Entry information : SiPrx60 (Si012490m)
Entry ID 9555
Creation 2011-07-03 (Qiang Li)
Last sequence changes 2011-12-12 (Qiang Li)
Sequence status partial
Reviewer Not yet reviewed
Last annotation changes 2011-12-15 (Qiang Li)
Peroxidase information: SiPrx60 (Si012490m)
Name (synonym) SiPrx60 (Si012490m)
Class Class III peroxidase     [Orthogroup: Prx023]*
Taxonomy Eukaryota Viridiplantae Streptophyta Monocotyledons Poaceae Setaria
Organism Setaria italica    [TaxId: 4555 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value SiPrx60
start..stop
S start..stop
SiPrx159 269 3e-92 1..137 191..327
SbPrx06 222 4e-74 1..136 191..326
ZmPrx11 218 4e-72 1..136 193..328
ZmPrx86 200 3e-65 1..136 192..331
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 11347964..11348374 411  
join(11347964..11348374)


exon

Literature and cross-references SiPrx60 (Si012490m)
DNA ref. Phytozome 12:   scaffold_7 (11347964..11348374)
Protein sequence: SiPrx60 (Si012490m)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   137
PWM (Da):   %s   14811.09  
PI (pH):   %s   5.03
Sequence
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Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
AHTIGRSRCV LFSNRLSNFS ATNSVDPMLD ASLADSLQSL CAGGDGNQTT ALYVSSADVF DNYYYQNLLA NKGLLSSDQG LFSSPEGTAN TKDLVRTYSH DEVQFFCNFG WSMIKMGNIP 
LTGSEGEIRK NCRVVNS 

Retrieve as FASTA  
Remarks Partial sequence from genomic. Incorrect prediction from phytozome (Large 5' end is missing).
DNA
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.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
GCCCACACGA TCGGCCGATC CCGGTGCGTG CTGTTCAGCA ATCGCCTGTC AAACTTCTCG GCGACGAATT CAGTCGATCC GATGCTGGAT GCCAGCCTCG CCGACAGCCT TCAGAGCCTC  TGTGCAGGCG GCGACGGCAA CCAGACCACC GCTCTCTACG TCAGCTCCGC CGACGTGTTC GACAACTACT ACTACCAGAA CCTCCTAGCC AATAAGGGCC TGTTGTCCTC CGACCAGGGC  CTCTTTTCAA GCCCGGAAGG CACTGCCAAC ACAAAGGATC TCGTGCGGAC CTACAGCCAC GACGAGGTTC AATTCTTCTG CAATTTCGGC TGGTCCATGA TCAAGATGGG GAACATCCCT 
CTCACGGGCT CGGAAGGGGA AATCCGCAAG AACTGCAGGG TTGTCAACTC A 

Retrieve as FASTA  
CDS
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.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
GCCCACACGA TCGGCCGATC CCGGTGCGTG CTGTTCAGCA ATCGCCTGTC AAACTTCTCG GCGACGAATT CAGTCGATCC GATGCTGGAT GCCAGCCTCG CCGACAGCCT TCAGAGCCTC  TGTGCAGGCG GCGACGGCAA CCAGACCACC GCTCTCTACG TCAGCTCCGC CGACGTGTTC GACAACTACT ACTACCAGAA CCTCCTAGCC AATAAGGGCC TGTTGTCCTC CGACCAGGGC  CTCTTTTCAA GCCCGGAAGG CACTGCCAAC ACAAAGGATC TCGTGCGGAC CTACAGCCAC GACGAGGTTC AATTCTTCTG CAATTTCGGC TGGTCCATGA TCAAGATGGG GAACATCCCT 
CTCACGGGCT CGGAAGGGGA AATCCGCAAG AACTGCAGGG TTGTCAACTC A 

Retrieve as FASTA