCGCCACTGCCACTCCGGGCAGGATTCTATTCGGAGACGTGCCCGGAAGCTGAAATTATAGTGAGGAACTTTAT
GATGAAGGCTTTGATTAAAGAACCAAGAAGTGTTGCCTCGGTTATGCGCTTTCAGTTCCATGATTGTTTCGTTAATGTAAAAAGAAACAAACTTATAGTGCAAAAGCAAAACGCTCTTTA
TATATATATATATAGAGATATAAAGTTTATTTTCTCTCTTTTTCATAAAGATCATTATTCTTGATTCTTTCTTGATTTGATTATCAAATTTTTTTTGAATCTTTTTTGTTTTTTGTTTTT
CTGAATCTGTTATAAAGGGTTGTGATGTGCTTCTATGTTGATGGATGATACACCAAGTATGCTAGGAGAGAAGCTTTCTCTTTCCAATATAAATTCTTTGAGGTCTTATGAAGTTGTTGA
TGAAGTCAAGGAAGAGTTAGAGAAGGTCTGTCCAGGAACTGTTTCTTGTGCTGACATAATTGTCATGGCCTCGAGAGATGCTGTTGCTCTGGTAATTCTTTTTGTTTGTTTAACTTAGAT
CTTTAGTTAATTTATTTATTTATTTTTATTGTTGGTTCTCTTCAATCTTCCTAAGAGAAAAGAATTCATCAATTATGTCAACTTGGCCATATTCTCAAAGAAAAAAGAAAGAAAAAGAAA
GAAAAAAGGCCATAACCGAAAAAATTATTATTATTGGGTCTGAGCTATTGAAGCATTCTCACCGATATTCTGCGATATGGGTCCTCGGTTGTGCAACTTTTGTCAAGTAGTCAGTTATCA
CAGCATTTAAAGATAAGACCCGAATAAATAATGAATGATCTTTACAAAAAGTAGTGCATAGCTTACCTAAGTTAACTTGTCAATCAGGGCACTGCCACTGCCACTATTTAGTTACCCTTT
TCATCTAGCTTAGAAATGAAAGATTCGTAAAAAGGCAATAATTGTTGTCATGAGGAAGCATACATTTTAATAGTGGATGGTTTTGATCATTATCTGAAATGGGTTTTCTTTGTTTTATCA
AATTGTGTTAATCTAGAGCGGAGGGCGCCAGATTGGGAAGTGAAGTTAGGGAGAGAAGATAGTTTAACAGCAAGCCAAGAAGACGCGAACAATATCATGCCGAGTCCAAGATCAAATGCA
AGCTTCCTAATAGACCTATTTGCCAAATTCAATCTTTCCGTGAAGGATCTTGTAGCCCTTTCAGGGTCACATTCTATTGGCCAAGGAAGGTGTTTCTCTATAGTCTTTAGGCTATATAAC
CAGTCTGGAACCGGCAAGCCTGACCCAACAATCGAGCCAAGATTTAGAGAAAAGCTAGAAAAGTTGTGTCCGATTGGCGGAGATGAAAATGTAACAGGGAATCTTGATTCAACGCCAGTA
GTTTTTGACAACATGTACTTTAAAGATTTGGTTGCAGGCAGAGGGTTTCTTAATTCTGATCAAACGCTTTATACATATCCTGAAACAAGAAAATACGTTAGCTTTTTTAGCAAAGACCAA
TCTGCATTCTTCAAGGCCTTTGTTGAAGGAATGATAAAGATGGGTGATTTGCAGTCTGGAAGGCCTGGAGAGATCAGAACCAATTGCAGAGTTGCCAACAGGCGGCCTGTTGATATATTG
TTGGAGTCCTGA

Retrieve as FASTA

CDS►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

Retrieve as FASTA