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Entry information : RcPrx30 (29772.m000315)
Entry ID 9358
Creation 2011-06-30 (Qiang Li)
Last sequence changes 2014-05-22 (Christophe Dunand)
Sequence status complete
Reviewer Not yet reviewed
Last annotation changes 2014-05-22 (Christophe Dunand)
Peroxidase information: RcPrx30 (29772.m000315)
Name (synonym) RcPrx30 (29772.m000315)
Class Class III peroxidase    [Orthogroup: Prx020]
Taxonomy Eukaryota Viridiplantae Streptophyta Euphorbiaceae Ricinus
Organism Ricinus communis    [TaxId: 3988 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value RcPrx30
start..stop		 S start..stop
MePrx22 572 0 1..329 1..328
PtPrx59 571 0 1..329 1..330
MePrx63 568 0 1..329 1..327
PtPrx35 566 0 1..329 1..330
Gene structure Fichier Exons►
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 73571..73774 202 N° 2 73198..73389 190 N° 3 72087..72672 584  
complement(join(72087..72672,73198..73389,73571..73774))


exon

Literature and cross-references RcPrx30 (29772.m000315)
DNA ref. Phytozome 12:   29772 (73774..70411)
EST ref. GenBank:   EG670940.1 [3' end]
Protein sequence: RcPrx30 (29772.m000315)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   329 (311)
PWM (Da):   %s   36254.09 (34389.1) Transmb domain:   %s   i13-35o
PI (pH):   %s   4.97 (4.97) Peptide Signal:   %s   cut: 19 range:19-329
Sequence
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MSSLLTAFLLLITAMTSAAPLPLRAGFYSETCPEAEIIVRNFMMKALIKEPRSVASVMRFQFHDCFVNGCDASMLMDDTPSMLGEKLSLSNINSLRSYEVVDEVKEELEKVCPGTVSCAD
IIVMASRDAVALSGGPDWEVKLGREDSLTASQEDANNIMPSPRSNASFLIDLFAKFNLSVKDLVALSGSHSIGQGRCFSIVFRLYNQSGTGKPDPTIEPRFREKLEKLCPIGGDENVTGN
LDSTPVVFDNMYFKDLVAGRGFLNSDQTLYTYPETRKYVSFFSKDQSAFFKAFVEGMIKMGDLQSGRPGEIRTNCRVANRRPVDILLES

