Entry information : SiPrx[P]86 ( Si020707m)
Entry ID 9577
Creation 2011-07-03 (Qiang Li)
Last sequence changes 2011-12-07 (Qiang Li)
Sequence status theoretical translation / pseudogene
Reviewer Christophe Dunand
Last annotation changes 2016-01-15 (Christophe Dunand)
Peroxidase information: SiPrx[P]86 ( Si020707m)
Name (synonym) SiPrx[P]86 ( Si020707m)
Class Class III peroxidase    [Orthogroup: N/D] N/D
Taxonomy Eukaryota Viridiplantae Streptophyta Monocotyledons Poaceae Setaria
Organism Setaria italica    [TaxId: 4555 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value SiPrx[P]86
start..stop
S start..stop
SiPrx84 196 3e-64 8..114 225..332
OsPrx96 149 1e-45 8..114 221..328
ZmPrx89 136 7e-41 8..114 226..337
BdiPrx36 128 1e-37 8..114 226..333
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 81871..82212 342  
complement(join(81871..82212))


exon

Literature and cross-references SiPrx[P]86 ( Si020707m)
DNA ref. Phytozome 12:   scaffold_11 (82212..81871)
Protein sequence: SiPrx[P]86 ( Si020707m)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   114
PWM (Da):   %s   12240.97  
PI (pH):   %s   4.88
Sequence
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Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

MYWLTHGVDA DYAKNLTAKC KPGNVATVQP LDPTTPSTFD LGYYNNVYNH RALLASDALL NDSLSGAYVQ LMTNASSVDV FFADFAVSMI NMGRIGVRTG TDGEIRATCA IYVD 

Retrieve as FASTA  
Remarks Pseudogene sequence from genomic (only exon 4). Incorrect prediction from phytozome (Large 5' end is missing).
DNA
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.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGTATTGGC TTACACATGG TGTCGACGCC GACTACGCCA AGAACCTCAC GGCGAAGTGC AAGCCGGGCA ACGTCGCCAC CGTGCAGCCG CTCGACCCCA CGACGCCCAG CACCTTCGAC  CTGGGGTACT ACAACAACGT CTACAACCAC CGGGCGCTGC TCGCCTCCGA CGCGCTGCTC AACGACAGCC TCTCCGGCGC CTACGTCCAA CTCATGACCA ACGCCTCCTC CGTCGACGTC 
TTCTTCGCCG ACTTCGCCGT CTCCATGATC AACATGGGAA GGATCGGAGT GCGCACCGGC ACCGACGGCG AGATCAGGGC CACATGCGCA ATCTACGTCG AC 

Retrieve as FASTA  
CDS
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.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGTATTGGC TTACACATGG TGTCGACGCC GACTACGCCA AGAACCTCAC GGCGAAGTGC AAGCCGGGCA ACGTCGCCAC CGTGCAGCCG CTCGACCCCA CGACGCCCAG CACCTTCGAC  CTGGGGTACT ACAACAACGT CTACAACCAC CGGGCGCTGC TCGCCTCCGA CGCGCTGCTC AACGACAGCC TCTCCGGCGC CTACGTCCAA CTCATGACCA ACGCCTCCTC CGTCGACGTC 
TTCTTCGCCG ACTTCGCCGT CTCCATGATC AACATGGGAA GGATCGGAGT GCGCACCGGC ACCGACGGCG AGATCAGGGC CACATGCGCA ATCTACGTCG AC 

Retrieve as FASTA