Entry information : SiPrx105 (Si024981m)
Entry ID 9449
Creation 2011-07-03 (Qiang Li)
Last sequence changes 2011-10-03 (Qiang Li)
Sequence status partial
Reviewer Qiang Li
Last annotation changes 2011-12-15 (Qiang Li)
Peroxidase information: SiPrx105 (Si024981m)
Name (synonym) SiPrx105 (Si024981m)
Class Class III peroxidase    [Orthogroup: N/D] N/D
Taxonomy Eukaryota Viridiplantae Streptophyta Monocotyledons Poaceae Setaria
Organism Setaria italica    [TaxId: 4555 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value SiPrx105
start..stop
S start..stop
ZmPrx33 161 2e-50 1..117 216..338
SbPrx117 154 9e-48 1..117 217..338
EferPrx57 94 1e-24 1..116 197..321
OsPrx73 91 1e-23 3..117 186..308
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 5242637..5242990 354  
complement(join(5242637..5242990))


exon

Literature and cross-references SiPrx105 (Si024981m)
DNA ref. Phytozome 12:   scaffold_3 (5242990..5242637)
Protein sequence: SiPrx105 (Si024981m)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   117
PWM (Da):   %s   13030.57  
PI (pH):   %s   7.98
Sequence
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Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

GHCVNVDTSQ ECRDKGYEAT LHLLCPKKIV SPLVMKVLVV PSDLMPTLFY THYFRGATVG RGLFTVDTYT AGHVRWFAHD REGFFGAFAS TFVKLAGFGV LTGEEGEIRK RCDVVNH* 

Retrieve as FASTA  
Remarks Complete sequence from genomic. Incorrect prediction from phytozome (5' end is missing).
DNA
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
GGCCACTGCG TCAATGTGGA CACCAGCCAG GAGTGCCGCG ACAAGGGCTA TGAAGCCACG TTGCACCTGC TATGCCCGAA GAAGATCGTG TCGCCGCTGG TCATGAAGGT TCTGGTCGTC  CCCAGCGACC TGATGCCGAC ATTGTTCTAC ACGCACTACT TCCGAGGCGC GACGGTGGGC CGCGGGCTCT TCACCGTCGA CACCTACACG GCGGGGCACG TGCGGTGGTT CGCGCACGAC 
AGGGAGGGCT TCTTCGGGGC CTTCGCCTCG ACGTTCGTGA AGCTCGCCGG GTTCGGCGTG CTCACCGGCG AGGAGGGGGA GATCAGGAAG CGGTGCGACG TCGTCAACCA CTGA 

Retrieve as FASTA  
CDS
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
GGCCACTGCG TCAATGTGGA CACCAGCCAG GAGTGCCGCG ACAAGGGCTA TGAAGCCACG TTGCACCTGC TATGCCCGAA GAAGATCGTG TCGCCGCTGG TCATGAAGGT TCTGGTCGTC  CCCAGCGACC TGATGCCGAC ATTGTTCTAC ACGCACTACT TCCGAGGCGC GACGGTGGGC CGCGGGCTCT TCACCGTCGA CACCTACACG GCGGGGCACG TGCGGTGGTT CGCGCACGAC 
AGGGAGGGCT TCTTCGGGGC CTTCGCCTCG ACGTTCGTGA AGCTCGCCGG GTTCGGCGTG CTCACCGGCG AGGAGGGGGA GATCAGGAAG CGGTGCGACG TCGTCAACCA CTGA 

Retrieve as FASTA