Retrieve as FASTA  
Remarks Complete sequence from genomic (introns 1 and 2) and ESTs. Incorrect prediction from Phytozome (3' end is missing due to 'NNNN' in DNA but predicted as complete). Completed with EST
Promoter►
Send to BLAST
Send to cis Analysis
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
ATTATTTATA GGTCTCATAA TTGTTTGTGC CTAACCAATT TTACCAAAGG TGGTTATGCA GTTGTGTATT TTCAAAATCT TTTTGCTAAA AATTGAATTT TGAATCATAA AACAGCACCA  TAATTATTCA TTTTACATAG CCTAAATTTC TTTTCTTTCA TTAAAAAAGA AAATAAAAAT TAAAGAGAGT TTTCTCCTTC TTTTGCTTTC TTTCAATCTT TTCATTCCAT ACAGTTTGTA  CTCTTTTTTC AATGTAGAAA TCATTATAAT TTTTCATCCA ATTTTAATAG ATCATTTTCA ATTTACACAA GAATTTAAGA AATTTAAAAT TTTTCAATTA ATATTACCTT TTTTAACTAT  TTTCTTACTA AAATACGTCT AGGAGTCATC CGGATTGAGA AATTTTATAA AATCTATGAA TTTAGCTTAA ATTCATTGTT TGACAAGTAA ACAAATAATC TAATCCATAA ATTTTGAAAA  ATATTTCATC CTCCAAATTT TTTTATTTTT AAAGGTTTTA ATTTTCTACC TAGAAAGTGA AAAGGTTCAA AATCCATCAT TTTAAAAGAA TGATGGATTA TTATAATATA TTTTTATTCT  AATAATATTT CTAATAAAAT TATTTTATCT TAAAATTTTC TTTAACTTTA CACAAAAATT TATTATTTTT ATATTTAATT CAAATAATAA AATTTTAAAA TTTATAAATT TTAAATCTAT  AAATTTTAAT TAAATCTATG AATTTCAAAA TCTCTCAATC CCAACAACAC CTTAAATCTT TTAATACATT CGCAAACTTT TTAAATATAT TGGGCAATGT TTGTCAACTC ATTTATAATT  TTTAAAATTC AATAAAAGCA CATTTATATT GCAATACAAA AAAGTTTATA TAGTAATATA CAATTTCAAA ATTAAAAAAG TGAAAAATGA ATTATATGTG ATGATATTTA AGTTAATTAA  TGAAGAATAT TTTAAATATT nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn  nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn  nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnACCCAC  ATCCTTTTTT CTATGCCCAT CAAATAGACA TAGAAAAAGT TAAAAAAACT AATGAACAGA AAACAAATAA TCATCCTGAA ACTTTTTGTG TTGTTTAGAA TCAGGTCCTT TATTTTGATT  GTATTTAAAT GATTCCTACT TTCTTCTTTT TAAGTATTGC GAACCTTTTA ACACCTCAAA TCCCCTAAAC GATGTCAAAA ACATTATTGT TTGGCCAAAT TCATATTATC TTTTATGAGC  TCTTTCTATT TTTCCTTCAT TCTGTAATTT TTTTATGTGT TATTGAATTT TTAAATAGTT TTTTTTTTTT AAATTTTTCT TAACAAATCA ACACTGTTTT GTGTATTAAT CACTTTTCGC  ACCATTTGAA ATTTATGTGC GTTTGAGATG TTAAAAAGTC CATAACACTG AGAAAATAAA AACCATGGAT CATTTAAAAC ATAATTAAAT GCTAAGAACC CAGTGCCCAA AAACAGGGAT  AATTCAAGGA CTATAAAAAT AGGGTTTTTT TTTTTCCTTT CCAAATTTAA TCACCCCCAT GACATGCCAT CCATGGATGA TAAAGCTCTC TATTCATTAC ATTATATGCA TACATACATG 
AACCCAACAA GTTATATAAA GCCTATAGAA AGCACCAAAA ACAGACCACA TCTCTCAATA CTATCAACTG CTGCCCAAAA 

Retrieve as FASTA  
DNA ►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
TCTCCTAACAGCCTTTCTCCTGCTCATAACAGCCATGACCTCTGCAGCGCCACTGCCACTCCGGGCAGGATTCTATTCGGAGACGTGCCCGGAAGCTGAAATTATAGTGAGGAACTTTAT
GATGAAGGCTTTGATTAAAGAACCAAGAAGTGTTGCCTCGGTTATGCGCTTTCAGTTCCATGATTGTTTCGTTAATGTAAAAAGAAACAAACTTATAGTGCAAAAGCAAAACGCTCTTTA
TATATATATATATAGAGATATAAAGTTTATTTTCTCTCTTTTTCATAAAGATCATTATTCTTGATTCTTTCTTGATTTGATTATCAAATTTTTTTTGAATCTTTTTTGTTTTTTGTTTTT
CTGAATCTGTTATAAAGGGTTGTGATGTGCTTCTATGTTGATGGATGATACACCAAGTATGCTAGGAGAGAAGCTTTCTCTTTCCAATATAAATTCTTTGAGGTCTTATGAAGTTGTTGA
TGAAGTCAAGGAAGAGTTAGAGAAGGTCTGTCCAGGAACTGTTTCTTGTGCTGACATAATTGTCATGGCCTCGAGAGATGCTGTTGCTCTGGTAATTCTTTTTGTTTGTTTAACTTAGAT
CTTTAGTTAATTTATTTATTTATTTTTATTGTTGGTTCTCTTCAATCTTCCTAAGAGAAAAGAATTCATCAATTATGTCAACTTGGCCATATTCTCAAAGAAAAAAGAAAGAAAAAGAAA
GAAAAAAGGCCATAACCGAAAAAATTATTATTATTGGGTCTGAGCTATTGAAGCATTCTCACCGATATTCTGCGATATGGGTCCTCGGTTGTGCAACTTTTGTCAAGTAGTCAGTTATCA
CAGCATTTAAAGATAAGACCCGAATAAATAATGAATGATCTTTACAAAAAGTAGTGCATAGCTTACCTAAGTTAACTTGTCAATCAGGGCACTGCCACTGCCACTATTTAGTTACCCTTT
TCATCTAGCTTAGAAATGAAAGATTCGTAAAAAGGCAATAATTGTTGTCATGAGGAAGCATACATTTTAATAGTGGATGGTTTTGATCATTATCTGAAATGGGTTTTCTTTGTTTTATCA
AATTGTGTTAATCTAGAGCGGAGGGCGCCAGATTGGGAAGTGAAGTTAGGGAGAGAAGATAGTTTAACAGCAAGCCAAGAAGACGCGAACAATATCATGCCGAGTCCAAGATCAAATGCA
AGCTTCCTAATAGACCTATTTGCCAAATTCAATCTTTCCGTGAAGGATCTTGTAGCCCTTTCAGGGTCACATTCTATTGGCCAAGGAAGGTGTTTCTCTATAGTCTTTAGGCTATATAAC
CAGTCTGGAACCGGCAAGCCTGACCCAACAATCGAGCCAAGATTTAGAGAAAAGCTAGAAAAGTTGTGTCCGATTGGCGGAGATGAAAATGTAACAGGGAATCTTGATTCAACGCCAGTA
GTTTTTGACAACATGTACTTTAAAGATTTGGTTGCAGGCAGAGGGTTTCTTAATTCTGATCAAACGCTTTATACATATCCTGAAACAAGAAAATACGTTAGCTTTTTTAGCAAAGACCAA
TCTGCATTCTTCAAGGCCTTTGTTGAAGGAATGATAAAGATGGGTGATTTGCAGTCTGGAAGGCCTGGAGAGATCAGAACCAATTGCAGAGTTGCCAACAGGCGGCCTGTTGATATATTG
TTGGAGTCCTGA

