Entry information : SiPrx[P]113 (Si027677m)
Entry ID 9592
Creation 2011-07-03 (Qiang Li)
Last sequence changes 2011-12-14 (Qiang Li)
Sequence status theoretical translation / pseudogene
Reviewer Not yet reviewed
Last annotation changes 2011-12-07 (Qiang Li)
Peroxidase information: SiPrx[P]113 (Si027677m)
Name (synonym) SiPrx[P]113 (Si027677m)
Class Class III peroxidase    [Orthogroup: N/D] N/D
Taxonomy Eukaryota Viridiplantae Streptophyta Monocotyledons Poaceae Setaria
Organism Setaria italica    [TaxId: 4555 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value SiPrx[P]113
start..stop
S start..stop
ZmPrx81 212 2e-68 1..217 104..323
OsPrx63 197 8e-63 1..216 103..319
OsPrx62 196 3e-62 1..217 110..327
OsPrx64 190 7e-60 1..217 103..320
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 33761898..33762547 650  
join(33761898..33762547)


exon

Literature and cross-references SiPrx[P]113 (Si027677m)
DNA ref. Phytozome 12:   scaffold_8 (33761898..33762547)
Protein sequence: SiPrx[P]113 (Si027677m)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   216
PWM (Da):   %s   23819.1  
PI (pH):   %s   9.44
Sequence
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Send to Peroxiscan
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RAMQLIEDTR ITVHAQCGPT VSCADILALA TRRAVVRAGG *TFPVRLGRY DNVAPATHRD VAAIPLPNTS DADKLLAAFA SRGLTDLVAL SGAHSIGKAH CPSFRDRAAL YDDDFTRKLF 
RDCTAGGTRT WWRxLDGVTP RALDSQYYRN LLYRGEGVLT SDVALLSHPL TAMSVRYYND HPQEFLNHFS SKMDKLYNVP RPGFGEIRRF SCFRTNN 

Retrieve as FASTA  
Remarks Pseudogene from genomic. Incorrect prediction from phytozome (Gaps and stop in frame; 5' end is missing).
DNA
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.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
CGGGCGATGC AGCTGATCGA GGACACCCGC ATCACCGTGC ACGCACAGTG CGGGCCCACC GTGTCCTGCG CCGACATCCT GGCCCTCGCC ACCCGCCGCG CCGTCGTCCG CGCAGGCGGC  TGAACCTTCC CCGTCCGCCT CGGCCGCTAT GACAACGTCG CGCCGGCGAC CCACCGCGAC GTCGCCGCCA TCCCGCTGCC GAACACCAGC GACGCCGACA AGCTCCTCGC CGCCTTCGCC  AGCCGGGGCC TCACCGACCT CGTCGCGCTC TCCGGCGCGC ACTCCATCGG CAAGGCACAC TGCCCGTCGT TCCGCGACCG GGCGGCGCTG TACGACGACG ACTTCACCAG GAAGCTCTTC  AGGGACTGCA CTGCAGGAGG GACGCGTACA TGGTGGAGGA CnCTCGACGG CGTCACGCCG CGGGCGCTCG ACAGCCAGTA CTACAGGAAC CTGCTGTACA GGGGCGAGGG GGTGCTGACA  TCCGACGTGG CGCTGCTGAG TCACCCGTTG ACTGCCATGT CGGTGAGGTA CTACAACGAT CACCCGCAGG AGTTCCTCAA CCATTTCTCG TCCAAGATGG ACAAGCTCTA CAATGTGCCC 
CGCCCCGGGT TCGGCGAGAT CCGACGGTTC AGCTGCTTCA GGACCAACAA T 

Retrieve as FASTA  
CDS
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CGGGCGATGC AGCTGATCGA GGACACCCGC ATCACCGTGC ACGCACAGTG CGGGCCCACC GTGTCCTGCG CCGACATCCT GGCCCTCGCC ACCCGCCGCG CCGTCGTCCG CGCAGGCGGC  TGAACCTTCC CCGTCCGCCT CGGCCGCTAT GACAACGTCG CGCCGGCGAC CCACCGCGAC GTCGCCGCCA TCCCGCTGCC GAACACCAGC GACGCCGACA AGCTCCTCGC CGCCTTCGCC  AGCCGGGGCC TCACCGACCT CGTCGCGCTC TCCGGCGCGC ACTCCATCGG CAAGGCACAC TGCCCGTCGT TCCGCGACCG GGCGGCGCTG TACGACGACG ACTTCACCAG GAAGCTCTTC  AGGGACTGCA CTGCAGGAGG GACGCGTACA TGGTGGAGGA CnCTCGACGG CGTCACGCCG CGGGCGCTCG ACAGCCAGTA CTACAGGAAC CTGCTGTACA GGGGCGAGGG GGTGCTGACA  TCCGACGTGG CGCTGCTGAG TCACCCGTTG ACTGCCATGT CGGTGAGGTA CTACAACGAT CACCCGCAGG AGTTCCTCAA CCATTTCTCG TCCAAGATGG ACAAGCTCTA CAATGTGCCC 
CGCCCCGGGT TCGGCGAGAT CCGACGGTTC AGCTGCTTCA GGACCAACAA T 

Retrieve as FASTA