Entry information : RcPrx[P]63 (30131.m007114)
Entry ID 9408
Creation 2011-06-30 (Qiang Li)
Last sequence changes 2011-10-03 (Qiang Li)
Sequence status theoretical translation / pseudogene
Reviewer Qiang Li
Last annotation changes 2012-01-04 (Qiang LI)
Peroxidase information: RcPrx[P]63 (30131.m007114)
Name (synonym) RcPrx[P]63 (30131.m007114)
Class Class III peroxidase    [Orthogroup: N/D] N/D
Taxonomy Eukaryota Viridiplantae Streptophyta Euphorbiaceae Ricinus
Organism Ricinus communis    [TaxId: 3988 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value RcPrx[P]63
start..stop
S start..stop
RcPrx65 95 1e-24 8..108 90..216
MePrx84 79 9e-19 8..109 122..245
LtPrx04 75 4e-18 8..96 63..177
PtPrx61 74 4e-17 8..110 62..191
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 1627369..1627557 189 N° 2 1627621..1627721 101 N° 3 1627892..1627937 46  
join(1627369..1627557,1627621..1627721,1627892..1627937)


exon

Literature and cross-references RcPrx[P]63 (30131.m007114)
DNA ref. Phytozome 12:   30131 (1627369..1627937)
Protein sequence: RcPrx[P]63 (30131.m007114)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   112
PWM (Da):   %s   12510.31  
PI (pH):   %s   4.37
Sequence 183
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MKLLRDYDAFILLDSVDGRKSEKDFTEDCDIVHLFKSQVEEVCPRIVSCEDFIFLAARKYTLQVGGSFYPLFSDEPPSPPADLSIRGDDERETLSLSFLSFGVAKLGFIKA

Retrieve as FASTA  
Remarks Pseudogene from genomic. Incorrect prediction from phytozome (5' end is missing due to NNNN in DNA, gaps in frame, 3' end is missing).
DNA
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGAAGCTTTTGCGGGATTATGATGCTTTTATTCTGTTAGATTCTGTTGATGGCAGGAAATCTGAGAAAGATTTCACTGAGGATTGTGATATAGTTCACTTATTCAAGTCTCAGGTTGAA
GAAGTTTGCCCTCGAATTGTTTCTTGTGAAGATTTTATTTTCTTGGCAGCCAGAAAATATACTCTTCAG
GTATGTATCTCCATACCCACCTCTCTCTCTTTCTCGGGATCTTATTGCATT
TGTGAATTTCAGGTTGGTGGTTCATTCTATCCACTCTTCTCAGATGAGCCTCCTTCCCCCCCTGCTGATCTTTCAATAAGAGGCGACGATGAAAGAGAAACTTTGTCTCTTAGGTACTAT
TCTTGGCCTTTATCTTTGTGTGTGTGTGTGTGTTTTTTTTTTTAAATTTGGTAAAACTATGTTGATTGAGCCTTGTCATTCACCTTTAAGTATTTTTGCGGTTCGGTCTCTTATTAAACA
TCCTTTAAATTCTTGTTATCAGAGCTTCCTTATCAAGATGAAGCTTTCTGTCCTTCGGGGTGGCAAAGCTCGGATTCATCAAAGCTGGG

Retrieve as FASTA  
CDS
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGAAGCTTTTGCGGGATTATGATGCTTTTATTCTGTTAGATTCTGTTGATGGCAGGAAATCTGAGAAAGATTTCACTGAGGATTGTGATATAGTTCACTTATTCAAGTCTCAGGTTGAA
GAAGTTTGCCCTCGAATTGTTTCTTGTGAAGATTTTATTTTCTTGGCAGCCAGAAAATATACTCTTCAG
GTTGGTGGTTCATTCTATCCACTCTTCTCAGATGAGCCTCCTTCCCCCCCT
GCTGATCTTTCAATAAGAGGCGACGATGAAAGAGAAACTTTGTCTCTTAG
CTTTCTGTCCTTCGGGGTGGCAAAGCTCGGATTCATCAAAGCTGGG

Retrieve as FASTA