Retrieve as FASTA  
CDS►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
TCTCCTAACAGCCTTTCTCCTGCTCATAACAGCCATGACCTCTGCAGCGCCACTGCCACTCCGGGCAGGATTCTATTCGGAGACGTGCCCGGAAGCTGAAATTATAGTGAGGAACTTTAT
GATGAAGGCTTTGATTAAAGAACCAAGAAGTGTTGCCTCGGTTATGCGCTTTCAGTTCCATGATTGTTTCGTTAATGTAAAAAGTGCTTCTATGTTGATGGATGATACACCAAGTATGCT
AGGAGAGAAGCTTTCTCTTTCCAATATAAATTCTTTGAGGTCTTATGAAGTTGTTGATGAAGTCAAGGAAGAGTTAGAGAAGGTCTGTCCAGGAACTGTTTCTTGTGCTGACATAATTGT
CATGGCCTCGAGAGATGCTGTTGCTCTGGTAATTCTGCCAGATTGGGAAGTGAAGTTAGGGAGAGAAGATAGTTTAACAGCAAGCCAAGAAGACGCGAACAATATCATGCCGAGTCCAAG
ATCAAATGCAAGCTTCCTAATAGACCTATTTGCCAAATTCAATCTTTCCGTGAAGGATCTTGTAGCCCTTTCAGGGTCACATTCTATTGGCCAAGGAAGGTGTTTCTCTATAGTCTTTAG
GCTATATAACCAGTCTGGAACCGGCAAGCCTGACCCAACAATCGAGCCAAGATTTAGAGAAAAGCTAGAAAAGTTGTGTCCGATTGGCGGAGATGAAAATGTAACAGGGAATCTTGATTC
AACGCCAGTAGTTTTTGACAACATGTACTTTAAAGATTTGGTTGCAGGCAGAGGGTTTCTTAATTCTGATCAAACGCTTTATACATATCCTGAAACAAGAAAATACGTTAGCTTTTTTAG
CAAAGACCAATCTGCATTCTTCAAGGCCTTTGTTGAAGGAATGATAAAGATGGGTGATTTGCAGTCTGGAAGGCCTGGAGAGATCAGAACCAATTGCAGAGTTGCCAACAGGCGGCCTGT
TGATATATTGTTGGAGTCCTGA

Retrieve as FASTA